Cp4.1LG03g00250 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g00250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG03 : 1751508 .. 1752261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTGATACAACCTTCTCGAAACGACGTCGTTCGGTTTGCTACACCGTTCGCGAGCTTTTTGATTCGGAGTCTTGGCGGTGGAAGCGGCTTGAGGATTTAGTTCATGACAATAGCTTAAGCTTTGTCGAGCCGTTTTGTGTGGCTGTGGTCGTTGGTGGGTTAGCTCATTGGCAATTCTTTGACGAGAAGTCTATACTTGCGTTCGACTTCCTCTCCGAAACATGGTCGAGTTTCGCCGCGCCGGAGGCTATAACGGTGGAGCAGGAGGCTAGGGAAAGAACCGAGCCGTTCAAGAGCTGGCACACGAAGCTTGTGGAGTACAAAGGGAAGTTGGGGCTAATACGTGAGTTTAGGGAACCGGCGGCGGCGCGGAATGAGCTGTGGGTAATGGAAGATTACAAGGAAAGGGTTTGGACCAAAAAGTGGGAATTTTTGGAGTCGAATCCAACGGCTGTGTATGGATCAGATACTTTGATGGCGATGGAAAATAATGAAAAAGTGAAGTTTTGTAATGTGGAGACAGGTAATTACAGTTACCGACAGTTGGAACGAACCCATTATTACGGTTCTGTGCTTAAGGTTTTTCCTTTCACGTCGGATTTTCAGCCGTGGGATTATTACCCTCCGCCGCCACGTTCATCCAACCCTCCAATTGTCGCTAAATTGCTTCGCCCGAGTCCTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTTTGTAA

mRNA sequence

ATGCCCTTAAGCTTTGTCGAGCCGTTTTGTGTGGCTGTGGTCGTTGGTGGGTTAGCTCATTGGCAATTCTTTGACGAGAAGTCTATACTTGCGTTCGACTTCCTCTCCGAAACATGGTCGAGTTTCGCCGCGCCGGAGGCTATAACGGTGGAGCAGGAGGCTAGGGAAAGAACCGAGCCGTTCAAGAGCTGGCACACGAAGCTTGTGGAGTACAAAGGGAAGTTGGGGCTAATACGTGAGTTTAGGGAACCGGCGGCGGCGCGGAATGAGCTGTGGGTAATGGAAGATTACAAGGAAAGGGTTTGGACCAAAAAGTGGGAATTTTTGGAGTCGAATCCAACGGCTGTGTATGGATCAGATACTTTGATGGCGATGGAAAATAATGAAAAAGTGAAGTTTTGTAATGTGGAGACAGGTTTGTAA

Coding sequence (CDS)

ATGCCCTTAAGCTTTGTCGAGCCGTTTTGTGTGGCTGTGGTCGTTGGTGGGTTAGCTCATTGGCAATTCTTTGACGAGAAGTCTATACTTGCGTTCGACTTCCTCTCCGAAACATGGTCGAGTTTCGCCGCGCCGGAGGCTATAACGGTGGAGCAGGAGGCTAGGGAAAGAACCGAGCCGTTCAAGAGCTGGCACACGAAGCTTGTGGAGTACAAAGGGAAGTTGGGGCTAATACGTGAGTTTAGGGAACCGGCGGCGGCGCGGAATGAGCTGTGGGTAATGGAAGATTACAAGGAAAGGGTTTGGACCAAAAAGTGGGAATTTTTGGAGTCGAATCCAACGGCTGTGTATGGATCAGATACTTTGATGGCGATGGAAAATAATGAAAAAGTGAAGTTTTGTAATGTGGAGACAGGTTTGTAA

Protein sequence

MPLSFVEPFCVAVVVGGLAHWQFFDEKSILAFDFLSETWSSFAAPEAITVEQEARERTEPFKSWHTKLVEYKGKLGLIREFREPAAARNELWVMEDYKERVWTKKWEFLESNPTAVYGSDTLMAMENNEKVKFCNVETGL

Homology

[Close]

BLAST of Cp4.1LG03g00250 vs. TrEMBL
Match: A0A0A0LBP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785420 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-21
Identity = 65/144 (45.14%), Postives = 81/144 (56.25%), Query Frame = 1


Query: 5   FVEPFCVAVVVGGLAHWQFFDEKSILAFDFLSETWSSFAAPEAITVEQEARERTEPF--- 64
           FV+     V   GLAHW+F    +I AFDF S+TWS  A PE I V  E   R       
Sbjct: 207 FVDSNRAPVFANGLAHWKFTGNTTIFAFDFYSDTWSKIAMPETI-VNDENNSRVNAISVN 266

Query: 65  --KSWHTKLVEYKGKLGLIREFREPAA--ARNELWVMEDYKERVWTKKWEFLESNPTAVY 124
             + W T+LVEY+GKLG++REF +P A  A  ELWVM    ++ W KK EF    PT +Y
Sbjct: 267 SVREWRTELVEYEGKLGVLREFHQPFAPTALTELWVMH---KKFWMKKLEFSRLMPTTLY 326

Query: 125 GSDTLMAMENN--EKVKFCNVETG 140
           GSD L+   ++   KVKF N  TG
Sbjct: 327 GSDILVTWLSDYPSKVKFSNEVTG 346

[Close]

BLAST of Cp4.1LG03g00250 vs. NCBI nr
Match: gi|659085782|ref|XP_008443600.1| (PREDICTED: uncharacterized protein LOC103487156 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 65/138 (47.10%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 5   FVEPFCVAVVVGGLAHWQFFDEKSILAFDFLSETWSSFAAPEAITVEQEARERTEPFKSW 64
           +V+     V   GLAHW+F D+ SI AFDF SETWS  A PE I V  +    +  F+ W
Sbjct: 208 YVDSQRAPVFAYGLAHWKFRDDTSIFAFDFYSETWSKIAMPETI-VNDKNNSSSSHFQRW 267

Query: 65  HTKLVEYKGKLGLIREFREPAAARNELWVMEDY-KERVWTKKWEFLESNPTAVYGSDTLM 124
           H +LVEY+GKLG++REF +P     ELWVME+Y K+++W KK +   S PT  YGSD  M
Sbjct: 268 HIELVEYEGKLGVVREFHKPTVF-TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQM 327

Query: 125 AM--ENNEKVKFCNVETG 140
               +++  V F N+ETG
Sbjct: 328 MWLHDDSSNVMFSNIETG 343

[Close]

BLAST of Cp4.1LG03g00250 vs. NCBI nr
Match: gi|449437890|ref|XP_004136723.1| (PREDICTED: F-box protein At5g49610 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 65/144 (45.14%), Postives = 81/144 (56.25%), Query Frame = 1


Query: 5   FVEPFCVAVVVGGLAHWQFFDEKSILAFDFLSETWSSFAAPEAITVEQEARERTEPF--- 64
           FV+     V   GLAHW+F    +I AFDF S+TWS  A PE I V  E   R       
Sbjct: 207 FVDSNRAPVFANGLAHWKFTGNTTIFAFDFYSDTWSKIAMPETI-VNDENNSRVNAISVN 266

Query: 65  --KSWHTKLVEYKGKLGLIREFREPAA--ARNELWVMEDYKERVWTKKWEFLESNPTAVY 124
             + W T+LVEY+GKLG++REF +P A  A  ELWVM    ++ W KK EF    PT +Y
Sbjct: 267 SVREWRTELVEYEGKLGVLREFHQPFAPTALTELWVMH---KKFWMKKLEFSRLMPTTLY 326

Query: 125 GSDTLMAMENN--EKVKFCNVETG 140
           GSD L+   ++   KVKF N  TG
Sbjct: 327 GSDILVTWLSDYPSKVKFSNEVTG 346

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g00250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g00250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBP1_CUCSA	2.8e-21	45.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785420 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g00250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g00250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085782\|ref\|XP_008443600.1\|	1.0e-24	47.10	PREDICTED: uncharacterized protein LOC103487156 [Cucumis melo]	[more]
gi\|449437890\|ref\|XP_004136723.1\|	4.0e-21	45.14	PREDICTED: F-box protein At5g49610 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013187	F-box-assoc_dom_typ3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g00250.1	Cp4.1LG03g00250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013187	F-box associated domain, type 3	PFAM	PF08268	FBA_3	coord: 19..128 score: 2.0
None	No IPR available	PANTHER	PTHR32133	FAMILY NOT NAMED	coord: 12..106 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g00250	Cucsa.242230	Cucumber (Gy14) v1	cgycpeB0644
Cp4.1LG03g00250	CmoCh14G003840	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g00250	Cla017589	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g00250	Csa3G785420	Cucumber (Chinese Long) v2	cpecuB597
Cp4.1LG03g00250	MELO3C009576	Melon (DHL92) v3.5.1	cpemeB571
Cp4.1LG03g00250	ClCG10G017950	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g00250	CSPI03G35980	Wild cucumber (PI 183967)	cpecpiB599
Cp4.1LG03g00250	Lsi03G017840	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g00250	MELO3C009576.2	Melon (DHL92) v3.6.1	cpemedB678
Cp4.1LG03g00250	CsaV3_3G038340	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g00250	Bhi11G002066	Wax gourd	cpewgoB0745
Cp4.1LG03g00250	Carg03602	Silver-seed gourd	carcpeB0353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g00250	Silver-seed gourd	carcpeB0956
Cp4.1LG03g00250	Cucurbita pepo (Zucchini)	cpecpeB487
Cp4.1LG03g00250	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g00250	Cucurbita maxima (Rimu)	cmacpeB830
Cp4.1LG03g00250	Cucurbita moschata (Rifu)	cmocpeB783
Cp4.1LG03g00250	Cucumber (Gy14) v2	cgybcpeB395