Cp4.1LG02g11290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g11290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExtra-large GTP-binding protein 3
LocationCp4.1LG02 : 10235906 .. 10236666 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGATGAGTCTGTGAATCTCACCTTCCGACATCTCACAGACGTCAATGTTCAATCCAGAGCCAACCCATCAATCCAAATCCTAGGGAAGAAAGTGCATAGAATGTTTGGGAAGAAAATTCAGCCACAGGTTAATCATTGAACCCTCTGTCAGAGGAATACGATTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGGGCGTCCCCAAAAGGCCTCATACCAATGGAGTTAGTATTTCTCACTTATAAACCCATGATCATTCCCTAAATTAGTTGACGTGGGATTTCCATCATCCAACACCCTCCACCTTCATAGGAATTGATTTAAAAATTTATTAAACATTAGAGACTAAAATTGAATGGGGTATCATCCTTCATCAGGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCATGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACGGAGAGGGTGCGGCGGCGGTGGCGGTGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAG

mRNA sequence

ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGATGAGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCATGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACGGAGAGGGTGCGGCGGCGGTGGCGGTGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAG

Coding sequence (CDS)

ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGATGAGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCATGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACGGAGAGGGTGCGGCGGCGGTGGCGGTGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAG

Protein sequence

MDDGGGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPRRGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAMSSPHSPAHRHHLPF
Homology
[Close]
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match: A0A0A0LPU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  ++ L       YIG+AGDVGCF WRYS+AVK AELKWAEKGPRR+GERA  
Sbjct: 175 GEMTEGRKCIQCLGRKFSHRYIGKAGDVGCFSWRYSSAVKQAELKWAEKGPRRKGERALH 234

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAM--SSPHSPAHRHHLPF 123
           R   G GGGVTNS+SM S SQSPWAP TTSVD+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 235 R--RGYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHLPF 292

[Close]
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match: M5WSQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020112mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-11
Identity = 52/125 (41.60%), Postives = 60/125 (48.00%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  +E L       YI  AG VGCF  RY   VK AELKWAEKGPRR       
Sbjct: 247 GEMTEGRKCVECLGRRFSQRYIQRAGKVGCFS-RYPLIVKQAELKWAEKGPRR------- 306

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRF-------AAMSSPHSPAHR 123
              GG  G    S  M   S+SP AP T     +A  +S         ++  SP+SP HR
Sbjct: 307 --SGGNNGAYGGSTMMSPRSRSPMAPVTPRTPNTAHNTSSSPNSFVMNSSSYSPYSPTHR 361

[Close]
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match: A0A0D2MPA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152600 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-10
Identity = 49/100 (49.00%), Postives = 57/100 (57.00%), Query Frame = 1 

Query: 25  YIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPRRGCGGGGGGVTNSMSMMSAS 84
           YI  AG +GC  WRY + VK AELKWAEKGPRR GERA  R         T ++SMMS S
Sbjct: 209 YIKRAGKMGCC-WRYPSMVKQAELKWAEKGPRRSGERADGRS--------TVTLSMMSRS 268

Query: 85  QSPW-APATTSVDISAVYSS--RFAAMSSPHSPAHRHHLP 122
           +SP   P  T   ++   SS   F A S  +SP   HHLP
Sbjct: 269 RSPQRTPTGTRTTMATTTSSTPSFVATSPAYSPYTHHHLP 299

[Close]
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match: K7LR48_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G187100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 45/119 (37.82%), Postives = 54/119 (45.38%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  +E L       YI  AG  GC G RY + +KH EL WAEKGPRRRG+R   
Sbjct: 27  GDLTEGRKCMECLGLRFSQRYIERAGMAGCCGLRYPSTLKHVELNWAEKGPRRRGDRGHN 86

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAMSSPHSP--AHRHHLP 122
            G                AS  P  PA     +S   +     MS+ HSP  AH HH+P
Sbjct: 87  NG------------HHRMASTRPRNPANQRSPLSIASTEASFVMSATHSPFSAHHHHIP 133

[Close]
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match: B9SD75_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1162970 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 48/119 (40.34%), Postives = 56/119 (47.06%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  ++ L       YI  AG VGC   RY + VK AELKWAEKGPRR G+RA  
Sbjct: 18  GEMSEGRKCIQCLGRRFSQRYIQRAGMVGCCS-RYPSTVKQAELKWAEKGPRRSGDRA-- 77

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAMSSPHSP--AHRHHLP 122
                         SMMS S+SP  P TT        +       SP+SP   H HHLP
Sbjct: 78  ----------YGHNSMMSRSRSPVNPRTTPTRAHVNSNPPSFVSGSPYSPYSTHHHHLP 123

[Close]
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match: gi|659114912|ref|XP_008457288.1| (PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-35
Identity = 82/120 (68.33%), Postives = 91/120 (75.83%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  +E L       YIG+AGDVGCFGWRYS+AVK AELKWAEKGPRR+GERA  
Sbjct: 204 GEMTEGRKCIECLGRKFSHRYIGKAGDVGCFGWRYSSAVKQAELKWAEKGPRRKGERALH 263

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAM--SSPHSPAHRHHLPF 123
               G GGGVTNS+SM S SQSPWAP T+SVD+S +YSSRFA M  SSPHSPAHRHHLPF
Sbjct: 264 --SRGYGGGVTNSISMTSPSQSPWAPTTSSVDVSTIYSSRFAVMSSSSPHSPAHRHHLPF 321

[Close]
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match: gi|778656616|ref|XP_011649394.1| (PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  ++ L       YIG+AGDVGCF WRYS+AVK AELKWAEKGPRR+GERA  
Sbjct: 53  GEMTEGRKCIQCLGRKFSHRYIGKAGDVGCFSWRYSSAVKQAELKWAEKGPRRKGERALH 112

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAM--SSPHSPAHRHHLPF 123
           R   G GGGVTNS+SM S SQSPWAP TTSVD+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 113 R--RGYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHLPF 170

[Close]
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match: gi|700208824|gb|KGN63920.1| (hypothetical protein Csa_1G026000 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  ++ L       YIG+AGDVGCF WRYS+AVK AELKWAEKGPRR+GERA  
Sbjct: 175 GEMTEGRKCIQCLGRKFSHRYIGKAGDVGCFSWRYSSAVKQAELKWAEKGPRRKGERALH 234

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAM--SSPHSPAHRHHLPF 123
           R   G GGGVTNS+SM S SQSPWAP TTSVD+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 235 R--RGYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHLPF 292

[Close]
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match: gi|595843551|ref|XP_007208641.1| (hypothetical protein PRUPE_ppa020112mg [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 52/125 (41.60%), Postives = 60/125 (48.00%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDEYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPR 64
           G   + R  +E L       YI  AG VGCF  RY   VK AELKWAEKGPRR       
Sbjct: 247 GEMTEGRKCVECLGRRFSQRYIQRAGKVGCFS-RYPLIVKQAELKWAEKGPRR------- 306

Query: 65  RGCGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRF-------AAMSSPHSPAHR 123
              GG  G    S  M   S+SP AP T     +A  +S         ++  SP+SP HR
Sbjct: 307 --SGGNNGAYGGSTMMSPRSRSPMAPVTPRTPNTAHNTSSSPNSFVMNSSSYSPYSPTHR 361

[Close]
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match: gi|823143836|ref|XP_012471732.1| (PREDICTED: uncharacterized protein LOC105789064 [Gossypium raimondii])

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-10
Identity = 49/100 (49.00%), Postives = 57/100 (57.00%), Query Frame = 1 

Query: 25  YIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPRRGCGGGGGGVTNSMSMMSAS 84
           YI  AG +GC  WRY + VK AELKWAEKGPRR GERA  R         T ++SMMS S
Sbjct: 209 YIKRAGKMGCC-WRYPSMVKQAELKWAEKGPRRSGERADGRS--------TVTLSMMSRS 268

Query: 85  QSPW-APATTSVDISAVYSS--RFAAMSSPHSPAHRHHLP 122
           +SP   P  T   ++   SS   F A S  +SP   HHLP
Sbjct: 269 RSPQRTPTGTRTTMATTTSSTPSFVATSPAYSPYTHHHLP 299

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g11290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g11290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU0_CUCSA8.6e-3567.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1[more]
M5WSQ5_PRUPE8.6e-1141.60Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020112mg PE=4 SV=1[more]
A0A0D2MPA6_GOSRA5.6e-1049.00Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152600 PE=4 SV=1[more]
K7LR48_SOYBN4.7e-0937.82Uncharacterized protein OS=Glycine max GN=GLYMA_11G187100 PE=4 SV=1[more]
B9SD75_RICCO1.4e-0840.34Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1162970 PE=4 SV=1[more]
BLAST of Cp4.1LG02g11290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g11290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114912|ref|XP_008457288.1|4.2e-3568.33PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo][more]
gi|778656616|ref|XP_011649394.1|1.2e-3467.50PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativu... [more]
gi|700208824|gb|KGN63920.1|1.2e-3467.50hypothetical protein Csa_1G026000 [Cucumis sativus][more]
gi|595843551|ref|XP_007208641.1|1.2e-1041.60hypothetical protein PRUPE_ppa020112mg [Prunus persica][more]
gi|823143836|ref|XP_012471732.1|8.0e-1049.00PREDICTED: uncharacterized protein LOC105789064 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g11290.1Cp4.1LG02g11290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g11290Cucsa.111950Cucumber (Gy14) v1cgycpeB0261
Cp4.1LG02g11290CmaCh01G007330Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g11290CmoCh01G007620Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g11290Cla008098Watermelon (97103) v1cpewmB550
Cp4.1LG02g11290Csa1G026000Cucumber (Chinese Long) v2cpecuB533
Cp4.1LG02g11290MELO3C020485Melon (DHL92) v3.5.1cpemeB494
Cp4.1LG02g11290CSPI01G04780Wild cucumber (PI 183967)cpecpiB535
Cp4.1LG02g11290Lsi02G012080Bottle gourd (USVL1VR-Ls)cpelsiB444
Cp4.1LG02g11290MELO3C020485.2Melon (DHL92) v3.6.1cpemedB586
Cp4.1LG02g11290CsaV3_1G004770Cucumber (Chinese Long) v3cpecucB0665
Cp4.1LG02g11290Bhi08G000348Wax gourdcpewgoB0702
Cp4.1LG02g11290CsGy1G004670Cucumber (Gy14) v2cgybcpeB098
Cp4.1LG02g11290Carg07013Silver-seed gourdcarcpeB0738
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g11290Cp4.1LG00g04350Cucurbita pepo (Zucchini)cpecpeB010
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g11290Cucurbita pepo (Zucchini)cpecpeB434
Cp4.1LG02g11290Cucurbita maxima (Rimu)cmacpeB239
Cp4.1LG02g11290Cucurbita moschata (Rifu)cmocpeB206
Cp4.1LG02g11290Watermelon (Charleston Gray)cpewcgB502