Cp4.1LG03g00430 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g00430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Location	Cp4.1LG03 : 1684449 .. 1685799 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTACTCCTAAATTACCTGAAGATTCAATAATACACTGAACTTCTTTTCCTAGTTACAGGTCTTACATCTGCTTTAACAATTTCTATTCATGAGGACTAACTACCTTCCGTTTCTTCTATGGAGAATAATGAGTTCATGAGTTAGATTGAGGTTACTTCATATACTTGGGCTAAACTATCATTCAATGGTGAACATTGAACACAAATTGAGTCAATCATGTATGTTTTGTTAGCTATTTTCTAGTATAAGGAGTTGAATCTCACTAATGAGCAGCTGGATCTTTAAATGGTCATAAACTTGCGTTGGTGTTTCCATTTGGACCGATTATGAGGTTCAGCTAAAAGATGACAAATTGTTTGAAAGTTGACTTTGCTTAGCACTGTTAACCTTCAGATTCGCCATCTTTTTTATGAATAAGCAGGATTAGAGGATACTTCTCTATCACTTTTGTTTTACTTCTAATTATCAACTGCCGTCCAATCTTTATTTATCCCTTGAGAGATAATGGTGTACCACCTTCGCTTCCTCTGTAGACAATCGTGCCTTACTACTCGTATATTATCCTTTGACACTTGGTTCGAACTTCAGCTAATGACAATAACCTTGTACACATGGCACAGGTAAGCCAATCATTGCAGGAAAAATGGTCGTTGACATTGCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCAGTAAGTTACTACTCATTTCATGTTTACCACTTGTGTTTGTATTTTTCTTGTAGTTTCTGGTTTTTATTTTCCTAAAATAAGTTAAAAGGAACAAGGTTTTATCGTGCCTCAATTGATCTAGTAAAGTCAACTGTCGTCTTCAAAGGATACGTGCTCTACCTTCCATTTTCTACTTCAGAGCTCCAACTCCCAGTTATAGAAAAAAAAAAAAGAGGCTTTCTCATCTGAAGAGGTTCATGATGACCTTATTATCCAAAGGAACTCGGATTGATCGGGACGAAAAATCTTAGATATATACACACAATCATTGATTTCTTTTTCTTTTAATTATCATGCACTCTAACTATTTCCTTTTCCTTGCAGGGTTCATATCATATGCAGATAACCGTTGTTGATGGAGATGATAACAAACTTGCATGCTTTGGCTTTGATTATGAATTGGTGATTGCATCACTATTTGGAGATAGC

mRNA sequence

ATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAAAAATGGTCGTTGACATTGCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCAGGTTCATATCATATGCAGATAACCGTTGTTGATGGAGATGATAACAAACTTGCATGCTTTGGCTTTGATTATGAATTGGTGATTGCATCACTATTTGGAGATAGC

Coding sequence (CDS)

ATGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAAAAATGGTCGTTGACATTGCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCAGGTTCATATCATATGCAGATAACCGTTGTTGATGGAGATGATAACAAACTTGCATGCTTTGGCTTTGATTATGAATTGGTGATTGCATCACTATTTGGAGATAGC

Protein sequence

MVKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPYSFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS

Homology

[Close]

BLAST of Cp4.1LG03g00430 vs. TrEMBL
Match: A0A0A0LBM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782750 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.0e-54
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGV+ISP+P+VRG P NM FNLIIGKPIIAGKMVVDI+YFGWH+Y DSHDICVETSCPY
Sbjct: 104 VKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPY 163

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
             GDFAL PL+TPLAFFLPGSYHMQIT+VDGDDNKL CFGFDYELVIASLFGDS
Sbjct: 164 LSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS 217

[Close]

BLAST of Cp4.1LG03g00430 vs. TrEMBL
Match: I3SNQ8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGVQISP P+ RG+P   T +    + +  GK+VVD++YFGWH+Y ++HD+C E+SCP 
Sbjct: 43  VKGVQISPDPVARGQPATFTISANTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPI 102

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLAC--FGFD 104
           S GDF +A  Q   A+  PGSY +++ + DG++N+L C  FGFD
Sbjct: 103 SVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCIKFGFD 146

[Close]

BLAST of Cp4.1LG03g00430 vs. TrEMBL
Match: A0A072VUX7_MEDTR (MD-like lipid recognition domain protein/ML domain protein OS=Medicago truncatula GN=MTR_1g055435 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGVQISP P+ RG+P   T +    + +  GK+VVD++YFGWH+Y ++HD+C E+SCP 
Sbjct: 43  VKGVQISPDPVARGQPATFTISANTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPI 102

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLAC--FGFD 104
           S GDF +A  Q   A+  PGSY +++ + DG++N+L C  FGFD
Sbjct: 103 SVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCIKFGFD 146

[Close]

BLAST of Cp4.1LG03g00430 vs. TrEMBL
Match: A5AFH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g01020 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 48/114 (42.11%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           V+GV+ISP P+VRG P   + +   G+ I  GK+V+D++YFGWH++ ++HD+C E+SCP 
Sbjct: 41  VQGVEISPYPVVRGSPATFSISANTGETITGGKLVIDVSYFGWHIHSETHDLCEESSCPV 100

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
           S GDF ++  Q    F  PG+Y++++ +VD  + +L C GFD+ +   S   DS
Sbjct: 101 SSGDFVISHTQVLPGFTPPGTYNLKMKLVDKKNKELTCIGFDFSIGFVSPVADS 154

[Close]

BLAST of Cp4.1LG03g00430 vs. TrEMBL
Match: C6SXR8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G083300 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGV+ISP PI RG+P   +     GK +  GK+V+D++YFGWH++ ++HD+C ET+CP 
Sbjct: 41  VKGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPV 100

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
           S GDF +A  Q    F  PGSY +++ + DG+ ++L C  F +++   S   DS
Sbjct: 101 SAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADS 154

[Close]

BLAST of Cp4.1LG03g00430 vs. TAIR10
Match: AT5G06480.1 (AT5G06480.1 Immunoglobulin E-set superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VK V ISP+PI  G P   T +   G+ I  GK+V++++YFGWH++ ++HD+C ETSCP 
Sbjct: 40  VKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVHSETHDLCTETSCPI 99

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGD 115
             GDF +A  Q    +  PGSY +++ ++D    +L C  F +++ + +   D
Sbjct: 100 QTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDIGLRASVAD 152

[Close]

BLAST of Cp4.1LG03g00430 vs. TAIR10
Match: AT3G11780.2 (AT3G11780.2 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein)

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-20
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           V+GV I+P PI RG P     +      I +GK+V++++YFGWH++ ++HD+C ETSCP 
Sbjct: 40  VQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPV 99

Query: 62  SFGDFALA-----PLQTP-------------LAFFLPGSYHMQITVVDGDDNKLACFGFD 115
           + GDF +A     P  TP               F + GSY +++ ++DG   +L C  F 
Sbjct: 100 AIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVEGSYSLKMKMLDGRKKELTCIKFS 159

[Close]

BLAST of Cp4.1LG03g00430 vs. TAIR10
Match: AT3G44100.1 (AT3G44100.1 MD-2-related lipid recognition domain-containing protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           V GV+ISP P+V G           G+ I  GK+V+ + Y G  ++ ++HD+C ET+CP 
Sbjct: 39  VTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPVHTETHDLCDETACPV 98

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIAS 111
           + G F L+  QT  +   PG+Y +++T+ D +  +L C  F +++ + S
Sbjct: 99  APGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKITVGS 147

[Close]

BLAST of Cp4.1LG03g00430 vs. NCBI nr
Match: gi|659084533|ref|XP_008442939.1| (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 100/114 (87.72%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGV+ISPSPIVRG P NMTFNL+IG PIIAGKMVVDI+YFGWH+Y DSHDICVETSCPY
Sbjct: 42  VKGVEISPSPIVRGHPTNMTFNLLIGNPIIAGKMVVDISYFGWHIYSDSHDICVETSCPY 101

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
             GDFAL PL+TPLAFFLPGSYHMQIT+VDGDDNKL CFGFDYELVIASLFGDS
Sbjct: 102 LSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS 155

[Close]

BLAST of Cp4.1LG03g00430 vs. NCBI nr
Match: gi|449437488|ref|XP_004136524.1| (PREDICTED: uncharacterized protein LOC101210162 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGV+ISP+P+VRG P NM FNLIIGKPIIAGKMVVDI+YFGWH+Y DSHDICVETSCPY
Sbjct: 42  VKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPY 101

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
             GDFAL PL+TPLAFFLPGSYHMQIT+VDGDDNKL CFGFDYELVIASLFGDS
Sbjct: 102 LSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS 155

[Close]

BLAST of Cp4.1LG03g00430 vs. NCBI nr
Match: gi|700204095|gb|KGN59228.1| (hypothetical protein Csa_3G782750 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGV+ISP+P+VRG P NM FNLIIGKPIIAGKMVVDI+YFGWH+Y DSHDICVETSCPY
Sbjct: 104 VKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPY 163

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLACFGFDYELVIASLFGDS 116
             GDFAL PL+TPLAFFLPGSYHMQIT+VDGDDNKL CFGFDYELVIASLFGDS
Sbjct: 164 LSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS 217

[Close]

BLAST of Cp4.1LG03g00430 vs. NCBI nr
Match: gi|922401383|ref|XP_013467828.1| (MD-like lipid recognition domain protein/ML domain protein [Medicago truncatula])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGVQISP P+ RG+P   T +    + +  GK+VVD++YFGWH+Y ++HD+C E+SCP 
Sbjct: 43  VKGVQISPDPVARGQPATFTISANTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPI 102

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLAC--FGFD 104
           S GDF +A  Q   A+  PGSY +++ + DG++N+L C  FGFD
Sbjct: 103 SVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCIKFGFD 146

[Close]

BLAST of Cp4.1LG03g00430 vs. NCBI nr
Match: gi|388507668|gb|AFK41900.1| (unknown [Medicago truncatula])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 2   VKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDICVETSCPY 61
           VKGVQISP P+ RG+P   T +    + +  GK+VVD++YFGWH+Y ++HD+C E+SCP 
Sbjct: 43  VKGVQISPDPVARGQPATFTISANTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPI 102

Query: 62  SFGDFALAPLQTPLAFFLPGSYHMQITVVDGDDNKLAC--FGFD 104
           S GDF +A  Q   A+  PGSY +++ + DG++N+L C  FGFD
Sbjct: 103 SVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCIKFGFD 146

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g00430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g00430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBM1_CUCSA	6.0e-54	86.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782750 PE=4 SV=1	[more]
I3SNQ8_MEDTR	8.4e-24	49.04	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A072VUX7_MEDTR	8.4e-24	49.04	MD-like lipid recognition domain protein/ML domain protein OS=Medicago truncatul...	[more]
A5AFH3_VITVI	1.4e-23	42.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g01020 PE=4 SV=...	[more]
C6SXR8_SOYBN	1.9e-23	42.98	Uncharacterized protein OS=Glycine max GN=GLYMA_10G083300 PE=2 SV=1	[more]

BLAST of Cp4.1LG03g00430 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06480.1	1.1e-22	38.05	Immunoglobulin E-set superfamily protein	[more]
AT3G11780.2	3.8e-20	34.35	MD-2-related lipid recognition domain-containing protein / ML domain...	[more]
AT3G44100.1	1.5e-16	33.94	MD-2-related lipid recognition domain-containing protein	[more]

BLAST of Cp4.1LG03g00430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084533\|ref\|XP_008442939.1\|	3.8e-54	87.72	PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein D...	[more]
gi\|449437488\|ref\|XP_004136524.1\|	8.5e-54	86.84	PREDICTED: uncharacterized protein LOC101210162 [Cucumis sativus]	[more]
gi\|700204095\|gb\|KGN59228.1\|	8.5e-54	86.84	hypothetical protein Csa_3G782750 [Cucumis sativus]	[more]
gi\|922401383\|ref\|XP_013467828.1\|	1.2e-23	49.04	MD-like lipid recognition domain protein/ML domain protein [Medicago truncatula]	[more]
gi\|388507668\|gb\|AFK41900.1\|	1.2e-23	49.04	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014756	Ig_E-set
IPR003172	ML_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g00430.1	Cp4.1LG03g00430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 2..105 score: 7.4
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 2..104 score: 7.9
IPR014756	Immunoglobulin E-set	unknown	SSF81296	E set domains	coord: 2..106 score: 8.86
None	No IPR available	GENE3D	G3DSA:2.70.220.10		coord: 2..106 score: 1.
None	No IPR available	PANTHER	PTHR11306	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	coord: 2..109 score: 1.4
None	No IPR available	PANTHER	PTHR11306:SF13	SUBFAMILY NOT NAMED	coord: 2..109 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g00430	Cucsa.242020	Cucumber (Gy14) v1	cgycpeB0644
Cp4.1LG03g00430	CmaCh14G003700	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g00430	CmaCh06G005350	Cucurbita maxima (Rimu)	cmacpeB830
Cp4.1LG03g00430	CmoCh14G003700	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g00430	CmoCh06G005380	Cucurbita moschata (Rifu)	cmocpeB783
Cp4.1LG03g00430	Csa3G782750	Cucumber (Chinese Long) v2	cpecuB597
Cp4.1LG03g00430	MELO3C009555	Melon (DHL92) v3.5.1	cpemeB571
Cp4.1LG03g00430	ClCG10G018170	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g00430	CSPI03G35780	Wild cucumber (PI 183967)	cpecpiB599
Cp4.1LG03g00430	Lsi03G018050	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g00430	MELO3C009555.2	Melon (DHL92) v3.6.1	cpemedB678
Cp4.1LG03g00430	Bhi11G002039	Wax gourd	cpewgoB0745
Cp4.1LG03g00430	Carg03614	Silver-seed gourd	carcpeB0353

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g00430	Cp4.1LG08g09660	Cucurbita pepo (Zucchini)	cpecpeB487

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g00430	Cucurbita pepo (Zucchini)	cpecpeB302
Cp4.1LG03g00430	Cucurbita maxima (Rimu)	cmacpeB572
Cp4.1LG03g00430	Cucurbita moschata (Rifu)	cmocpeB523
Cp4.1LG03g00430	Bottle gourd (USVL1VR-Ls)	cpelsiB488
Cp4.1LG03g00430	Watermelon (Charleston Gray)	cpewcgB551
Cp4.1LG03g00430	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g00430	Watermelon (97103) v1	cpewmB620
Cp4.1LG03g00430	Cucumber (Gy14) v2	cgybcpeB395
Cp4.1LG03g00430	Silver-seed gourd	carcpeB0956
Cp4.1LG03g00430	Silver-seed gourd	carcpeB1280
Cp4.1LG03g00430	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g00430	Wax gourd	cpewgoB0806