Bhi11G001187 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001187
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	arabinogalactan protein 23
Location	chr11 : 40792883 .. 40793718 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGAAATGAATAATTTCGAAAAAGGAAAATAAGAAAGAAAACGAAAAACGGTTTTGAGAGAAAGGATCAAATTCAAACAAAATTCCCAAAAAAAAAGCCCTAATTTCCCAACCACGAATCGCCCTCTTCGATTTCCCTCCAAATCAGGAACTCTCTTCTAAATATAGCTCTGCAACTTCCTCATCAAATTACCTTCCACCGAAGATCGCTCCAGTTTTCACCTATAAATCAAGTGCATTCCATCTCATTTTCCTCAGGCAGCAATTTCCAAATCGAAGGCGTTTTTCGGCGATCCTTCTTGTTCGATTCATCTCACCGAATAAAACACCACACAAATCCAAAAAAAAAAACTGAAAATCGCAATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCTGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCATTGGTCTCCCGGCAATTGGCTCTGTCATCGGGGCTTCATTGCTCTCCGTCGCCGCTTACTACTTGCAATAGTGGGATTGATGAAGGAGAGGAAAAGGAATGAAGGGAGATAATACGAGGGATTGGTTAATGTGCTGCCGTCGATATTTATATATTGGACAGAATTTTCTGTGCGCTTAATTGTCAGATTTATTATTTTATATATTTTGTTTTAAATTTGGGAAAATTTGATGATTAGTCAATAATACTTCTTTTTAATTAACATTTTTATTTTCATAATCAGCTAAATTACTTCCCAGAGGAATCAATTACCATCTCGAATCTCACTCTTGCAATCTTTAAAAAAAATTAATTAGAAA

mRNA sequence

TAGGAAATGAATAATTTCGAAAAAGGAAAATAAGAAAGAAAACGAAAAACGGTTTTGAGAGAAAGGATCAAATTCAAACAAAATTCCCAAAAAAAAAGCCCTAATTTCCCAACCACGAATCGCCCTCTTCGATTTCCCTCCAAATCAGGAACTCTCTTCTAAATATAGCTCTGCAACTTCCTCATCAAATTACCTTCCACCGAAGATCGCTCCAGTTTTCACCTATAAATCAAGTGCATTCCATCTCATTTTCCTCAGGCAGCAATTTCCAAATCGAAGGCGTTTTTCGGCGATCCTTCTTGTTCGATTCATCTCACCGAATAAAACACCACACAAATCCAAAAAAAAAAACTGAAAATCGCAATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCTGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCATTGGTCTCCCGGCAATTGGCTCTGTCATCGGGGCTTCATTGCTCTCCGTCGCCGCTTACTACTTGCAATAGTGGGATTGATGAAGGAGAGGAAAAGGAATGAAGGGAGATAATACGAGGGATTGGTTAATGTGCTGCCGTCGATATTTATATATTGGACAGAATTTTCTGTGCGCTTAATTGTCAGATTTATTATTTTATATATTTTGTTTTAAATTTGGGAAAATTTGATGATTAGTCAATAATACTTCTTTTTAATTAACATTTTTATTTTCATAATCAGCTAAATTACTTCCCAGAGGAATCAATTACCATCTCGAATCTCACTCTTGCAATCTTTAAAAAAAATTAATTAGAAA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCTGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCATTGGTCTCCCGGCAATTGGCTCTGTCATCGGGGCTTCATTGCTCTCCGTCGCCGCTTACTACTTGCAATAG

Protein sequence

MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYLQ

Homology

[Close]

BLAST of Bhi11G001187 vs. TAIR10
Match: AT3G57690.1 (arabinogalactan protein 23)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-13
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Bhi11G001187 vs. TAIR10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-07
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPG-PSSGAAIGLPAIGSVIGASLLSVAAYY 60
          MEMKKIAC V+FAAA+++A +A  E  APAPG      ++ +PA+GS++GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMA-AEVGAPAPGXXXXXXSVAVPALGSLVGASLVSLFAYY 60

[Close]

BLAST of Bhi11G001187 vs. Swiss-Prot
Match: sp|Q8S2W4|AGP23_ARATH (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Bhi11G001187 vs. TrEMBL
Match: tr|W9SPR6|W9SPR6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000818 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSA +A+D   APAP P+ G +  LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

[Close]

BLAST of Bhi11G001187 vs. TrEMBL
Match: tr|A0A0D3CUE4|A0A0D3CUE4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 39/60 (65.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++A +A +EA APAPGP+S A++ LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Bhi11G001187 vs. TrEMBL
Match: tr|A0A2K2C4B1|A0A2K2C4B1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268800v3 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-10
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACA+LFAAA+VSA +A DE  APAP P+SGA++ LP +GS++GASL S+ A YL
Sbjct: 1  MEMKKIACAILFAAASVSAVMA-DEVAAPAPSPTSGASVSLPVVGSLVGASLASLIALYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 60

[Close]

BLAST of Bhi11G001187 vs. TrEMBL
Match: tr|M4DDP3|M4DDP3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 38/60 (63.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++A +A +EA APAPGP+S A++ LPA+GS++GASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYM 60

[Close]

BLAST of Bhi11G001187 vs. TrEMBL
Match: tr|A0A0D3BX83|A0A0D3BX83_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106341113 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 38/60 (63.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++A +A +EA APAPGP+S A++ LPA+GS++GASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYYM 60

[Close]

BLAST of Bhi11G001187 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEM KI CA+LFAAATVSA VAHDEA APAPGP+SGA +GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Bhi11G001187 vs. NCBI nr
Match: XP_022932375.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKI CAVLFAAATV+AAVA +EA APAPGP+S A +GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Bhi11G001187 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAP--APGPSSGAAIGLPAIGSVIGASLLSVAAY 60
          MEMKKIACA LFAAATV+A VA DE+L+P  APGPSS A+  LPA+GS++GASL+S+ AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

[Close]

BLAST of Bhi11G001187 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAP--APGPSSGAAIGLPAIGSVIGASLLSVAAY 60
          MEMKKIACA LFAAATV+A VA DE+L+P  APGPSS A+  LPA+GS++GASL+S  AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

[Close]

BLAST of Bhi11G001187 vs. NCBI nr
Match: XP_010104709.1 (arabinogalactan peptide 23 [Morus notabilis] >EXC48805.1 hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSA +A+D   APAP P+ G +  LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

The following BLAST results are available for this feature:

BLAST of Bhi11G001187 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	7.0e-13	63.33	arabinogalactan protein 23	[more]
AT2G41905.1	2.0e-07	55.74	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

BLAST of Bhi11G001187 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S2W4\|AGP23_ARATH	1.3e-11	63.33	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Bhi11G001187 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9SPR6\|W9SPR6_9ROSA	4.0e-10	65.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000818 PE=4 SV=1	[more]
tr\|A0A0D3CUE4\|A0A0D3CUE4_BRAOL	4.0e-10	65.00	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
tr\|A0A2K2C4B1\|A0A2K2C4B1_POPTR	5.2e-10	67.21	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268800v3 PE=...	[more]
tr\|M4DDP3\|M4DDP3_BRARP	6.7e-10	63.33	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A0D3BX83\|A0A0D3BX83_BRAOL	6.7e-10	63.33	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10634111...	[more]

BLAST of Bhi11G001187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998512.1	6.6e-17	85.25	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_022932375.1	2.1e-15	83.61	arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogala...	[more]
XP_022933008.1	2.1e-10	70.49	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]
XP_023004714.1	2.1e-10	70.49	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_010104709.1	6.0e-10	65.00	arabinogalactan peptide 23 [Morus notabilis] >EXC48805.1 hypothetical protein L4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001187	Bhi11M001187	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G001187	ClCG10G012450	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G001187	CmoCh14G010270	Cucurbita moschata (Rifu)	cmowgoB0279
Bhi11G001187	Cp4.1LG03g04480	Cucurbita pepo (Zucchini)	cpewgoB0742
Bhi11G001187	Carg11226	Silver-seed gourd	carwgoB0951
Bhi11G001187	Cla017262	Watermelon (97103) v1	wgowmB007
Bhi11G001187	Cla97C10G195240	Watermelon (97103) v2	wgowmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001187	Wax gourd	wgowgoB020
Bhi11G001187	Cucumber (Gy14) v1	cgywgoB401
Bhi11G001187	Cucumber (Gy14) v2	cgybwgoB212
Bhi11G001187	Cucumber (Gy14) v2	cgybwgoB618
Bhi11G001187	Cucurbita maxima (Rimu)	cmawgoB0289
Bhi11G001187	Cucurbita maxima (Rimu)	cmawgoB0454
Bhi11G001187	Cucurbita maxima (Rimu)	cmawgoB0553
Bhi11G001187	Cucurbita maxima (Rimu)	cmawgoB1088
Bhi11G001187	Cucurbita moschata (Rifu)	cmowgoB0452
Bhi11G001187	Cucurbita moschata (Rifu)	cmowgoB0551
Bhi11G001187	Cucurbita moschata (Rifu)	cmowgoB1082
Bhi11G001187	Cucurbita pepo (Zucchini)	cpewgoB0171
Bhi11G001187	Cucurbita pepo (Zucchini)	cpewgoB0377
Bhi11G001187	Cucurbita pepo (Zucchini)	cpewgoB0668
Bhi11G001187	Wild cucumber (PI 183967)	cpiwgoB221
Bhi11G001187	Wild cucumber (PI 183967)	cpiwgoB658
Bhi11G001187	Cucumber (Chinese Long) v3	cucwgoB226
Bhi11G001187	Cucumber (Chinese Long) v3	cucwgoB672
Bhi11G001187	Cucumber (Chinese Long) v2	cuwgoB221
Bhi11G001187	Cucumber (Chinese Long) v2	cuwgoB650
Bhi11G001187	Bottle gourd (USVL1VR-Ls)	lsiwgoB202
Bhi11G001187	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G001187	Melon (DHL92) v3.6.1	medwgoB198
Bhi11G001187	Melon (DHL92) v3.6.1	medwgoB375
Bhi11G001187	Melon (DHL92) v3.5.1	mewgoB196
Bhi11G001187	Melon (DHL92) v3.5.1	mewgoB374
Bhi11G001187	Watermelon (Charleston Gray)	wcgwgoB009
Bhi11G001187	Watermelon (97103) v2	wgowmbB047
Bhi11G001187	Watermelon (97103) v1	wgowmB001
Bhi11G001187	Silver-seed gourd	carwgoB0437
Bhi11G001187	Silver-seed gourd	carwgoB0542
Bhi11G001187	Silver-seed gourd	carwgoB0894