Cp4.1LG02g13720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g13720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPeptidyl-tRNA hydrolase family protein
LocationCp4.1LG02 : 12290385 .. 12294204 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATTTTATTTATTTATTTATTTTTAATTACCCATTCAGAAACGCCCTCCTTCCCGAATGCTTCCCAGCTGAATTTCCAGAATAGCCTCCGGAACAATACGATAGGGTGTCTTCTTCTTCTACGCCATTAACAGCGTCCACAGCTGCTTCTGTTCGCCCAAATCAACTCCTCTTTCAACCAAACCATCCAATTTACACGCAGGTTCAGTTTTTTATCTTCTTCGATTTCCTAAAATTTGCTTCGCTTCGCCCCGAGAAATTCAATGAAATAACACGATTCTGTATGGGTTTTCTAAATTTTGTTTTAGGTTTCAATGTTATATGCAGCATCGGTCCCAAGTGTTTGCTTATTTTCCAATTCGAGCATTGCCCATTTCCCTTCTAGATTCCCAAAGCGTCTGGTTCCGACGAGGCTTTCTGTACGAGCTTCATTGCCAGATAATGATAATGGCGTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGGAATAAGTACCATGGGACTCGGCACAATGTAATCATACATTCTTTAAGTCATTGTACTGAACTTTTAGAGTGATTTTGGAATGGAATTTGATAGTAGTAGCTCCCAATTAAGCATATTTTTCTAGCACTTTTGGTAGGAAGCCTTACTAGAGTGTTCTTCAAAATTTTCGAAATGAATTTTGGTTATTAGTATTGTCTAGTAGTAGTTTTGTCATTCTAAAAAGTCTTACCAAACTCTCACTCTTAATGTGCAATGGCACTTAGTGACTCTTGGGGTTGTCCTGCTTAGGTTGGTTTCGAAATGATCGATAGCATTGCTCAGGCGCAGGGCATTTTGATGAACACAATACAATCCAAAGCCTTGATTGGAATAGGTTGGCCTTTGTTCTTCCTTTTTTGTTATTGAATTGGATTTCCATATACTGGTAGATTTGAAGTTCGTTGAGTTTTCTTGAATGATCAGTGCAGGTTCAATTGGAGAAGTACCAATTCTGTTGGCAAAGCCTCAGACTTACATGAATTTCTGTGGAGAATCGGTTTGTCTACTCGTCTCTTTATTTTTCTTTTGTTCAATACACATGCCATATAGGATAGAGTAGACTGTTGGTTTGTTTATTTCCCTAGTTTAAGGATGAAAACTTAGTTTGAAGCAGAGGATATGATGTTCATTGAGGTTCTTGAATGATCCTAAATTCCTATGGATATTTCTTCTGTGTTCCTTCGAAAAAACGACACAGTATCTATGCTGCAGTTAGAGAGAAACACAAAGTTAACCGACAGTAGGATTTCATAGTGATGATGTTGGGAGATCCCACATCGGTTGGAGAAGGGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGGACGCGTTTTAAAACCTTGAAGGGAAAGTCCAACGAGGACAATATCTGCTAGTGGTGGGCTTGGGGCCGTTACAAACGGTATCAAAGCCAGACACCGGGTAGTGTGCTAGCGAGGACGCTGAGTCTCCAATGGGGTAGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAGCATTCCTTGTAAGGGTGTGAAAACCTCTCCCTAATAGACGCGTTTTAAAATCTTGAGGGGAAGTCCTTGAAGGGAAAACCCAAATTCATATCGGCCTAGCGGTGGACTGGGCCGTTACAGGTGTCCTGGAGATACTTCGATTTTTCATTTTTCTAATTACCCGTTTATTGCCCTAGAGATGTGTATTTGCCGTTAGATCATGCTATAATATTGTAGAATTAGAAATCATCTTGTTCACTGGCTAACTCTATCTTTTAGCTCATGAGTGTCCTATGAACCCTGCATATCGATGATCCCTTCTTATGTTTCTAAGTGTTAATGTGCCAATTATATATCTTTATGAATCTTTCATTCATTAGTTGAATCATTTTTTTCATAATATTGAGACAGTTATCTCTTCACCTCACTTTCTGTTTAAATTTGTATAGGTTGGACCTCTTGCTGTACATTATCAAATACCTTTACGTCACATCTTGTTGGTATAAGTTTCAATATCTCTTTGCAATCCTCATTTGTTAGCGTACAAAATGATTAGATTGTAATGGAAGTATCTGTACACACTTACTATTGTAGGTTTATGATGAAATGAGCTTGCCAAATGGCGTTCTTAGGCTCCAGCCAAAGGGAGGCCACGGCCATCATAATGGGTATATCGATGAAATATTAGTTTAGATTTCACCTTTTTCTTTCTTTTTTTCTTTCTAGTTTTAATTCATACTTGCTTTCAATTTTTCCAATCTTGACATGGTTAGGTTATGTTTTTTAGAGTGTTTTATGACTGAAAAGACTCCCTATTAAAAATCATCATGTTTGGAAAACATAAAATTAGAAGTATGTTTGGAAAAAGTCGAAGAGTATTTGAAGTGCTTCATAAGAAAGTACTCCTTGAAGACTATCATGTGTTGGCCCAGTGGTAGAGCCATGAGAATAGTAAAGAAATTAGAGGGAGGGAGGAGAACGAAGCATTCTTCTTCTTTATTAGAGTGTGGAAACCTCCCCCTAGCAAACTCCCTTCAAGAGAAAGCTCAAAGAGTGCAATATCTGCTAGTGGTGGACTTAGGCTATTACAAATGGTATTAGAGCTAGACACCGGGTGATGTACCAGCAAGGAGACTGAGCTCCAAAGGGGGTGTGCCAGCGAGGACGATAGACCTCGAAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAAACATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTATAAAAACTATGAGGGGAAGCCCAAAAAGGACAATGTCAACAAGCGGTAGGCTTGGGTCGTTACAGAATGAGTTCAATCTGTGATGGCCACCTTAACCTAGGATCAAACACTGCATGTTTCTCATCCAATACCTCACTTCTTCCCATTGAATACTCGATGCTCGTGTTTCATATTCGTAATTTTTAGTTAGGAGGATGACGCATGCATTTTTCTTCTCGTATTTGTCATTTAACTTGGTAGGCTTTCATTATTGTAGAGAAATTTATGGCAGCATATGCATAAAAAGCTGTTATTGATTTCTCTAGTTACACAGGGTGAAGAGTGTAATGGGACATCTGGATGGCCGACGTGAGTTTCCTCGGTTATGCATCGGTACGTATTTTTGTTAACATCAGTTCGAAGACGTTCGTTAAGTTTCTACTTCAGTAAGTGTAAAAAAAACTACATTGCTCATGTTTTTATCTAGGAATTGGGAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGGTGAGTAGTCGTCGCCTTCGTACCTCGGATAGTACTTTTTCCCCCTTTTTCAAATTCGGTTTTCATATCATCATATTTAAAATAAACGAATCGAACTACCCAAACAGATTGATGCAGCACTAGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAAAGGATTCAGCAAAGGAGTCGACAGATTCAACTTGACCCAGAAATACAAGTATCACAAGGTTTGATCCTATTGATCATATGTAATAAGCTGATAGAATGATTGACTGTTCATCGATGTAGACGAGAAAATCAGAAATGAAATAGACAAAATGAAGGTTGGGGGTATTGATGATCTTATGAATATGAAATCTTTAGATGATTCAAATGACAAACAAAATGCATCGAAAGCTTGCTTGCATCGACTGTGAAAATTTGAACCTATAATATTAAGAATAAGGTATATTATCTTAACCTACATATGACTTATATATTA

mRNA sequence

GTTTATTTTATTTATTTATTTATTTTTAATTACCCATTCAGAAACGCCCTCCTTCCCGAATGCTTCCCAGCTGAATTTCCAGAATAGCCTCCGGAACAATACGATAGGGTGTCTTCTTCTTCTACGCCATTAACAGCGTCCACAGCTGCTTCTGTTCGCCCAAATCAACTCCTCTTTCAACCAAACCATCCAATTTACACGCAGGTTTCAATGTTATATGCAGCATCGGTCCCAAGTGTTTGCTTATTTTCCAATTCGAGCATTGCCCATTTCCCTTCTAGATTCCCAAAGCGTCTGGTTCCGACGAGGCTTTCTGTACGAGCTTCATTGCCAGATAATGATAATGGCGTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGGAATAAGTACCATGGGACTCGGCACAATGTTGGTTTCGAAATGATCGATAGCATTGCTCAGGCGCAGGGCATTTTGATGAACACAATACAATCCAAAGCCTTGATTGGAATAGGTTCAATTGGAGAAGTACCAATTCTGTTGGCAAAGCCTCAGACTTACATGAATTTCTGTGGAGAATCGGTTGGACCTCTTGCTGTACATTATCAAATACCTTTACGTCACATCTTGTTGGTTTATGATGAAATGAGCTTGCCAAATGGCGTTCTTAGGCTCCAGCCAAAGGGAGGCCACGGCCATCATAATGGGGTGAAGAGTGTAATGGGACATCTGGATGGCCGACGTGAGTTTCCTCGGTTATGCATCGGAATTGGGAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGATTGATGCAGCACTAGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAAAGGATTCAGCAAAGGAGTCGACAGATTCAACTTGACCCAGAAATACAAGTATCACAAGGTTTGATCCTATTGATCATATGTAATAAGCTGATAGAATGATTGACTGTTCATCGATGTAGACGAGAAAATCAGAAATGAAATAGACAAAATGAAGGTTGGGGGTATTGATGATCTTATGAATATGAAATCTTTAGATGATTCAAATGACAAACAAAATGCATCGAAAGCTTGCTTGCATCGACTGTGAAAATTTGAACCTATAATATTAAGAATAAGGTATATTATCTTAACCTACATATGACTTATATATTA

Coding sequence (CDS)

ATGTTATATGCAGCATCGGTCCCAAGTGTTTGCTTATTTTCCAATTCGAGCATTGCCCATTTCCCTTCTAGATTCCCAAAGCGTCTGGTTCCGACGAGGCTTTCTGTACGAGCTTCATTGCCAGATAATGATAATGGCGTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGGAATAAGTACCATGGGACTCGGCACAATGTTGGTTTCGAAATGATCGATAGCATTGCTCAGGCGCAGGGCATTTTGATGAACACAATACAATCCAAAGCCTTGATTGGAATAGGTTCAATTGGAGAAGTACCAATTCTGTTGGCAAAGCCTCAGACTTACATGAATTTCTGTGGAGAATCGGTTGGACCTCTTGCTGTACATTATCAAATACCTTTACGTCACATCTTGTTGGTTTATGATGAAATGAGCTTGCCAAATGGCGTTCTTAGGCTCCAGCCAAAGGGAGGCCACGGCCATCATAATGGGGTGAAGAGTGTAATGGGACATCTGGATGGCCGACGTGAGTTTCCTCGGTTATGCATCGGAATTGGGAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGATTGATGCAGCACTAGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAAAGGATTCAGCAAAGGAGTCGACAGATTCAACTTGACCCAGAAATACAAGTATCACAAGGTTTGA

Protein sequence

MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV
Homology
[Close]
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-96
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 1 

Query: 10  VCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHGT 69
           +C     S+ HF ++ P           ++    D+  KVEYTPWLIVGLGNPGNKYHGT
Sbjct: 2   LCPTYTPSVYHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGT 61

Query: 70  RHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAV 129
           RHNVGFEMID +A+ +G+LMNTIQSKALIGIG+I +VPILLAKPQTYMNF GESVG LA 
Sbjct: 62  RHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLAS 121

Query: 130 HYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNP 189
           HY++PLRHIL++YDEM+LPNGVLRLQPKGG G+HNGVKSVMGHLDGRR FPRL IGIG P
Sbjct: 122 HYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKP 181

Query: 190 PGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
           PG MDMKAFLLQKFS +E+KQI+ ALEQG EAV+TL L GF++G+ RFNL QKYK+HKV
Sbjct: 182 PGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

[Close]
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-92
Identity = 169/257 (65.76%), Postives = 203/257 (78.99%), Query Frame = 1 

Query: 2   LYAASVPSVCLFSNSSIAHFPS-RFPKRLV---------PTRLSVRASLPDNDNGVKVEY 61
           L AA++PS    S+ S    PS R P++ +         P   +V +S+PD   G  VEY
Sbjct: 3   LLAAAIPSTS--SHFSAPFLPSFRMPRKSLTAPLHRIRRPRPFTVVSSVPDPAAG-PVEY 62

Query: 62  TPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLA 121
           TPWLI GLGNPGNKY+GTRHNVGFEM+D IA  +GI MNTIQSK+L+GIGSIGEVP+L+ 
Sbjct: 63  TPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 122

Query: 122 KPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMG 181
           KPQ+YMN+ GE++GPLA +YQ+PLRHILL+YD+ SLPNGVLRLQ KGGHG HNG+++V+ 
Sbjct: 123 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 182

Query: 182 HLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFS 241
           HLDGRREFPRL IGIG+PPG MD +AFLLQKFSS ER QID ALEQGV+AVRTL LKGFS
Sbjct: 183 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 242

Query: 242 KGVDRFNLTQKYKYHKV 249
              +RFNL QKYK+H+V
Sbjct: 243 GSTERFNLVQKYKFHRV 256

[Close]
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-90
Identity = 160/215 (74.42%), Postives = 182/215 (84.65%), Query Frame = 1 

Query: 35  SVRASLPDNDNGV-KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQ 94
           S+RASLP +DN + K EYTPWLIVGLGNPG KY+GTRHN+GFEMID IA+A  I MNTIQ
Sbjct: 32  SLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQ 91

Query: 95  SKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLR 154
           SKAL+GIGS+GEVPILL KPQ YMNF GESVGPLA +YQIPLRHIL++YD+M L NGVLR
Sbjct: 92  SKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLR 151

Query: 155 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 214
           LQPKGGH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFLLQKFS +ERKQ+D 
Sbjct: 152 LQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDE 211

Query: 215 ALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
            LEQGVE V+TL  +GFS  + RFNL QKYK+HKV
Sbjct: 212 GLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

[Close]
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 6.1e-89
Identity = 155/216 (71.76%), Postives = 183/216 (84.72%), Query Frame = 1 

Query: 33  RLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTI 92
           R++V AS+PD       EYTPWLI GLGNPG+KYHGTRHNVGFEM+D IA+ +GI MNTI
Sbjct: 45  RIAVVASVPD-PAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTI 104

Query: 93  QSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVL 152
           QSK+L+GIGSIGEVP+LL KPQ+Y+N+ GE++GPLA +YQ+PLRHIL++YDEMSLPNGVL
Sbjct: 105 QSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVL 164

Query: 153 RLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQID 212
           RLQ KGGHG HNG+++VM  LD  RE PRL IGIG+PPG MD +AFLLQKFSS ER QID
Sbjct: 165 RLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQID 224

Query: 213 AALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
            ALEQGV+AVRTL LKGFS  ++RFNL QKYK+H V
Sbjct: 225 TALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

[Close]
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 116/197 (58.88%), Postives = 149/197 (75.63%), Query Frame = 1 

Query: 51  YTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILL 110
           + PWL +GLGNPG+KY GTRHN+GFEMID  A++ GI MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 111 AKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVM 170
           AKPQTYMN  GES GPLA +Y++PL  +L+V+D+M LP GVLRLQ KGGHG HNG+KSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 171 GHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGF 230
            H  G REF RL IGIG PPG MD KAFLLQKFS   R+++D AL +GV+A++ +  K F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 231 SKGVDRFNLTQKYKYHK 248
            +    FN+ QKYK+ K
Sbjct: 196 GESWRLFNVEQKYKHLK 212

[Close]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match: A0A0A0LCC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G257600 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 2.6e-123
Identity = 223/249 (89.56%), Postives = 231/249 (92.77%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDND-NGVKVEYTPWLIVGL 60
           ML+AAS  SV LFSNSS AHF     K LV TRLSVRAS PD+D NG+KVEYTPWLIVGL
Sbjct: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLA HYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 TQKYKYHKV 249
           +QKYKYHKV
Sbjct: 241 SQKYKYHKV 249

[Close]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match: B9H311_POPTR (Peptidyl-tRNA hydrolase family protein OS=Populus trichocarpa GN=POPTR_0004s09730g PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.9e-110
Identity = 200/249 (80.32%), Postives = 214/249 (85.94%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKR-LVPTRLSVRASLPDNDNGVKVEYTPWLIVGL 60
           MLYA S P  C+    S     SRF +R LV  RL VRASLPDN NGVKVEYTPWLIVGL
Sbjct: 1   MLYAVSTPRTCISCPRS-----SRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPG KYHGTRHNVGFEMID IAQA+G+LMNTIQSKALIGIG IGEVPILLAKPQ YMNF
Sbjct: 61  GNPGTKYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNF 120

Query: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180
            GESVGPLA HY+IPLRHILL+YDEM+LPNG+LR+QPKGGHGHHNGVKSVM HLDG REF
Sbjct: 121 SGESVGPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFS  ER+QIDA+LEQGVEA+RTL L GF+  + RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNL 240

Query: 241 TQKYKYHKV 249
            QKYKYHKV
Sbjct: 241 GQKYKYHKV 244

[Close]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match: A0A061EH51_THECC (Peptidyl-tRNA hydrolase family protein isoform 1 OS=Theobroma cacao GN=TCM_019422 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 9.7e-110
Identity = 198/248 (79.84%), Postives = 215/248 (86.69%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLG 60
           ML+A SVP+ C+    S   F  R       TRL VRASLPDN++G KVEYTPWLIVGLG
Sbjct: 1   MLHAISVPNTCIPYPRSRC-FSQR---NRGSTRLCVRASLPDNNDGFKVEYTPWLIVGLG 60

Query: 61  NPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFC 120
           NPGNKYHGTRHNVGFEMID I+Q +GI +NTIQSKALIG+G+IGEVPILLAKPQ YMNFC
Sbjct: 61  NPGNKYHGTRHNVGFEMIDQISQVEGIALNTIQSKALIGLGAIGEVPILLAKPQAYMNFC 120

Query: 121 GESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFP 180
           GESVGPLA +YQ+PLRHILL+YDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDG REFP
Sbjct: 121 GESVGPLAAYYQVPLRHILLIYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGCREFP 180

Query: 181 RLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLT 240
           RLCIGIGNPPG+MDMKA+LLQKFSSVER QIDAALEQGVEAVRT+ L GFS  + RFNL 
Sbjct: 181 RLCIGIGNPPGSMDMKAYLLQKFSSVERNQIDAALEQGVEAVRTIVLNGFSHKITRFNLG 240

Query: 241 QKYKYHKV 249
           QKYKYHKV
Sbjct: 241 QKYKYHKV 244

[Close]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match: A0A061EHT4_THECC (Peptidyl-tRNA hydrolase family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_019422 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.1e-108
Identity = 188/217 (86.64%), Postives = 202/217 (93.09%), Query Frame = 1 

Query: 32  TRLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNT 91
           TRL VRASLPDN++G KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMID I+Q +GI +NT
Sbjct: 6   TRLCVRASLPDNNDGFKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDQISQVEGIALNT 65

Query: 92  IQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGV 151
           IQSKALIG+G+IGEVPILLAKPQ YMNFCGESVGPLA +YQ+PLRHILL+YDEMSLPNGV
Sbjct: 66  IQSKALIGLGAIGEVPILLAKPQAYMNFCGESVGPLAAYYQVPLRHILLIYDEMSLPNGV 125

Query: 152 LRLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQI 211
           LRLQPKGGHGHHNGVKSVMGHLDG REFPRLCIGIGNPPG+MDMKA+LLQKFSSVER QI
Sbjct: 126 LRLQPKGGHGHHNGVKSVMGHLDGCREFPRLCIGIGNPPGSMDMKAYLLQKFSSVERNQI 185

Query: 212 DAALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
           DAALEQGVEAVRT+ L GFS  + RFNL QKYKYHKV
Sbjct: 186 DAALEQGVEAVRTIVLNGFSHKITRFNLGQKYKYHKV 222

[Close]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match: A0A068U3A3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040260001 PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.4e-108
Identity = 195/248 (78.63%), Postives = 215/248 (86.69%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLG 60
           ML+A S P  C  +N S    P    + L PTRL V ASLP++ +GVKVEYTPWLIVGLG
Sbjct: 1   MLHAISAPKTC--ANISYPRRPCFHLRHLAPTRLRVSASLPES-HGVKVEYTPWLIVGLG 60

Query: 61  NPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFC 120
           NPGNKYHGTRHNVGFEMID I+QA+GI+MNTIQSKAL+GIGSIGEVP+LLAKPQ YMN+ 
Sbjct: 61  NPGNKYHGTRHNVGFEMIDCISQAEGIVMNTIQSKALVGIGSIGEVPVLLAKPQAYMNYS 120

Query: 121 GESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFP 180
           GESVGPLA +Y++PLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVM HLDGRREFP
Sbjct: 121 GESVGPLAAYYRVPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMEHLDGRREFP 180

Query: 181 RLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLT 240
           R CIGIGNPPGTMDMKAFLLQKFS+VER+QIDAALEQGVEAVR L  +GF+  + RFNL 
Sbjct: 181 RFCIGIGNPPGTMDMKAFLLQKFSTVEREQIDAALEQGVEAVRALIQEGFNSRITRFNLG 240

Query: 241 QKYKYHKV 249
           QKYKYHKV
Sbjct: 241 QKYKYHKV 245

[Close]
BLAST of Cp4.1LG02g13720 vs. TAIR10
Match: AT5G16140.1 (AT5G16140.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 354.4 bits (908), Expect = 5.8e-98
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 1 

Query: 10  VCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHGT 69
           +C     S+ HF ++ P           ++    D+  KVEYTPWLIVGLGNPGNKYHGT
Sbjct: 2   LCPTYTPSVYHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGT 61

Query: 70  RHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAV 129
           RHNVGFEMID +A+ +G+LMNTIQSKALIGIG+I +VPILLAKPQTYMNF GESVG LA 
Sbjct: 62  RHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLAS 121

Query: 130 HYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNP 189
           HY++PLRHIL++YDEM+LPNGVLRLQPKGG G+HNGVKSVMGHLDGRR FPRL IGIG P
Sbjct: 122 HYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKP 181

Query: 190 PGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
           PG MDMKAFLLQKFS +E+KQI+ ALEQG EAV+TL L GF++G+ RFNL QKYK+HKV
Sbjct: 182 PGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

[Close]
BLAST of Cp4.1LG02g13720 vs. TAIR10
Match: AT5G38290.2 (AT5G38290.2 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 334.0 bits (855), Expect = 8.1e-92
Identity = 160/215 (74.42%), Postives = 182/215 (84.65%), Query Frame = 1 

Query: 35  SVRASLPDNDNGV-KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQ 94
           S+RASLP +DN + K EYTPWLIVGLGNPG KY+GTRHN+GFEMID IA+A  I MNTIQ
Sbjct: 36  SLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQ 95

Query: 95  SKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLR 154
           SKAL+GIGS+GEVPILL KPQ YMNF GESVGPLA +YQIPLRHIL++YD+M L NGVLR
Sbjct: 96  SKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLR 155

Query: 155 LQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDA 214
           LQPKGGH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFLLQKFS +ERKQ+D 
Sbjct: 156 LQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDE 215

Query: 215 ALEQGVEAVRTLALKGFSKGVDRFNLTQKYKYHKV 249
            LEQGVE V+TL  +GFS  + RFNL QKYK+HKV
Sbjct: 216 GLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250

[Close]
BLAST of Cp4.1LG02g13720 vs. TAIR10
Match: AT5G19830.1 (AT5G19830.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 251.1 bits (640), Expect = 6.9e-67
Identity = 116/197 (58.88%), Postives = 149/197 (75.63%), Query Frame = 1 

Query: 51  YTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILL 110
           + PWL +GLGNPG+KY GTRHN+GFEMID  A++ GI MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 111 AKPQTYMNFCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVM 170
           AKPQTYMN  GES GPLA +Y++PL  +L+V+D+M LP GVLRLQ KGGHG HNG+KSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 171 GHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGF 230
            H  G REF RL IGIG PPG MD KAFLLQKFS   R+++D AL +GV+A++ +  K F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 231 SKGVDRFNLTQKYKYHK 248
            +    FN+ QKYK+ K
Sbjct: 196 GESWRLFNVEQKYKHLK 212

[Close]
BLAST of Cp4.1LG02g13720 vs. TAIR10
Match: AT1G18440.1 (AT1G18440.1 Peptidyl-tRNA hydrolase family protein)

HSP 1 Score: 241.1 bits (614), Expect = 7.2e-64
Identity = 118/230 (51.30%), Postives = 155/230 (67.39%), Query Frame = 1 

Query: 9   SVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLGNPGNKYHG 68
           S CL S+S    F S        + L    +LP +         PWLIVGLGNPG KY G
Sbjct: 52  SQCLSSSSQSLSFSSNSFSSQPESELL--QALPSSKPKSPPLQLPWLIVGLGNPGKKYQG 111

Query: 69  TRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLA 128
           TRHNVGFEM+D++A A+GI MNT+  KAL G G IG +PI+LAKPQT+MN  GESVG + 
Sbjct: 112 TRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIV 171

Query: 129 VHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFPRLCIGIGN 188
             Y+IPL+ +L+VYD++ LP G LRL PKGGHG HNG++S++  L G R+FPRL IGIG 
Sbjct: 172 SFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGR 231

Query: 189 PPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFN 239
           PPG MD   F+L++F+  E++++D   + G+EA+R L L+GF+K     N
Sbjct: 232 PPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVN 279

[Close]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match: gi|659123230|ref|XP_008461557.1| (PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis melo])

HSP 1 Score: 459.5 bits (1181), Expect = 3.6e-126
Identity = 229/250 (91.60%), Postives = 234/250 (93.60%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDND--NGVKVEYTPWLIVG 60
           MLYAAS  SV LFSNSS AH+ S   K LV TRLSVRASLPD+D  NGVKVEYTPWLIVG
Sbjct: 1   MLYAASFQSVSLFSNSSTAHYHSPSTKPLVSTRLSVRASLPDSDNNNGVKVEYTPWLIVG 60

Query: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120
           LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN
Sbjct: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120

Query: 121 FCGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRRE 180
           FCGESVGPLA HYQIPLRHILL YDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRRE
Sbjct: 121 FCGESVGPLAAHYQIPLRHILLTYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRRE 180

Query: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFN 240
           FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFN
Sbjct: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN 240

Query: 241 LTQKYKYHKV 249
           L+QKYKYHKV
Sbjct: 241 LSQKYKYHKV 250

[Close]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match: gi|449455782|ref|XP_004145630.1| (PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis sativus])

HSP 1 Score: 449.5 bits (1155), Expect = 3.8e-123
Identity = 223/249 (89.56%), Postives = 231/249 (92.77%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDND-NGVKVEYTPWLIVGL 60
           ML+AAS  SV LFSNSS AHF     K LV TRLSVRAS PD+D NG+KVEYTPWLIVGL
Sbjct: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLA HYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 TQKYKYHKV 249
           +QKYKYHKV
Sbjct: 241 SQKYKYHKV 249

[Close]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match: gi|224079329|ref|XP_002305823.1| (peptidyl-tRNA hydrolase family protein [Populus trichocarpa])

HSP 1 Score: 406.8 bits (1044), Expect = 2.8e-110
Identity = 200/249 (80.32%), Postives = 214/249 (85.94%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKR-LVPTRLSVRASLPDNDNGVKVEYTPWLIVGL 60
           MLYA S P  C+    S     SRF +R LV  RL VRASLPDN NGVKVEYTPWLIVGL
Sbjct: 1   MLYAVSTPRTCISCPRS-----SRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPG KYHGTRHNVGFEMID IAQA+G+LMNTIQSKALIGIG IGEVPILLAKPQ YMNF
Sbjct: 61  GNPGTKYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNF 120

Query: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180
            GESVGPLA HY+IPLRHILL+YDEM+LPNG+LR+QPKGGHGHHNGVKSVM HLDG REF
Sbjct: 121 SGESVGPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFS  ER+QIDA+LEQGVEA+RTL L GF+  + RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNL 240

Query: 241 TQKYKYHKV 249
            QKYKYHKV
Sbjct: 241 GQKYKYHKV 244

[Close]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match: gi|590652761|ref|XP_007033235.1| (Peptidyl-tRNA hydrolase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 198/248 (79.84%), Postives = 215/248 (86.69%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDNDNGVKVEYTPWLIVGLG 60
           ML+A SVP+ C+    S   F  R       TRL VRASLPDN++G KVEYTPWLIVGLG
Sbjct: 1   MLHAISVPNTCIPYPRSRC-FSQR---NRGSTRLCVRASLPDNNDGFKVEYTPWLIVGLG 60

Query: 61  NPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFC 120
           NPGNKYHGTRHNVGFEMID I+Q +GI +NTIQSKALIG+G+IGEVPILLAKPQ YMNFC
Sbjct: 61  NPGNKYHGTRHNVGFEMIDQISQVEGIALNTIQSKALIGLGAIGEVPILLAKPQAYMNFC 120

Query: 121 GESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREFP 180
           GESVGPLA +YQ+PLRHILL+YDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDG REFP
Sbjct: 121 GESVGPLAAYYQVPLRHILLIYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGCREFP 180

Query: 181 RLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNLT 240
           RLCIGIGNPPG+MDMKA+LLQKFSSVER QIDAALEQGVEAVRT+ L GFS  + RFNL 
Sbjct: 181 RLCIGIGNPPGSMDMKAYLLQKFSSVERNQIDAALEQGVEAVRTIVLNGFSHKITRFNLG 240

Query: 241 QKYKYHKV 249
           QKYKYHKV
Sbjct: 241 QKYKYHKV 244

[Close]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match: gi|743875997|ref|XP_011035081.1| (PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic-like isoform X1 [Populus euphratica])

HSP 1 Score: 404.1 bits (1037), Expect = 1.8e-109
Identity = 198/249 (79.52%), Postives = 214/249 (85.94%), Query Frame = 1 

Query: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKR-LVPTRLSVRASLPDNDNGVKVEYTPWLIVGL 60
           MLYA S P  C+    S     SRF +R LV  RL VRASLPDN NGVKVEYTPWLIVGL
Sbjct: 1   MLYAISTPRTCISCPRS-----SRFHRRNLVSVRLCVRASLPDNGNGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPG KYHGTRHNVGFEMID IAQA+G+LMNTIQSKALIGIG IGEVPILLAKPQ YMNF
Sbjct: 61  GNPGTKYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNF 120

Query: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180
            GESVGPLA HY+IPLRHILL+YDEM+LPNG+LR+QPKGGHGHHNGVKSVM HLDG R+F
Sbjct: 121 SGESVGPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCRDF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQ+FS  ER+QIDA+LEQGVEA+RTL L GF+  + RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQRFSPTEREQIDASLEQGVEAMRTLILGGFTDKITRFNL 240

Query: 241 TQKYKYHKV 249
            QKYKYHKV
Sbjct: 241 GQKYKYHKV 244

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g13720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRS2B_ARATH1.0e-9670.71Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara... [more]
CRS2_MAIZE1.2e-9265.76Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea m... [more]
CRS2A_ARATH1.4e-9074.42Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Ara... [more]
CRS2_ORYSJ6.1e-8971.76Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza... [more]
PTHM_ARATH1.2e-6558.88Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2... [more]
BLAST of Cp4.1LG02g13720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCC6_CUCSA2.6e-12389.56Uncharacterized protein OS=Cucumis sativus GN=Csa_3G257600 PE=3 SV=1[more]
B9H311_POPTR1.9e-11080.32Peptidyl-tRNA hydrolase family protein OS=Populus trichocarpa GN=POPTR_0004s0973... [more]
A0A061EH51_THECC9.7e-11079.84Peptidyl-tRNA hydrolase family protein isoform 1 OS=Theobroma cacao GN=TCM_01942... [more]
A0A061EHT4_THECC1.1e-10886.64Peptidyl-tRNA hydrolase family protein isoform 3 (Fragment) OS=Theobroma cacao G... [more]
A0A068U3A3_COFCA2.4e-10878.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040260001 PE=3 SV=1[more]
BLAST of Cp4.1LG02g13720 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16140.15.8e-9870.71 Peptidyl-tRNA hydrolase family protein[more]
AT5G38290.28.1e-9274.42 Peptidyl-tRNA hydrolase family protein[more]
AT5G19830.16.9e-6758.88 Peptidyl-tRNA hydrolase family protein[more]
AT1G18440.17.2e-6451.30 Peptidyl-tRNA hydrolase family protein[more]
BLAST of Cp4.1LG02g13720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123230|ref|XP_008461557.1|3.6e-12691.60PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropla... [more]
gi|449455782|ref|XP_004145630.1|3.8e-12389.56PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropla... [more]
gi|224079329|ref|XP_002305823.1|2.8e-11080.32peptidyl-tRNA hydrolase family protein [Populus trichocarpa][more]
gi|590652761|ref|XP_007033235.1|1.4e-10979.84Peptidyl-tRNA hydrolase family protein isoform 1 [Theobroma cacao][more]
gi|743875997|ref|XP_011035081.1|1.8e-10979.52PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-A, chloropla... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR018171Pept_tRNA_hydro_CS
IPR001328Pept_tRNA_hydro
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13720.1Cp4.1LG02g13720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolaseGENE3DG3DSA:3.40.50.1470coord: 47..238
score: 1.1
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 53..231
score: 30
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 12..248
score: 3.1E
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 55..230
score: 1.5
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMsTIGR00447TIGR00447coord: 55..238
score: 1.8
IPR001328Peptidyl-tRNA hydrolaseunknownSSF53178Peptidyl-tRNA hydrolase-likecoord: 52..238
score: 5.89
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01195PEPT_TRNA_HYDROL_1coord: 66..79
scor
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 159..169
scor
NoneNo IPR availablePANTHERPTHR17224:SF3CHLOROPLASTIC GROUP IIB INTRON SPLICING FACILITATOR CRS2-A, CHLOROPLASTIC-RELATEDcoord: 12..248
score: 3.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g13720CmaCh01G004030Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g13720CmoCh01G004280Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g13720Cla007137Watermelon (97103) v1cpewmB571
Cp4.1LG02g13720MELO3C023748Melon (DHL92) v3.5.1cpemeB529
Cp4.1LG02g13720ClCG05G012320Watermelon (Charleston Gray)cpewcgB518
Cp4.1LG02g13720Lsi05G004130Bottle gourd (USVL1VR-Ls)cpelsiB470
Cp4.1LG02g13720MELO3C023748.2Melon (DHL92) v3.6.1cpemedB628
Cp4.1LG02g13720CsGy3G020030Cucumber (Gy14) v2cgybcpeB380
Cp4.1LG02g13720Carg07497Silver-seed gourdcarcpeB1072
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g13720Cucurbita pepo (Zucchini)cpecpeB357
Cp4.1LG02g13720Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG02g13720Cucurbita pepo (Zucchini)cpecpeB450
Cp4.1LG02g13720Cucumber (Gy14) v1cgycpeB0008
Cp4.1LG02g13720Cucurbita maxima (Rimu)cmacpeB279
Cp4.1LG02g13720Cucurbita maxima (Rimu)cmacpeB280
Cp4.1LG02g13720Cucurbita moschata (Rifu)cmocpeB241
Cp4.1LG02g13720Cucurbita moschata (Rifu)cmocpeB242
Cp4.1LG02g13720Wild cucumber (PI 183967)cpecpiB550
Cp4.1LG02g13720Cucumber (Chinese Long) v2cpecuB547
Cp4.1LG02g13720Bottle gourd (USVL1VR-Ls)cpelsiB475
Cp4.1LG02g13720Melon (DHL92) v3.5.1cpemeB541
Cp4.1LG02g13720Cucumber (Gy14) v2cgybcpeB096
Cp4.1LG02g13720Melon (DHL92) v3.6.1cpemedB630
Cp4.1LG02g13720Melon (DHL92) v3.6.1cpemedB641
Cp4.1LG02g13720Silver-seed gourdcarcpeB0672
Cp4.1LG02g13720Cucumber (Chinese Long) v3cpecucB0686
Cp4.1LG02g13720Wax gourdcpewgoB0673