Cp4.1LG03g02550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g02550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionFar-red elongated hypocotyl 1, putative isoform 1
LocationCp4.1LG03 : 554723 .. 556863 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGATATCAATCGAGCTACAGTTCATACAATCTTATATAAATATATTTTGCTTTAAATTTCTCACATTTTAATTGAGATTATACCCAATAGTGTTTTAGATAGTTTAGGGTATTTTAAAAAGTGGAATTAGATTATAAATATGAATATCCTTACGTTATCCACAATCTTAGATTCTAGAAAAGGCAGGAAGAAATAAAATATGGTTTCTCACAGTAGTTATCCTTTTAAAATACTTGGAATAAAGAGAAAGAAACAGTACAAGGCGCAGTGATGAGAGTGATGGGATTGGGGGGAACGAACGAAGCAACTTTCTCGTGCCACCCACGTGAACTCCAAATGGACGTGTCTAATTCTGACTCGATGGCGCGCACCAGTAAGACCCAATTCCCCCAATTCTCTTACCCATTTTTTTTCCCTTTTTCTGGGAATCGTTTGATGAAAAGATAGCAACAATAACTATCCTGCGCGAGCTGCTCAGGCTTCTGTGACTCCAATTTCTTAGCGTCTTTTTCCTCTTCTTTTTCCAGTGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGGTTTATCATCTGGGTTTTTAAGATTCACCACTTTTATCAGTTTTGGATTATGTTTCTTATACTGTTCATCGAGTGTTTACTTTCACTTTCCTCTCTTCTTTTTTCCCTTTTCGTTTGATTTACTGAAGATTTCAAGTAGGTCTGTTCTTTTGTTTGTCTAATTACTGAAATGGTGGATGGGGATCAAGATGGGGTTTAGGTTCTTTCCCATTTCTTAGTGTTTCGAGTATCGTTATTGTTGCTATTATTTACTCGGGAGATGAAGAACAATCTTGATCCGCGCTATACTAATTTAGGGAAGTCTGATTTCTTTTCCTTTTTTGAAGTTTCAATCGATTGATGGGGTCTGCGATTTTGCCTTACTGGTACAGATCGACTTATTACCGATTTTAATTACCTAGAATACACTTTGAGAAATTAGACGACTGAAAACGAAATCCTACCAATTCTATGCGTTACCAGCTCATTTTGGAAAGAGATCGTATCCAGTCAAAATGTTCTAAGACATTGTTTTCATGTTTTGGTTGCTGGAACTCTTATTTTAATCCAGCTCTGTTGTTGGTATATTTTCACTGGGAGTTTGAAGCATTATCTCTTGTAGTTCCTGTCTTGCATCCAAATTAATGGAGGATTGCAGCCTTTTCCCTGTCTCTTACCTGAAGAATTATGTCGTTTTCTAATGTTTTTTTTTTTTGCAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAACATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATAATGGCTTACCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAACACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGGTAGTAAACGCATCTTCCATAAGAATCTTTATCAGTTGAAGTTCATTGTTTGCCATTTACTAAATCACATTTATTCTCTTAATGCAGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAA

mRNA sequence

AAGATATCAATCGAGCTACAGTTCATACAATCTTATATAAATATATTTTGCTTTAAATTTCTCACATTTTAATTGAGATTATACCCAATAGTGTTTTAGATAGTTTAGGGTATTTTAAAAAGTGGAATTAGATTATAAATATGAATATCCTTACGTTATCCACAATCTTAGATTCTAGAAAAGGCAGGAAGAAATAAAATATGGTTTCTCACAGTAGTTATCCTTTTAAAATACTTGGAATAAAGAGAAAGAAACAGTACAAGGCGCAGTGATGAGAGTGATGGGATTGGGGGGAACGAACGAAGCAACTTTCTCGTGCCACCCACGTGAACTCCAAATGGACGTGTCTAATTCTGACTCGATGGCGCGCACCATGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAACATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATAATGGCTTACCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAACACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGGTAGTAAACGCATCTTCCATAAGAATCTTTATCAGTTGAAGTTCATTGTTTGCCATTTACTAAATCACATTTATTCTCTTAATGCAGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAA

Coding sequence (CDS)

ATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAACATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATAATGGCTTACCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAACACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGGTAGTAAACGCATCTTCCATAAGAATCTTTATCAGTTGAAGTTCATTGTTTGCCATTTACTAAATCACATTTATTCTCTTAATGCAGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAA

Protein sequence

MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYNGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHKNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML
Homology
[Close]
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match: A0A0A0LFJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G734140 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.7e-107
Identity = 210/285 (73.68%), Postives = 231/285 (81.05%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNPAEINSFYVISKL++NPFDLNKKRKLPAEHLGLPSPKHKHC+E F SK AFLY
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            GLPETEHMNVQFIK +ANVL FD+ S PES KDSNS  EESDSATSVFHGAKFELNQA 
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 -CTYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CT+D+S+T+ MSFGGASSE+ HFSVESSTAMESSSTEQE AF SGENR+ET+ K+QE L
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHK 240
           LELDS EDY+ AEY +D+T+QCTDQELE+LFYSNGL+PN YILSSGRW +NH        
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINH-------- 331

Query: 241 NLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                EAQS ARAPTIDQEFEQYFSMLML
Sbjct: 332 ---------------------EAQSRARAPTIDQEFEQYFSMLML 347

[Close]
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match: D7THL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00610 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.8e-43
Identity = 115/285 (40.35%), Postives = 158/285 (55.44%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M+E  +NP+E++S +V  +L TN  DL KKRKL AE L LP PKHK C   F S++ +  
Sbjct: 1   MDETNKNPSELHSSHVCKELNTNIMDLKKKRKLQAELLDLPLPKHKCCGRSFSSQIVYPL 60

Query: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKF--ELNQ 120
           +   E E ++ Q +K   N    DDGS P+SAKDSNS    SDS  SV+  AKF  E  +
Sbjct: 61  DEDTEIEDLHAQIVKEETNGETIDDGSEPDSAKDSNSLAGYSDSVISVYGEAKFEPECEK 120

Query: 121 ACTYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            C Y+   +  +++GG SS +  +S++ ST M    ++ ++ F SGE+       ++E L
Sbjct: 121 TCPYNYPYSSSVNWGGNSSRDDLYSLK-STRMTPDVSKDKMTFFSGEHNPLVSQNLEEQL 180

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHK 240
           LE  +  D+  +EY     E  TD+EL D+ YS+G+ PN Y+LSSGRW+VN         
Sbjct: 181 LEFGNDIDFMCSEYRDGMAEHSTDKELADMPYSSGMKPNNYVLSSGRWSVNQ-------- 240

Query: 241 NLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                +AQ   R PTIDQEFEQYFSMLML
Sbjct: 241 ---------------------DAQIGTRKPTIDQEFEQYFSMLML 255

[Close]
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match: B9HBT1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08760g PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.9e-35
Identity = 106/291 (36.43%), Postives = 152/291 (52.23%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M+E   +P+EINSF       +  F LNKKRKL  E +GLP  KHK  +   P + + +Y
Sbjct: 1   MDEDSGDPSEINSFQFKEAPNSKLFCLNKKRKLQDEQVGLPISKHKCWDHRLPLETSTIY 60

Query: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
               E + +    IK +A     D+GS PESAKDSNSF  +SDSA SV   AK E+  + 
Sbjct: 61  EENQEEKDLITHIIKENAERRAIDEGSDPESAKDSNSFVGDSDSAMSVSGEAKLEMEVSK 120

Query: 121 TYDSSSTQCMSFG-GASSENTHFSVESSTAMESSSTEQEVAFASGE-------NRIETVH 180
            +        S+  G S ++T +S +++ A   +  E E+ F  G+       + ++   
Sbjct: 121 IWSPDRPSTSSYNWGNSLKDTQYSPDNAAAPRHAGKE-ELVFVEGKDDHCCHYDGLQVYQ 180

Query: 181 KVQEHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGS 240
            ++E +LE++S  +Y  +E+G D  E CTD+E++D+ YSN L+ N Y+ SS  W VN   
Sbjct: 181 NLEEPILEIESPLNYSCSEFGTDNIEPCTDKEVDDILYSNELNLNGYVHSSEGWAVNQ-- 240

Query: 241 KRIFHKNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                      +AQSS R PTIDQEFEQYFSMLM+
Sbjct: 241 ---------------------------DAQSSPRKPTIDQEFEQYFSMLMM 261

[Close]
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match: A0A067KKY2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09091 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.6e-30
Identity = 103/287 (35.89%), Postives = 148/287 (51.57%), Query Frame = 1 

Query: 6   QNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYNGLPE 65
           +N +EINSF++   L  N F+L+KKRKL AE  GLP PK K  +     K       + E
Sbjct: 7   ENLSEINSFHITKALNANMFNLSKKRKLQAEQFGLPMPKLKCWDHRLSPK------SIDE 66

Query: 66  TEHMN--VQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFE--LNQACT 125
            + +    Q I+ +A     DDGS PESAKDSNSF  +SDSATS+++ +K E  +++   
Sbjct: 67  NQEVEDFTQKIQENAERHEIDDGSDPESAKDSNSFIGDSDSATSLYYDSKLETEISKEWP 126

Query: 126 YDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGEN----RIETVHK-VQE 185
            +  S+    +G  + E+    +  STA    + + E  F + E+    +   +H+   +
Sbjct: 127 CNGPSSSSFKWGCHNLEDPQCPLYDSTA-PGGTGKGEPTFVAEEHYPLHKCNGLHQNFDD 186

Query: 186 HLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIF 245
            + E +S  DY  +E+G D  E    +EL+D+ Y  G+D N Y+LSSGRW VN       
Sbjct: 187 AIGEFESHSDYTCSEHGTDSIEPFIRKELDDILYPKGVDSNVYVLSSGRWNVNQ------ 246

Query: 246 HKNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                  +AQ  A+ PTIDQEFEQYFSMLML
Sbjct: 247 -----------------------DAQPVAKKPTIDQEFEQYFSMLML 257

[Close]
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match: A0A061EYY4_THECC (Far-red elongated hypocotyl 1, putative isoform 2 OS=Theobroma cacao GN=TCM_021907 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 105/287 (36.59%), Postives = 142/287 (49.48%), Query Frame = 1 

Query: 3   EKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYNG 62
           + + NP+++ S    S    N  D NKKRKL AE LGLP  KH+  N   PSK    ++ 
Sbjct: 4   DNQTNPSQVKSLLNGS---VNIVDFNKKRKLEAEQLGLPISKHQCWNRSLPSKPP-TFSS 63

Query: 63  LPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKF--ELNQAC 122
           + E E  +    KG        D S   SAKDSNSF E+SD A SV   AKF  E  +  
Sbjct: 64  IQEVEGFSPCTFKGKGGAAY--DVSETGSAKDSNSFAEDSDCAMSVHDEAKFGTEDTKYL 123

Query: 123 TYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENR----IETVHKVQE 182
            Y  +S+    +G  S  + + S   ST + S S ++EV  + G       +E    ++E
Sbjct: 124 LYGRASSSSSDWGSNSQGSLYSS--DSTTVASRSVDKEVLSSPGGQPEPADVELADNLEE 183

Query: 183 HLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIF 242
            L+E  S  DY ++ YG+   E+  D+E+E++  +NG +PN Y+LSSGRW          
Sbjct: 184 SLVEYGSHIDYIYSGYGNYPIEEYQDKEIEEILNTNGANPNVYVLSSGRW---------- 243

Query: 243 HKNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                              S N EA  +AR PTIDQEFEQYFS LML
Sbjct: 244 -------------------SANQEAPQTARKPTIDQEFEQYFSTLML 253

[Close]
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match: gi|778683509|ref|XP_004137783.2| (PREDICTED: uncharacterized protein LOC101207650 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 1.3e-106
Identity = 210/285 (73.68%), Postives = 231/285 (81.05%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNPAEINSFYVISKL++NPFDLNKKRKLPAEHLGLPSPKHKHC+E F SK AFLY
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            GLPETEHMNVQFIK +ANVL FD+ S PES KDSNS  EESDSATSVFHGAKFELNQA 
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 -CTYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CT+D+S+T+ MSFGGASSE+ HFSVESSTAMESSSTEQE AF SGENR+ET+ K+QE L
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHK 240
           LELDS EDY+ AEY +D+T+QCTDQELE+LFYSNGL+PN YILSSGRW +NH        
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINH-------- 331

Query: 241 NLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                EAQS ARAPTIDQEFEQYFSMLML
Sbjct: 332 ---------------------EAQSRARAPTIDQEFEQYFSMLML 347

[Close]
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match: gi|659083774|ref|XP_008442533.1| (PREDICTED: uncharacterized protein LOC103486380 [Cucumis melo])

HSP 1 Score: 385.6 bits (989), Expect = 7.6e-104
Identity = 205/281 (72.95%), Postives = 224/281 (79.72%), Query Frame = 1 

Query: 5   KQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYNGLP 64
           ++NP EINSFY+ISKL  NP+DLNKKRKLPAEHLGLPSPKHKHC+EGF SK AFLY GLP
Sbjct: 2   EENPTEINSFYIISKL--NPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLP 61

Query: 65  ETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA--CTY 124
           ET HMNVQFIK +ANVL FD+GS PES KDSNS  EESDSATSVFHGAKFELNQA  CT+
Sbjct: 62  ETGHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTH 121

Query: 125 DSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 184
           D+S+TQ MSFGGASSE+THFSVESSTAME  STEQE AF SGENRIET+HK+QEHLLELD
Sbjct: 122 DTSTTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELD 181

Query: 185 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHKNLYQ 244
             EDYD AEY + +T+QCTDQELE+LFYSNGL+PN YILSSGRW +NH            
Sbjct: 182 GHEDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINH------------ 241

Query: 245 LKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                            EAQS ARAPTIDQEFEQYFSMLML
Sbjct: 242 -----------------EAQSRARAPTIDQEFEQYFSMLML 251

[Close]
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match: gi|225440398|ref|XP_002268453.1| (PREDICTED: uncharacterized protein LOC100264843 [Vitis vinifera])

HSP 1 Score: 182.6 bits (462), Expect = 9.8e-43
Identity = 115/285 (40.35%), Postives = 158/285 (55.44%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M+E  +NP+E++S +V  +L TN  DL KKRKL AE L LP PKHK C   F S++ +  
Sbjct: 1   MDETNKNPSELHSSHVCKELNTNIMDLKKKRKLQAELLDLPLPKHKCCGRSFSSQIVYPL 60

Query: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKF--ELNQ 120
           +   E E ++ Q +K   N    DDGS P+SAKDSNS    SDS  SV+  AKF  E  +
Sbjct: 61  DEDTEIEDLHAQIVKEETNGETIDDGSEPDSAKDSNSLAGYSDSVISVYGEAKFEPECEK 120

Query: 121 ACTYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            C Y+   +  +++GG SS +  +S++ ST M    ++ ++ F SGE+       ++E L
Sbjct: 121 TCPYNYPYSSSVNWGGNSSRDDLYSLK-STRMTPDVSKDKMTFFSGEHNPLVSQNLEEQL 180

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFHK 240
           LE  +  D+  +EY     E  TD+EL D+ YS+G+ PN Y+LSSGRW+VN         
Sbjct: 181 LEFGNDIDFMCSEYRDGMAEHSTDKELADMPYSSGMKPNNYVLSSGRWSVNQ-------- 240

Query: 241 NLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                +AQ   R PTIDQEFEQYFSMLML
Sbjct: 241 ---------------------DAQIGTRKPTIDQEFEQYFSMLML 255

[Close]
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match: gi|1009157679|ref|XP_015896885.1| (PREDICTED: uncharacterized protein LOC107430554 [Ziziphus jujuba])

HSP 1 Score: 163.7 bits (413), Expect = 4.7e-37
Identity = 114/286 (39.86%), Postives = 159/286 (55.59%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M++  ++P+EINSF V+  ++T      KKRKL AE L LP  KHK C +  PS  +   
Sbjct: 1   MDDDNKSPSEINSFRVVDVIRTI-----KKRKLQAEQLELPMAKHK-CWQSSPSNESVSM 60

Query: 61  N-GLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA 120
           +   P+ + ++   I G       +D S  +S KDSNSF  +SDS TS++  AK E    
Sbjct: 61  SIENPDVQSLHSSIIGGKTEEHVLEDRSEHDSGKDSNSFFGDSDSPTSIYVEAKVEPEYV 120

Query: 121 CTY--DSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEH 180
            TY  D  ST   S G  S ++ ++ ++S T +++SS ++E+AF+  ++ I      +EH
Sbjct: 121 KTYLYDMPST---SSGTESCKDANYPLDSLTVVKASSGKEELAFSQHDDGIHLFQNHEEH 180

Query: 181 LLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFH 240
           L+E  +  DY   EY  ++ EQCTD+ELEDL YSN L+PN Y+LSSGRW           
Sbjct: 181 LIEFSNHVDYINCEY--EDIEQCTDKELEDLLYSNRLNPNTYVLSSGRW----------- 240

Query: 241 KNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                             S+N + QS AR PTIDQEFEQYFSMLML
Sbjct: 241 ------------------SINQDTQSGARKPTIDQEFEQYFSMLML 246

[Close]
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match: gi|1009157861|ref|XP_015896979.1| (PREDICTED: uncharacterized protein LOC107430630 [Ziziphus jujuba])

HSP 1 Score: 163.7 bits (413), Expect = 4.7e-37
Identity = 114/286 (39.86%), Postives = 159/286 (55.59%), Query Frame = 1 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M++  ++P+EINSF V+  ++T      KKRKL AE L LP  KHK C +  PS  +   
Sbjct: 1   MDDDNKSPSEINSFRVVDVIRTI-----KKRKLQAEQLELPMAKHK-CWQSSPSNESVSM 60

Query: 61  N-GLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA 120
           +   P+ + ++   I G       +D S  +S KDSNSF  +SDS TS++  AK E    
Sbjct: 61  SIENPDVQSLHSSIIGGKTEEHVLEDRSEHDSGKDSNSFFGDSDSPTSIYVEAKVEPEYV 120

Query: 121 CTY--DSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEH 180
            TY  D  ST   S G  S ++ ++ ++S T +++SS ++E+AF+  ++ I      +EH
Sbjct: 121 KTYLYDMPST---SSGTESCKDANYPLDSLTVVKASSGKEELAFSQHDDGIHLFQNHEEH 180

Query: 181 LLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHGSKRIFH 240
           L+E  +  DY   EY  ++ EQCTD+ELEDL YSN L+PN Y+LSSGRW+VN        
Sbjct: 181 LIEFSNHVDYINCEY--EDIEQCTDKELEDLLYSNRLNPNTYVLSSGRWSVNQ------- 240

Query: 241 KNLYQLKFIVCHLLNHIYSLNAEAQSSARAPTIDQEFEQYFSMLML 284
                                 + QS AR PTIDQEFEQYFSMLML
Sbjct: 241 ----------------------DTQSGARKPTIDQEFEQYFSMLML 246

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g02550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g02550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFJ8_CUCSA8.7e-10773.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G734140 PE=4 SV=1[more]
D7THL8_VITVI6.8e-4340.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00610 PE=4 SV=... [more]
B9HBT1_POPTR8.9e-3536.43Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08760g PE=4 SV=1[more]
A0A067KKY2_JATCU8.6e-3035.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09091 PE=4 SV=1[more]
A0A061EYY4_THECC1.2e-2836.59Far-red elongated hypocotyl 1, putative isoform 2 OS=Theobroma cacao GN=TCM_0219... [more]
BLAST of Cp4.1LG03g02550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g02550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778683509|ref|XP_004137783.2|1.3e-10673.68PREDICTED: uncharacterized protein LOC101207650 [Cucumis sativus][more]
gi|659083774|ref|XP_008442533.1|7.6e-10472.95PREDICTED: uncharacterized protein LOC103486380 [Cucumis melo][more]
gi|225440398|ref|XP_002268453.1|9.8e-4340.35PREDICTED: uncharacterized protein LOC100264843 [Vitis vinifera][more]
gi|1009157679|ref|XP_015896885.1|4.7e-3739.86PREDICTED: uncharacterized protein LOC107430554 [Ziziphus jujuba][more]
gi|1009157861|ref|XP_015896979.1|4.7e-3739.86PREDICTED: uncharacterized protein LOC107430630 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009639 response to red or far red light
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g02550.1Cp4.1LG03g02550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37723FAMILY NOT NAMEDcoord: 260..283
score: 9.9E-73coord: 1..230
score: 9.9
NoneNo IPR availablePANTHERPTHR37723:SF1FHL-3coord: 260..283
score: 9.9E-73coord: 1..230
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g02550Cucsa.175540Cucumber (Gy14) v1cgycpeB0488
Cp4.1LG03g02550CmaCh14G001370Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g02550CmaCh06G002880Cucurbita maxima (Rimu)cmacpeB830
Cp4.1LG03g02550CmoCh06G002890Cucurbita moschata (Rifu)cmocpeB783
Cp4.1LG03g02550CmoCh14G001310Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g02550Cla017906Watermelon (97103) v1cpewmB597
Cp4.1LG03g02550Csa3G734140Cucumber (Chinese Long) v2cpecuB598
Cp4.1LG03g02550MELO3C009249Melon (DHL92) v3.5.1cpemeB571
Cp4.1LG03g02550ClCG10G021240Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g02550CSPI03G32220Wild cucumber (PI 183967)cpecpiB600
Cp4.1LG03g02550MELO3C009249.2Melon (DHL92) v3.6.1cpemedB678
Cp4.1LG03g02550CsaV3_3G034800Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g02550Bhi11G001882Wax gourdcpewgoB0750
Cp4.1LG03g02550CsGy3G030050Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g02550Carg12539Silver-seed gourdcarcpeB1391
Cp4.1LG03g02550Carg01057Silver-seed gourdcarcpeB0230
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g02550Cp4.1LG08g11640Cucurbita pepo (Zucchini)cpecpeB487
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g02550Cucurbita maxima (Rimu)cmacpeB571
Cp4.1LG03g02550Cucurbita maxima (Rimu)cmacpeB638
Cp4.1LG03g02550Cucurbita maxima (Rimu)cmacpeB883
Cp4.1LG03g02550Cucurbita moschata (Rifu)cmocpeB522
Cp4.1LG03g02550Cucurbita moschata (Rifu)cmocpeB588
Cp4.1LG03g02550Cucurbita moschata (Rifu)cmocpeB821
Cp4.1LG03g02550Wild cucumber (PI 183967)cpecpiB621
Cp4.1LG03g02550Wild cucumber (PI 183967)cpecpiB630
Cp4.1LG03g02550Cucumber (Chinese Long) v2cpecuB619
Cp4.1LG03g02550Cucumber (Chinese Long) v2cpecuB627
Cp4.1LG03g02550Bottle gourd (USVL1VR-Ls)cpelsiB487
Cp4.1LG03g02550Bottle gourd (USVL1VR-Ls)cpelsiB491
Cp4.1LG03g02550Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g02550Watermelon (Charleston Gray)cpewcgB551
Cp4.1LG03g02550Watermelon (Charleston Gray)cpewcgB553
Cp4.1LG03g02550Watermelon (97103) v1cpewmB618
Cp4.1LG03g02550Watermelon (97103) v1cpewmB620
Cp4.1LG03g02550Melon (DHL92) v3.5.1cpemeB556
Cp4.1LG03g02550Melon (DHL92) v3.5.1cpemeB593
Cp4.1LG03g02550Cucumber (Gy14) v2cgybcpeB107
Cp4.1LG03g02550Cucumber (Gy14) v2cgybcpeB555
Cp4.1LG03g02550Cucumber (Gy14) v2cgybcpeB675
Cp4.1LG03g02550Cucumber (Gy14) v2cgybcpeB830
Cp4.1LG03g02550Melon (DHL92) v3.6.1cpemedB660
Cp4.1LG03g02550Melon (DHL92) v3.6.1cpemedB663
Cp4.1LG03g02550Melon (DHL92) v3.6.1cpemedB703
Cp4.1LG03g02550Silver-seed gourdcarcpeB0831
Cp4.1LG03g02550Cucumber (Chinese Long) v3cpecucB0770
Cp4.1LG03g02550Cucumber (Chinese Long) v3cpecucB0773
Cp4.1LG03g02550Cucumber (Chinese Long) v3cpecucB0781
Cp4.1LG03g02550Wax gourdcpewgoB0807
Cp4.1LG03g02550Wax gourdcpewgoB0812
Cp4.1LG03g02550Cucurbita pepo (Zucchini)cpecpeB093
Cp4.1LG03g02550Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG03g02550Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG03g02550Cucurbita pepo (Zucchini)cpecpeB480
Cp4.1LG03g02550Cucumber (Gy14) v1cgycpeB0100