Carg03614 (gene) Silver-seed gourd

Overview
NameCarg03614
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMD-2-related lipid recognition domain-containing protein / ML domain-containing protein
LocationCucurbita_argyrosperma_scaffold_006 : 1010023 .. 1010950 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACAGCTAAGTATGATATCACGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTACTCCTAAATTATCTGAAGATTCAATAATACAATCACTGAACTTCTTTTCCTAGTTACAGGTCTTACATCTGCTTTAACAATTTCTATTCATGAGGACTAACTACCTTCCGTTTCTTCTATGGAGAATAATGAGTTCATGAGTTAGATTGAGGTTACTTCATATACTTGGGCTAAACTATCATTCAAAGGTGAACATTGAACACACATTGAGTCAATCATGTATGTTTAGTTAGCTATTTTCTAGTATAAGGAGTTGAGAATCTCACTAATGAGCAGCTGGATCTTTAAATGGTCATAAATTTGCGTTGGTGTTTCCATTTGGACCGATTATGAGGTTCAGCTAAAAGATGACAAATTGTTTGAAAGTTGACTTTGCTTAGCACTGTTAACCTTCAGATTCGCCATCTTTTTATGAATAAGCAGAATTAGAGGACACTTCTCTATCACTTTTGTTTTACTTCTAATTATCAACTGCCGTCCAATCTTTATTTATCCCTTGAGAGATAAAGGTGTACCACCTTCCCTTCCTCTGTAGACAATCGTGCCTTACTACTCGTATATTATCCTTTGACACTTGGTTCGAACTTCAGCTAATGACAATAACCTTGTACACATGGCACAGGTAAGCCAATCCTTGCAGGAAAAATGGTTGTTGACATTTCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCGGTAAGTTACTACTCATTTTATGTTTACCACTTGTGTTTGTAT

mRNA sequence

GAGACAGCTAAGTATGATATCACGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTAAGCCAATCCTTGCAGGAAAAATGGTTGTTGACATTTCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCGGTAAGTTACTACTCATTTTATGTTTACCACTTGTGTTTGTAT

Coding sequence (CDS)

GAGACAGCTAAGTATGATATCACGGTGAAAGGAGTTCAGATATCTCCCAGCCCCATAGTTAGGGGTCGCCCAATAAATATGACCTTCAATCTAATTATAGGTAAGCCAATCCTTGCAGGAAAAATGGTTGTTGACATTTCATATTTTGGGTGGCACATGTATAGGGACAGCCACGACATTTGTGTTGAGACGTCCTGCCCTTACTCGTTTGGTGATTTTGCACTCGCTCCATTGCAAACGCCTCTGGCATTCTTTTTACCGGTAAGTTACTACTCATTTTATGTTTACCACTTGTGTTTGTAT

Protein sequence

ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICVETSCPYSFGDFALAPLQTPLAFFLPVSYYSFYVYHLCLY
Homology
[Close]
BLAST of Carg03614 vs. NCBI nr
Match: XP_022935467.1 (uncharacterized protein LOC111442332 [Cucurbita moschata] >XP_022935468.1 uncharacterized protein LOC111442332 [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 8.0e-44
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETAKYDI VKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI
Sbjct: 34  ETAKYDIMVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 93

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPYSFGDFALAPLQTPLAFFLP SY+
Sbjct: 94  CVETSCPYSFGDFALAPLQTPLAFFLPGSYH 124

[Close]
BLAST of Carg03614 vs. NCBI nr
Match: XP_023522645.1 (uncharacterized protein LOC111786644 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 3.0e-43
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETAKYDI VKGVQISPSPIVRGRPINMTFNLIIGKPI+AGKMVVDI+YFGWHMYRDSHDI
Sbjct: 20  ETAKYDIMVKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDI 79

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPYSFGDFALAPLQTPLAFFLP SY+
Sbjct: 80  CVETSCPYSFGDFALAPLQTPLAFFLPGSYH 110

[Close]
BLAST of Carg03614 vs. NCBI nr
Match: XP_023528903.1 (uncharacterized protein LOC111791686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 3.0e-43
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETAKYDI VKGVQISPSPIVRGRPINMTFNLIIGKPI+AGKMVVDI+YFGWHMYRDSHDI
Sbjct: 34  ETAKYDIMVKGVQISPSPIVRGRPINMTFNLIIGKPIIAGKMVVDIAYFGWHMYRDSHDI 93

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPYSFGDFALAPLQTPLAFFLP SY+
Sbjct: 94  CVETSCPYSFGDFALAPLQTPLAFFLPGSYH 124

[Close]
BLAST of Carg03614 vs. NCBI nr
Match: XP_022983145.1 (uncharacterized protein LOC111481784 [Cucurbita maxima] >XP_022983146.1 uncharacterized protein LOC111481784 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 6.8e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETAKYDI VKGVQISPSPIVRGRPI MTFNLIIGKPI+AGKMVVDISYFGWHMYRDSHDI
Sbjct: 34  ETAKYDIMVKGVQISPSPIVRGRPITMTFNLIIGKPIIAGKMVVDISYFGWHMYRDSHDI 93

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPYSFGDFALAPLQTPLAFFLP SY+
Sbjct: 94  CVETSCPYSFGDFALAPLQTPLAFFLPGSYH 124

[Close]
BLAST of Carg03614 vs. NCBI nr
Match: XP_022151451.1 (uncharacterized protein LOC111019382 [Momordica charantia] >XP_022151452.1 uncharacterized protein LOC111019382 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 7.8e-39
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETA YDI VKGV+ISPSPIVRG P NMTFNLIIGKPI+AGKMVVDISYFGWH+Y DSHDI
Sbjct: 34  ETATYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDI 93

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPYSFGDFAL PL+TPLAFF P SY+
Sbjct: 94  CVETSCPYSFGDFALTPLRTPLAFFFPGSYH 124

[Close]
BLAST of Carg03614 vs. TAIR10
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-20
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           E A+Y++ VK V ISP+PI  G P   T +   G+ I  GK+V+++SYFGWH++ ++HD+
Sbjct: 32  ENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVHSETHDL 91

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSY 91
           C ETSCP   GDF +A  Q    +  P SY
Sbjct: 92  CTETSCPIQTGDFLVAHSQVLPGYTPPGSY 121

[Close]
BLAST of Carg03614 vs. TAIR10
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein)

HSP 1 Score: 86.7 bits (213), Expect = 9.2e-18
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 4   KYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICVE 63
           +Y++ V+GV I+P PI RG P     +      I +GK+V+++SYFGWH++ ++HD+C E
Sbjct: 35  EYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSETHDLCDE 94

Query: 64  TSCPYSFGDFALAPLQTPLAFFLP---------VSYYSFYV 96
           TSCP + GDF +A  Q    +  P         ++YY F+V
Sbjct: 95  TSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHV 135

[Close]
BLAST of Carg03614 vs. TAIR10
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-10
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0 

Query: 7   ITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICVETSC 66
           + V GV+ISP P+V G           G+ I  GK+V+ + Y G  ++ ++HD+C ET+C
Sbjct: 37  VKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPVHTETHDLCDETAC 96

Query: 67  PYSFGDFALAPLQTPLAFFLPVSY 91
           P + G F L+  QT  +   P +Y
Sbjct: 97  PVAPGSFVLSHSQTLPSITPPGTY 120

[Close]
BLAST of Carg03614 vs. TrEMBL
Match: tr|A0A0A0LBM1|A0A0A0LBM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782750 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.7e-38
Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETAKYDITVKGV+ISP+P+VRG P NM FNLIIGKPI+AGKMVVDISYFGWH+Y DSHDI
Sbjct: 96  ETAKYDITVKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDI 155

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPY  GDFAL PL+TPLAFFLP SY+
Sbjct: 156 CVETSCPYLSGDFALPPLRTPLAFFLPGSYH 186

[Close]
BLAST of Carg03614 vs. TrEMBL
Match: tr|A0A1S3B7M8|A0A1S3B7M8_CUCME (uncharacterized protein LOC103486693 OS=Cucumis melo OX=3656 GN=LOC103486693 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38
Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 1   ETAKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDI 60
           ETA+YDITVKGV+ISPSPIVRG P NMTFNL+IG PI+AGKMVVDISYFGWH+Y DSHDI
Sbjct: 34  ETAEYDITVKGVEISPSPIVRGHPTNMTFNLLIGNPIIAGKMVVDISYFGWHIYSDSHDI 93

Query: 61  CVETSCPYSFGDFALAPLQTPLAFFLPVSYY 92
           CVETSCPY  GDFAL PL+TPLAFFLP SY+
Sbjct: 94  CVETSCPYLSGDFALPPLRTPLAFFLPGSYH 124

[Close]
BLAST of Carg03614 vs. TrEMBL
Match: tr|I1JGG0|I1JGG0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100788929 PE=4 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 3  AKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICV 62
          A YD+ VKGV+I P PI RG+P   +     GK +  GK+ +D+SYFGWH++ ++HD+C 
Sbjct: 6  ADYDVEVKGVEIYPDPIARGQPATFSIAATTGKALSGGKLAIDVSYFGWHIHSETHDLCG 65

Query: 63 ETSCPYSFGDFALAPLQTPLAFFLPVSY 91
          ET+CP S GDF +A  Q    F LPVSY
Sbjct: 66 ETTCPVSVGDFVIAHSQVLPGFTLPVSY 93

[Close]
BLAST of Carg03614 vs. TrEMBL
Match: tr|A0A0B2RVV3|A0A0B2RVV3_GLYSO (Putative phosphatidylglycerol/phosphatidylinositol transfer protein OS=Glycine soja OX=3848 GN=glysoja_037808 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 3  AKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICV 62
          A YD+ VKGV+I P PI RG+P   +     GK +  GK+ +D+SYFGWH++ ++HD+C 
Sbjct: 6  ADYDVEVKGVEIYPDPIARGQPATFSIAATTGKALSGGKLAIDVSYFGWHIHSETHDLCG 65

Query: 63 ETSCPYSFGDFALAPLQTPLAFFLPVSY 91
          ET+CP S GDF +A  Q    F LPVSY
Sbjct: 66 ETTCPVSVGDFVIAHSQVLPGFTLPVSY 93

[Close]
BLAST of Carg03614 vs. TrEMBL
Match: tr|A0A1S2Y125|A0A1S2Y125_CICAR (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cicer arietinum OX=3827 GN=LOC101499372 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0 

Query: 3   AKYDITVKGVQISPSPIVRGRPINMTFNLIIGKPILAGKMVVDISYFGWHMYRDSHDICV 62
           A Y++ VKGVQISP PI RG+P   T      + +  GK+V+D+SYFGWH+Y ++HD+C 
Sbjct: 34  ANYNVDVKGVQISPDPIARGQPATFTIAATTSQALSGGKLVIDVSYFGWHVYSETHDLCG 93

Query: 63  ETSCPYSFGDFALAPLQTPLAFFLPVSY 91
           ETSCP S GDF +A  Q    F  P SY
Sbjct: 94  ETSCPISVGDFVIAHSQVLPGFTPPGSY 121

The following BLAST results are available for this feature:
BLAST of Carg03614 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935467.18.0e-4496.70uncharacterized protein LOC111442332 [Cucurbita moschata] >XP_022935468.1 unchar... [more]
XP_023522645.13.0e-4394.51uncharacterized protein LOC111786644 [Cucurbita pepo subsp. pepo][more]
XP_023528903.13.0e-4394.51uncharacterized protein LOC111791686 [Cucurbita pepo subsp. pepo][more]
XP_022983145.16.8e-4394.51uncharacterized protein LOC111481784 [Cucurbita maxima] >XP_022983146.1 uncharac... [more]
XP_022151451.17.8e-3985.71uncharacterized protein LOC111019382 [Momordica charantia] >XP_022151452.1 uncha... [more]
BLAST of Carg03614 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06480.17.5e-2045.56Immunoglobulin E-set superfamily protein[more]
AT3G11780.29.2e-1838.61MD-2-related lipid recognition domain-containing protein / ML domain-containing ... [more]
AT3G44100.19.2e-1035.71MD-2-related lipid recognition domain-containing protein[more]
BLAST of Carg03614 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03614 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBM1|A0A0A0LBM1_CUCSA5.7e-3883.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782750 PE=4 SV=1[more]
tr|A0A1S3B7M8|A0A1S3B7M8_CUCME7.4e-3883.52uncharacterized protein LOC103486693 OS=Cucumis melo OX=3656 GN=LOC103486693 PE=... [more]
tr|I1JGG0|I1JGG0_SOYBN4.5e-1950.00Uncharacterized protein OS=Glycine max OX=3847 GN=100788929 PE=4 SV=2[more]
tr|A0A0B2RVV3|A0A0B2RVV3_GLYSO4.5e-1950.00Putative phosphatidylglycerol/phosphatidylinositol transfer protein OS=Glycine s... [more]
tr|A0A1S2Y125|A0A1S2Y125_CICAR1.0e-1851.14putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03614-RACarg03614-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003172MD-2-related lipid-recognition domainPFAMPF02221E1_DerP2_DerF2coord: 7..92
e-value: 9.6E-6
score: 26.0
NoneNo IPR availablePANTHERPTHR11306NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATEDcoord: 2..90
NoneNo IPR availablePANTHERPTHR11306:SF27MD-2-RELATED LIPID RECOGNITION DOMAIN-CONTAINING PROTEINcoord: 2..90
IPR014756Immunoglobulin E-setSUPERFAMILYSSF81296E set domainscoord: 5..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03614Csa3G782750Cucumber (Chinese Long) v2carcuB0276
Carg03614MELO3C009555Melon (DHL92) v3.5.1carmeB0251
Carg03614ClCG10G018170Watermelon (Charleston Gray)carwcgB0240
Carg03614CSPI03G35780Wild cucumber (PI 183967)carcpiB0280
Carg03614Cucsa.242020Cucumber (Gy14) v1carcgyB0294
Carg03614CmaCh06G005350Cucurbita maxima (Rimu)carcmaB0350
Carg03614CmaCh14G003700Cucurbita maxima (Rimu)carcmaB0343
Carg03614CmoCh06G005380Cucurbita moschata (Rifu)carcmoB0351
Carg03614CmoCh14G003700Cucurbita moschata (Rifu)carcmoB0347
Carg03614Lsi03G018050Bottle gourd (USVL1VR-Ls)carlsiB225
Carg03614Cp4.1LG03g00430Cucurbita pepo (Zucchini)carcpeB0353
Carg03614Cp4.1LG08g09660Cucurbita pepo (Zucchini)carcpeB0354
Carg03614MELO3C009555.2Melon (DHL92) v3.6.1carmedB0261
Carg03614CsaV3_3G038130Cucumber (Chinese Long) v3carcucB0279
Carg03614Cla97C10G201140Watermelon (97103) v2carwmbB0254
Carg03614Bhi11G002039Wax gourdcarwgoB0321
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03614Carg16226Silver-seed gourdcarcarB291
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03614Silver-seed gourdcarcarB289
Carg03614Silver-seed gourdcarcarB294
Carg03614Cucumber (Gy14) v2carcgybB0263
Carg03614Cucurbita maxima (Rimu)carcmaB0345
Carg03614Cucurbita maxima (Rimu)carcmaB0347
Carg03614Cucurbita moschata (Rifu)carcmoB0348
Carg03614Cucurbita pepo (Zucchini)carcpeB0350
Carg03614Bottle gourd (USVL1VR-Ls)carlsiB222
Carg03614Watermelon (Charleston Gray)carwcgB0241
Carg03614Watermelon (97103) v1carwmB0237
Carg03614Watermelon (97103) v1carwmB0239
Carg03614Watermelon (97103) v2carwmbB0255
Carg03614Wax gourdcarwgoB0328