CSPI03G29740 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G29740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPollen-specific arabinogalacta protein BAN102
LocationChr3 : 27285326 .. 27285508 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCACCGCCGTCGTAGCTGCAGATGAGGCCTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCTGGCATTGGTGTCCCGGCAATTGGGTCTCTCGTCGGCGCTTCCTTGCTCTCCTTCGCCGCTTACTACTTGTAA
Homology
[Close]
BLAST of CSPI03G29740 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-13
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A   +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. TrEMBL
Match: A0A0A0L9U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-20
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]
BLAST of CSPI03G29740 vs. TrEMBL
Match: A0A087GYR2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G222900 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-11
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A + +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASVALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. TrEMBL
Match: A0A0D3CUE4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+A +EA APAPGP+S A + +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. TrEMBL
Match: A0A078I6S4_BRANA (BnaA04g02260D protein OS=Brassica napus GN=BnaCnng14120D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+A +EA APAPGP+S A + +PA+GSLVGASL+S  +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYM 60

[Close]
BLAST of CSPI03G29740 vs. TrEMBL
Match: A0A078JAR3_BRANA (BnaCnng40600D protein OS=Brassica napus GN=BnaCnng40600D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+A +EA APAPGP+S A +  PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVAFPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-14
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A   +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-13
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPS-SGAGIGVPAIGSLVGASLLSFAAYY 60
          MEMKKIAC V+FAAA++TAV+AA E  APAPGP+ SGA + VPA+GSLVGASL+S  AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

[Close]
BLAST of CSPI03G29740 vs. NCBI nr
Match: gi|700203465|gb|KGN58598.1| (hypothetical protein Csa_3G697910 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-20
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]
BLAST of CSPI03G29740 vs. NCBI nr
Match: gi|674242249|gb|KFK35014.1| (hypothetical protein AALP_AA5G222900 [Arabis alpina])

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-11
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A + +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASVALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. NCBI nr
Match: gi|923737603|ref|XP_013670224.1| (PREDICTED: arabinogalactan peptide 23-like [Brassica napus])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+A +EA APAPGP+S A +  PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVAFPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of CSPI03G29740 vs. NCBI nr
Match: gi|685296339|ref|XP_009139022.1| (PREDICTED: arabinogalactan peptide 23 [Brassica rapa])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+A +EA APAPGP+S A + +PA+GSLVGASL+S  +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYM 60

[Close]
BLAST of CSPI03G29740 vs. NCBI nr
Match: gi|15230372|ref|NP_191328.1| (arabinogalactan protein 23 [Arabidopsis thaliana])

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-11
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60
          MEMKKIAC VLFAAA++TAV+AA+E  APAPGP+S A   +PA+GSLVGASL+S  +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

The following BLAST results are available for this feature:
BLAST of CSPI03G29740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP23_ARATH3.0e-1370.00Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2[more]
BLAST of CSPI03G29740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9U8_CUCSA2.3e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1[more]
A0A087GYR2_ARAAL1.1e-1170.00Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G222900 PE=4 SV=1[more]
A0A0D3CUE4_BRAOL1.5e-1170.00Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078I6S4_BRANA2.5e-1168.33BnaA04g02260D protein OS=Brassica napus GN=BnaCnng14120D PE=4 SV=1[more]
A0A078JAR3_BRANA2.5e-1170.00BnaCnng40600D protein OS=Brassica napus GN=BnaCnng40600D PE=4 SV=1[more]
BLAST of CSPI03G29740 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57690.11.7e-1470.00 arabinogalactan protein 23[more]
AT2G41905.17.0e-1372.13 BEST Arabidopsis thaliana protein match is: arabinogalactan protein ... [more]
BLAST of CSPI03G29740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203465|gb|KGN58598.1|3.3e-20100.00hypothetical protein Csa_3G697910 [Cucumis sativus][more]
gi|674242249|gb|KFK35014.1|1.6e-1170.00hypothetical protein AALP_AA5G222900 [Arabis alpina][more]
gi|923737603|ref|XP_013670224.1|3.6e-1170.00PREDICTED: arabinogalactan peptide 23-like [Brassica napus][more]
gi|685296339|ref|XP_009139022.1|3.6e-1168.33PREDICTED: arabinogalactan peptide 23 [Brassica rapa][more]
gi|15230372|ref|NP_191328.1|4.7e-1170.00arabinogalactan protein 23 [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G29740.1CSPI03G29740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672FAMILY NOT NAMEDcoord: 1..60
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G29740CsaV3_3G032220Cucumber (Chinese Long) v3cpicucB144
CSPI03G29740Carg07320Silver-seed gourdcarcpiB0797
CSPI03G29740Carg11226Silver-seed gourdcarcpiB0850
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G29740Wax gourdcpiwgoB221
CSPI03G29740Wax gourdcpiwgoB353
CSPI03G29740Wild cucumber (PI 183967)cpicpiB142
CSPI03G29740Cucumber (Gy14) v1cgycpiB306
CSPI03G29740Cucurbita maxima (Rimu)cmacpiB243
CSPI03G29740Cucurbita maxima (Rimu)cmacpiB365
CSPI03G29740Cucurbita maxima (Rimu)cmacpiB456
CSPI03G29740Cucurbita maxima (Rimu)cmacpiB904
CSPI03G29740Cucurbita moschata (Rifu)cmocpiB231
CSPI03G29740Cucurbita moschata (Rifu)cmocpiB356
CSPI03G29740Cucurbita moschata (Rifu)cmocpiB444
CSPI03G29740Cucurbita moschata (Rifu)cmocpiB884
CSPI03G29740Cucumber (Chinese Long) v2cpicuB120
CSPI03G29740Cucumber (Chinese Long) v2cpicuB164
CSPI03G29740Melon (DHL92) v3.5.1cpimeB181
CSPI03G29740Melon (DHL92) v3.5.1cpimeB199
CSPI03G29740Watermelon (Charleston Gray)cpiwcgB183
CSPI03G29740Watermelon (Charleston Gray)cpiwcgB188
CSPI03G29740Watermelon (Charleston Gray)cpiwcgB191
CSPI03G29740Watermelon (97103) v1cpiwmB188
CSPI03G29740Watermelon (97103) v1cpiwmB192
CSPI03G29740Watermelon (97103) v1cpiwmB194
CSPI03G29740Cucurbita pepo (Zucchini)cpecpiB138
CSPI03G29740Cucurbita pepo (Zucchini)cpecpiB313
CSPI03G29740Cucurbita pepo (Zucchini)cpecpiB546
CSPI03G29740Cucurbita pepo (Zucchini)cpecpiB601
CSPI03G29740Bottle gourd (USVL1VR-Ls)cpilsiB171
CSPI03G29740Bottle gourd (USVL1VR-Ls)cpilsiB181
CSPI03G29740Melon (DHL92) v3.6.1cpimedB174
CSPI03G29740Melon (DHL92) v3.6.1cpimedB193
CSPI03G29740Cucumber (Gy14) v2cgybcpiB110
CSPI03G29740Cucumber (Gy14) v2cgybcpiB313
CSPI03G29740Silver-seed gourdcarcpiB0390
CSPI03G29740Silver-seed gourdcarcpiB0488
CSPI03G29740Cucumber (Chinese Long) v3cpicucB191
CSPI03G29740Watermelon (97103) v2cpiwmbB185
CSPI03G29740Watermelon (97103) v2cpiwmbB265
CSPI03G29740Watermelon (97103) v2cpiwmbB268