Carg12539 (gene) Silver-seed gourd

Overview
NameCarg12539
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein far-red elongated hypocotyl 1
LocationCucurbita_argyrosperma_scaffold_056 : 514548 .. 516692 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTTTCCCTTTTTATGGGAATCGTTTGATGAAAAGATGGCAACAATAGGGACTATCCTGCGCGAGCTGCTCAGGCTTCTGTGACTCCAATTTCTCAGCGTTTTTTTCCTCCTCTCTTTCCAGTGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTTTATCGTCTTCGGGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGGTTTATCATCTGGGTTTTTAAGATTCTTGCTTCTAAACCACTTTTATCAGTTTTGGATTATGTTCCTTAAACTGTTCATCGAGTGTTTACTTTCACTTTCCTCTCTTCTTTTTTCCCTTTTCGTTTGATTTAGTGAAGATTTCAAGTAGGTCTGTTCTTTTGTTCGTCTAATTACTGAAATGGTGGATGGGGATCAAGATGGGGTTTAGGTTCTTTTCCATTTCTTAGTGTTTCGAGTATCGTTATTGTTGCTATTATTTACTCGGGAGATGAAGAACAATCTTGATCCGCGCTATACTAATTTAGGGAAGTCTGATTTCTTTTCCTTTTTTGAAGTTTCAATCGATTGATGGGGTCTGCGATTTTGCCTTACTGGTACAGATCAACTTATTACCGATTTTAATTACCTAGAATACACATTGAGAAATTAGACGACTGAAAACGAAATCCTACCAATTCTATGCGTTACCAGCTCCTTTTGGAAACAAATTCATGCTTATAATGTTCTAAGACATTGTTTTCATGTTTTGGTTGCTGGAACTCTTCTGTTAATCCAACTCTGTTGGTATATTTTCACTGAGAGTTTGAAGCATTATCTCTTGTAGTTCCTGTCTTGCATCCAAATTAATGGAGGATTGCAGCATTTTCCCTGTCTCTTATCTGAAGAATTATGTCGTTTTCTAATGTTTTTTTTGCAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGGTAGTAAACACATCTTCCATAAGAATCTTTATCAGTTGAAGTTCATTGTTTGCCATTTACTAAATCACATTCATTCTCTTAATGCAGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAACTCCGATTGCTCGTCCCGAGTACGAGCGCGACCGACATGTAATGTACTAACGCCATCTAAAGTATCGAGTTTTTATGAATAATGTGGATATCAGTTTCATCCTAACGAATTGTACCGAATGAACATTCCGAAAATCGTATTGATAGCAATGGCGTGTTTAACTCTGTAGTAAGTTTCATTCTTTACACTAAACAAATTGTTGCAGTGGCTGAATCAAACTTTACAGAGACAGGAAAATGAAGAATTCAAAGAGATTATTGAACTTTACAGAAACAGATTCACGTAGAAGCAGAATTTGGGCAAAACACGCGAGAAGGGAAAGAAAAGAAGCTGGAAATTATTAATTTATAAAGACCAAAACTTTTGGTAAACGGAATGTCTCAACACTT

mRNA sequence

ATTTTTTTTCCCTTTTTATGGGAATCGTTTGATGAAAAGATGGCAACAATAGGGACTATCCTGCGCGAGCTGCTCAGGCTTCTGTGACTCCAATTTCTCAGCGTTTTTTTCCTCCTCTCTTTCCAGTGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTTTATCGTCTTCGGGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAACTCCGATTGCTCGTCCCGAGTACGAGCGCGACCGACATGTAATGTACTAACGCCATCTAAAGTATCGAGTTTTTATGAATAATGTGGATATCAGTTTCATCCTAACGAATTGTACCGAATGAACATTCCGAAAATCGTATTGATAGCAATGGCGTGTTTAACTCTGTAGTAAGTTTCATTCTTTACACTAAACAAATTGTTGCAGTGGCTGAATCAAACTTTACAGAGACAGGAAAATGAAGAATTCAAAGAGATTATTGAACTTTACAGAAACAGATTCACGTAGAAGCAGAATTTGGGCAAAACACGCGAGAAGGGAAAGAAAAGAAGCTGGAAATTATTAATTTATAAAGACCAAAACTTTTGGTAAACGGAATGTCTCAACACTT

Coding sequence (CDS)

ATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAA

Protein sequence

MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTIDQEFEQYFSMLML
Homology
[Close]
BLAST of Carg12539 vs. NCBI nr
Match: XP_022934853.1 (uncharacterized protein LOC111441892 [Cucurbita moschata])

HSP 1 Score: 503.8 bits (1296), Expect = 3.3e-139
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 241 IDQEFEQYFSMLML 254

[Close]
BLAST of Carg12539 vs. NCBI nr
Match: XP_023528627.1 (protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498.4 bits (1282), Expect = 1.4e-137
Identity = 251/254 (98.82%), Postives = 253/254 (99.61%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           +G PETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSE+THFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 121 TYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 241 IDQEFEQYFSMLML 254

[Close]
BLAST of Carg12539 vs. NCBI nr
Match: XP_022983598.1 (protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 2.0e-131
Identity = 243/252 (96.43%), Postives = 246/252 (97.62%), Query Frame = 0 

Query: 3   EKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDG 62
           EK QNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPS KHKHCNEGFPSKLAFLY+G
Sbjct: 2   EKNQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSSKHKHCNEGFPSKLAFLYNG 61

Query: 63  FPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 122
            PETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY
Sbjct: 62  LPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 121

Query: 123 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 182
           DSSSTQCMSFGGASS ST+FSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD
Sbjct: 122 DSSSTQCMSFGGASSGSTNFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 181

Query: 183 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 242
           SRE YDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVN+E QSSARAPTID
Sbjct: 182 SREGYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNNEDQSSARAPTID 241

Query: 243 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 253

[Close]
BLAST of Carg12539 vs. NCBI nr
Match: XP_008442533.1 (PREDICTED: uncharacterized protein LOC103486380 [Cucumis melo])

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 205/252 (81.35%), Postives = 223/252 (88.49%), Query Frame = 0 

Query: 5   KQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFP 64
           ++NP EINSFY+ISKL  NP+DLNKKRKLPAEHLGLPSPKHKHC+EGF SK AFLY G P
Sbjct: 2   EENPTEINSFYIISKL--NPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLP 61

Query: 65  ETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA--CTY 124
           ET HMNVQFIK +ANVL FD+GS PES KDSNS  EESDSATSVFHGAKFELNQA  CT+
Sbjct: 62  ETGHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTH 121

Query: 125 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 184
           D+S+TQ MSFGGASSESTHFSVESSTAME  STEQE AF SGENRIET+HK+QEHLLELD
Sbjct: 122 DTSTTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELD 181

Query: 185 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 244
             EDYD AEY + +T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARAPTID
Sbjct: 182 GHEDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTID 241

Query: 245 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 251

[Close]
BLAST of Carg12539 vs. NCBI nr
Match: XP_004137783.2 (PREDICTED: uncharacterized protein LOC101207650 [Cucumis sativus] >KGN58861.1 hypothetical protein Csa_3G734140 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 2.4e-97
Identity = 193/256 (75.39%), Postives = 210/256 (82.03%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNPAEINSFYVISKL++NPFDLNKKRKLPAEHLGLPSPKHKHC+E F SK AFLY
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            G PETEHMNVQFIK +ANVL FD+ S PES KDSNS  EESDSATSVFHGAKFELNQA 
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CT+D+S+T+ MSFGGASSES HFSVESSTAMESS                        L
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSXXXXXXXXXXXXXXXXXXXXXXXQL 271

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           LELDS EDY+ AEY +D+T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARA
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

Query: 241 PTIDQEFEQYFSMLML 255
           PTIDQEFEQYFSMLML
Sbjct: 332 PTIDQEFEQYFSMLML 347

[Close]
BLAST of Carg12539 vs. TAIR10
Match: AT2G37678.1 (far-red elongated hypocotyl 1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-07
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 0 

Query: 135 ASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKV-----QEHLLELDSREDYDF 194
           A SE+T+ + E  T    SS           N IE   +      ++ ++  +S  DY  
Sbjct: 67  ACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESSGSCGEDKMISFESHLDY-- 126

Query: 195 AEYGHDETEQCTDQELEDLFY----------SNGLDPNA--YILSSGRWTVNHEAQS--S 254
             YG    E  +++ +E++ Y          + G   NA  ++LSSGRWTVN +  +   
Sbjct: 127 -IYGTQNLEDFSEKVIENILYLDEQEXXXXDAKGCSSNAAKFVLSSGRWTVNQDDSTLHE 186

[Close]
BLAST of Carg12539 vs. TAIR10
Match: AT5G02200.2 (far-red-elongated hypocotyl1-like)

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-05
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0 

Query: 120 CTYDSSSTQCMSFGGASSESTH---FSVESSTAMESSSTEQEVAFASGENRIETV-HKVQ 179
           C+Y   +T+      +S+  T    +  + S     SS+    A +S E     V HK Q
Sbjct: 73  CSYAMENTKTSDEASSSASFTGPSLYMFKDSIYSTGSSSSGYAATSSIEQCFSKVDHKTQ 132

Query: 180 EHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDP-NAYILSSGRWTV-NHEAQ 239
           E        +D+   E+ + ++E      +EDL     L+P  +YILSS RW+V N +++
Sbjct: 133 E------DTQDFTHMEFIYHDSEFA----VEDL--QEVLNPVESYILSSARWSVSNQDSK 192

Query: 240 SSARAPTIDQEFEQYFSMLML 255
            +   PTIDQEFEQYFS LM+
Sbjct: 193 EATTKPTIDQEFEQYFSTLMM 201

[Close]
BLAST of Carg12539 vs. Swiss-Prot
Match: sp|Q8S4Q6|FHY1_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 0 

Query: 135 ASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKV-----QEHLLELDSREDYDF 194
           A SE+T+ + E  T    SS           N IE   +      ++ ++  +S  DY  
Sbjct: 67  ACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESSGSCGEDKMISFESHLDY-- 126

Query: 195 AEYGHDETEQCTDQELEDLFY----------SNGLDPNA--YILSSGRWTVNHEAQS--S 254
             YG    E  +++ +E++ Y          + G   NA  ++LSSGRWTVN +  +   
Sbjct: 127 -IYGTQNLEDFSEKVIENILYLDEQEXXXXDAKGCSSNAAKFVLSSGRWTVNQDDSTLHE 186

[Close]
BLAST of Carg12539 vs. TrEMBL
Match: tr|A0A1S3B5W9|A0A1S3B5W9_CUCME (uncharacterized protein LOC103486380 OS=Cucumis melo OX=3656 GN=LOC103486380 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 7.7e-108
Identity = 205/252 (81.35%), Postives = 223/252 (88.49%), Query Frame = 0 

Query: 5   KQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFP 64
           ++NP EINSFY+ISKL  NP+DLNKKRKLPAEHLGLPSPKHKHC+EGF SK AFLY G P
Sbjct: 2   EENPTEINSFYIISKL--NPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLP 61

Query: 65  ETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA--CTY 124
           ET HMNVQFIK +ANVL FD+GS PES KDSNS  EESDSATSVFHGAKFELNQA  CT+
Sbjct: 62  ETGHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTH 121

Query: 125 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 184
           D+S+TQ MSFGGASSESTHFSVESSTAME  STEQE AF SGENRIET+HK+QEHLLELD
Sbjct: 122 DTSTTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELD 181

Query: 185 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 244
             EDYD AEY + +T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARAPTID
Sbjct: 182 GHEDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTID 241

Query: 245 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 251

[Close]
BLAST of Carg12539 vs. TrEMBL
Match: tr|A0A0A0LFJ8|A0A0A0LFJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.6e-97
Identity = 193/256 (75.39%), Postives = 210/256 (82.03%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNPAEINSFYVISKL++NPFDLNKKRKLPAEHLGLPSPKHKHC+E F SK AFLY
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            G PETEHMNVQFIK +ANVL FD+ S PES KDSNS  EESDSATSVFHGAKFELNQA 
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CT+D+S+T+ MSFGGASSES HFSVESSTAMESS                        L
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSXXXXXXXXXXXXXXXXXXXXXXXQL 271

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           LELDS EDY+ AEY +D+T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARA
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

Query: 241 PTIDQEFEQYFSMLML 255
           PTIDQEFEQYFSMLML
Sbjct: 332 PTIDQEFEQYFSMLML 347

[Close]
BLAST of Carg12539 vs. TrEMBL
Match: tr|D7THL8|D7THL8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g00610 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 116/256 (45.31%), Postives = 157/256 (61.33%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M+E  +NP+E++S +V  +L TN  DL KKRKL AE L LP PKHK C   F S++ +  
Sbjct: 1   MDETNKNPSELHSSHVCKELNTNIMDLKKKRKLQAELLDLPLPKHKCCGRSFSSQIVYPL 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKF--ELNQ 120
           D   E E ++ Q +K   N    DDGS P+SAKDSNS    SDS  SV+  AKF  E  +
Sbjct: 61  DEDTEIEDLHAQIVKEETNGETIDDGSEPDSAKDSNSLAGYSDSVISVYGEAKFEPECEK 120

Query: 121 ACTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            C Y+   +  +++GG SS    +S++ ST M    ++ ++ F SGE+       ++E L
Sbjct: 121 TCPYNYPYSSSVNWGGNSSRDDLYSLK-STRMTPDVSKDKMTFFSGEHNPLVSQNLEEQL 180

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           LE  +  D+  +EY     E  TD+EL D+ YS+G+ PN Y+LSSGRW+VN +AQ   R 
Sbjct: 181 LEFGNDIDFMCSEYRDGMAEHSTDKELADMPYSSGMKPNNYVLSSGRWSVNQDAQIGTRK 240

Query: 241 PTIDQEFEQYFSMLML 255
           PTIDQEFEQYFSMLML
Sbjct: 241 PTIDQEFEQYFSMLML 255

[Close]
BLAST of Carg12539 vs. TrEMBL
Match: tr|A0A2P5EZ85|A0A2P5EZ85_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_134830 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.1e-45
Identity = 126/257 (49.03%), Postives = 162/257 (63.04%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEE K++P+EI+S  VIS L T      KKRKL AE LGLP+ K K  +    S      
Sbjct: 1   MEENKESPSEIDSRRVISVLNT-----LKKRKLQAEQLGLPTRKQKCWDRAVAS------ 60

Query: 61  DG-FPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA 120
           DG FP+    + +  KG    L  DD S PES KDSNSF E SDSATS ++GAK E    
Sbjct: 61  DGPFPKFCGRH-EVTKGKRKGLAMDDRSEPESMKDSNSFAEVSDSATSAYNGAKMEAEYV 120

Query: 121 CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASG--ENRIETVHKVQEH 180
             Y S S+   S G  S E+T+  ++S    +++S E+E+AF S   E R++    ++E 
Sbjct: 121 KIYYSPSSSSPSCGTESLENTNSPLDSLNVGKANSNEEELAFDSSQHEERMQAYLNLEEQ 180

Query: 181 LLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSAR 240
           LLE  +  DY  +EYG +E EQCTD+ELED+  ++GL+ N Y+LSSGRW+VN EAQS +R
Sbjct: 181 LLEFGNHGDYINSEYGDEELEQCTDKELEDILCASGLNRNVYVLSSGRWSVNQEAQSDSR 240

Query: 241 APTIDQEFEQYFSMLML 255
            PTIDQEFEQYFSMLML
Sbjct: 241 KPTIDQEFEQYFSMLML 245

[Close]
BLAST of Carg12539 vs. TrEMBL
Match: tr|A0A2P5APW0|A0A2P5APW0_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_311780 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 122/256 (47.66%), Postives = 158/256 (61.72%), Query Frame = 0 

Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           M E K++P+EI+S  VIS L T      KKRKL AE LGLP+ KHK  +    S      
Sbjct: 1   MGENKESPSEIDSRRVISVLNT-----LKKRKLQAEQLGLPTLKHKCWDRAVAS------ 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           DG     + + +  KG    L  DD S  ES KDSNSF E+SDSATS ++GAK E     
Sbjct: 61  DGPFAKFYGSHEVTKGKRKGLAMDDRSERESMKDSNSFAEDSDSATSAYNGAKMEAENVK 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASG--ENRIETVHKVQEHL 180
            YDS S+   S G  S E+T+  ++S    ++ S E+E+AF S   E R++    ++E L
Sbjct: 121 IYDSPSSSSPSCGTESLENTNSPLDSLNVRKADSREEELAFDSSQHEERMQAYLNLEEQL 180

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           +E  +  DY  +E+G +E EQ    ELED+ Y+NGL+PN Y+LSSGRW+VN EAQS +R 
Sbjct: 181 IEFGNHGDYITSEHGDEELEQRXXXELEDILYTNGLNPNVYVLSSGRWSVNQEAQSDSRK 240

Query: 241 PTIDQEFEQYFSMLML 255
           PTIDQEFEQYFSMLML
Sbjct: 241 PTIDQEFEQYFSMLML 245

The following BLAST results are available for this feature:
BLAST of Carg12539 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934853.13.3e-139100.00uncharacterized protein LOC111441892 [Cucurbita moschata][more]
XP_023528627.11.4e-13798.82protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE [Cucurbita pepo subsp. pepo][more]
XP_022983598.12.0e-13196.43protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucurbita maxima][more]
XP_008442533.11.2e-10781.35PREDICTED: uncharacterized protein LOC103486380 [Cucumis melo][more]
XP_004137783.22.4e-9775.39PREDICTED: uncharacterized protein LOC101207650 [Cucumis sativus] >KGN58861.1 hy... [more]
BLAST of Carg12539 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37678.16.3e-0733.09far-red elongated hypocotyl 1[more]
AT5G02200.27.7e-0533.33far-red-elongated hypocotyl1-like[more]
BLAST of Carg12539 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8S4Q6|FHY1_ARATH1.1e-0533.09Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE... [more]
BLAST of Carg12539 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5W9|A0A1S3B5W9_CUCME7.7e-10881.35uncharacterized protein LOC103486380 OS=Cucumis melo OX=3656 GN=LOC103486380 PE=... [more]
tr|A0A0A0LFJ8|A0A0A0LFJ8_CUCSA1.6e-9775.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1[more]
tr|D7THL8|D7THL8_VITVI2.0e-4745.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g00610 PE=4 SV=... [more]
tr|A0A2P5EZ85|A0A2P5EZ85_9ROSA1.1e-4549.03Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_134830 PE=4 S... [more]
tr|A0A2P5APW0|A0A2P5APW0_PARAD1.9e-4547.66Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_311780 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009639response to red or far red light
Vocabulary: INTERPRO
TermDefinition
IPR037766FHY1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009639 response to red or far red light
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12539-RACarg12539-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037766Protein FAR-RED ELONGATED HYPOCOTYL 1PANTHERPTHR37723FAMILY NOT NAMEDcoord: 1..254

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12539Cla017906Watermelon (97103) v1carwmB0996
Carg12539Csa3G734140Cucumber (Chinese Long) v2carcuB1011
Carg12539Csa4G296180Cucumber (Chinese Long) v2carcuB1013
Carg12539MELO3C009249Melon (DHL92) v3.5.1carmeB0973
Carg12539ClCG10G021240Watermelon (Charleston Gray)carwcgB0971
Carg12539CSPI03G32220Wild cucumber (PI 183967)carcpiB1035
Carg12539CSPI04G14790Wild cucumber (PI 183967)carcpiB1037
Carg12539Cucsa.066320Cucumber (Gy14) v1carcgyB1113
Carg12539Cucsa.175540Cucumber (Gy14) v1carcgyB1116
Carg12539CmaCh14G001370Cucurbita maxima (Rimu)carcmaB1380
Carg12539CmaCh06G002880Cucurbita maxima (Rimu)carcmaB1388
Carg12539CmoCh06G002890Cucurbita moschata (Rifu)carcmoB1343
Carg12539CmoCh14G001310Cucurbita moschata (Rifu)carcmoB1335
Carg12539Cp4.1LG08g11640Cucurbita pepo (Zucchini)carcpeB1393
Carg12539Cp4.1LG03g02550Cucurbita pepo (Zucchini)carcpeB1391
Carg12539CsGy3G030050Cucumber (Gy14) v2carcgybB0984
Carg12539CsGy4G014260Cucumber (Gy14) v2carcgybB0985
Carg12539MELO3C009249.2Melon (DHL92) v3.6.1carmedB0983
Carg12539CsaV3_4G025130Cucumber (Chinese Long) v3carcucB1043
Carg12539CsaV3_3G034800Cucumber (Chinese Long) v3carcucB1041
Carg12539Cla97C10G204440Watermelon (97103) v2carwmbB1050
Carg12539Bhi11G001882Wax gourdcarwgoB1167
Carg12539Bhi03G001571Wax gourdcarwgoB1171
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12539Carg01057Silver-seed gourdcarcarB200
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12539Watermelon (97103) v2carwmbB1052
Carg12539Watermelon (97103) v2carwmbB1053
Carg12539Watermelon (97103) v2carwmbB1054
Carg12539Watermelon (97103) v2carwmbB1055
Carg12539Wax gourdcarwgoB1169
Carg12539Silver-seed gourdcarcarB100
Carg12539Silver-seed gourdcarcarB449
Carg12539Silver-seed gourdcarcarB533
Carg12539Silver-seed gourdcarcarB644
Carg12539Cucumber (Gy14) v2carcgybB0983
Carg12539Cucumber (Gy14) v2carcgybB0987
Carg12539Cucurbita maxima (Rimu)carcmaB1382
Carg12539Cucurbita maxima (Rimu)carcmaB1383
Carg12539Cucurbita maxima (Rimu)carcmaB1389
Carg12539Cucurbita moschata (Rifu)carcmoB1337
Carg12539Cucurbita moschata (Rifu)carcmoB1338
Carg12539Cucurbita moschata (Rifu)carcmoB1339
Carg12539Cucurbita moschata (Rifu)carcmoB1340
Carg12539Cucurbita moschata (Rifu)carcmoB1344
Carg12539Cucurbita pepo (Zucchini)carcpeB1383
Carg12539Cucurbita pepo (Zucchini)carcpeB1386
Carg12539Cucurbita pepo (Zucchini)carcpeB1390
Carg12539Cucurbita pepo (Zucchini)carcpeB1392
Carg12539Wild cucumber (PI 183967)carcpiB1034
Carg12539Wild cucumber (PI 183967)carcpiB1039
Carg12539Cucumber (Chinese Long) v2carcuB1010
Carg12539Cucumber (Chinese Long) v2carcuB1015
Carg12539Cucumber (Chinese Long) v3carcucB1040
Carg12539Cucumber (Chinese Long) v3carcucB1044
Carg12539Bottle gourd (USVL1VR-Ls)carlsiB910
Carg12539Bottle gourd (USVL1VR-Ls)carlsiB912
Carg12539Bottle gourd (USVL1VR-Ls)carlsiB913
Carg12539Bottle gourd (USVL1VR-Ls)carlsiB915
Carg12539Melon (DHL92) v3.5.1carmeB0971
Carg12539Melon (DHL92) v3.5.1carmeB0975
Carg12539Melon (DHL92) v3.6.1carmedB0981
Carg12539Melon (DHL92) v3.6.1carmedB0985
Carg12539Watermelon (Charleston Gray)carwcgB0973
Carg12539Watermelon (Charleston Gray)carwcgB0974
Carg12539Watermelon (Charleston Gray)carwcgB0975
Carg12539Watermelon (97103) v1carwmB0997
Carg12539Watermelon (97103) v1carwmB0999
Carg12539Watermelon (97103) v1carwmB1000