CmoCh01G007620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G007620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionExtra-large GTP-binding protein 3
LocationCmo_Chr01 : 3933589 .. 3934796 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGACGAGTCAGTGAATCTCACCTTCCGACATCTCACAGACGTCAATGTTCAATCCAGAGCCAACCCATCAATCCAAATCCCAATCCCAAGAGATAATCAAAGCACCCCATTAACCAAACTCCCCAGCCTAGACTTCAACAGAGCCCTCCAAGCGGCCAACCAATACTCCCGCCCTGACGCCAAAATCAGCCTCCATCCGAGTGCGCAGGTCGGTGGGAGTAGTAGTGGGTCGCCGCTTGCCCCTGCCGGCCACATTCAAAGCCGTCCAACTTCGGAGCATGAGTACATGCATGCCCATGTTGGTGGGTTGAGGCCGGCTTTGGAGTACAGTGCAGCCTACGAGGAGGCAAGCCGCATCAGCGGCATGGGTTCCACGTATCTTCATCACAGAGCCACGCCGGGGAGACGCCGCCCGGGGATTCCTCACTCCAATATCTGCACCAACTGCACCACTTACATCTATGTCTTCCGCCATCGTTGCCTGGTATGCATCCATTTCATTTCTAACACACAAGAAAACACACTTACAGAAACAATCCACTGAAAACACATGCATATTGCTATGAATCTGGCAGGTCTGTGGAAGAGTTTACTGCCGGCAATGTGTGAGAATTGGGATGGGGGAGATGACGGAGGGAAGAAAGTGCATAGAATGTTTGGGAAGAAAATTCAGCCACAGGTTAATCATTGAACCCTCCAACTTTATAGGAATTGATTTAAAACTTCATTAAACATTAGAGACCAAAATTGAATGGGGTATCATCATTCATCAGGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCACGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACTGAGAGGGTGCGGTGGCGGTGGCGGTGGCGGCGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAGTTTCATGGTTTCGCCAATTCCTTATATTCATATTGTATTATTTTGACGTTTAAATCTATTTATCCG

mRNA sequence

ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGACGAGTCAGTGAATCTCACCTTCCGACATCTCACAGACGTCAATGTTCAATCCAGAGCCAACCCATCAATCCAAATCCCAATCCCAAGAGATAATCAAAGCACCCCATTAACCAAACTCCCCAGCCTAGACTTCAACAGAGCCCTCCAAGCGGCCAACCAATACTCCCGCCCTGACGCCAAAATCAGCCTCCATCCGAGTGCGCAGGTCGGTGGGAGTAGTAGTGGGTCGCCGCTTGCCCCTGCCGGCCACATTCAAAGCCGTCCAACTTCGGAGCATGAGTACATGCATGCCCATGTTGGTGGGTTGAGGCCGGCTTTGGAGTACAGTGCAGCCTACGAGGAGGCAAGCCGCATCAGCGGCATGGGTTCCACGTATCTTCATCACAGAGCCACGCCGGGGAGACGCCGCCCGGGGATTCCTCACTCCAATATCTGCACCAACTGCACCACTTACATCTATGTCTTCCGCCATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGTGTGAGAATTGGGATGGGGGAGATGACGGAGGGAAGAAAGTGCATAGAATGTTTGGGAAGAAAATTCAGCCACAGGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCACGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACTGAGAGGGTGCGGTGGCGGTGGCGGTGGCGGCGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAGTTTCATGGTTTCGCCAATTCCTTATATTCATATTGTATTATTTTGACGTTTAAATCTATTTATCCG

Coding sequence (CDS)

ATGGATGATGGAGGAGGGTTCAGAAAGGCAAGAATGGAGCTTGAAGCACTCTACGAGGGAGTGCCAGACGAGTCAGTGAATCTCACCTTCCGACATCTCACAGACGTCAATGTTCAATCCAGAGCCAACCCATCAATCCAAATCCCAATCCCAAGAGATAATCAAAGCACCCCATTAACCAAACTCCCCAGCCTAGACTTCAACAGAGCCCTCCAAGCGGCCAACCAATACTCCCGCCCTGACGCCAAAATCAGCCTCCATCCGAGTGCGCAGGTCGGTGGGAGTAGTAGTGGGTCGCCGCTTGCCCCTGCCGGCCACATTCAAAGCCGTCCAACTTCGGAGCATGAGTACATGCATGCCCATGTTGGTGGGTTGAGGCCGGCTTTGGAGTACAGTGCAGCCTACGAGGAGGCAAGCCGCATCAGCGGCATGGGTTCCACGTATCTTCATCACAGAGCCACGCCGGGGAGACGCCGCCCGGGGATTCCTCACTCCAATATCTGCACCAACTGCACCACTTACATCTATGTCTTCCGCCATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGTGTGAGAATTGGGATGGGGGAGATGACGGAGGGAAGAAAGTGCATAGAATGTTTGGGAAGAAAATTCAGCCACAGGTACATAGGGGAGGCAGGAGATGTGGGGTGCTTCGGTTGGAGGTACTCAACTGCGGTGAAGCACGCAGAGCTTAAGTGGGCGGAGAAAGGGCCTCGCCGGAGAGGAGAGAGAGCCCCACTGAGAGGGTGCGGTGGCGGTGGCGGTGGCGGCGGGGTAACGAACTCCATGAGTATGATGTCGGCAAGTCAGAGCCCATGGGCACCGGCCACAACCAGTGTGGATATTTCCGCCGTTTACAGCTCTCGTTTCGCCGCCATGTCGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCGTTTTAG
Homology
[Close]
BLAST of CmoCh01G007620 vs. TrEMBL
Match: A0A0A0LPU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118
Identity = 231/329 (70.21%), Postives = 246/329 (74.77%), Query Frame = 1 

Query: 3   DGGGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQS-------RANPSIQIPIP---- 62
           D GGFRKAR+ELEALYEGVPD+SVNLTFRHLTDVN+Q        RANPSI IPIP    
Sbjct: 2   DDGGFRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRANPSIPIPIPIPIP 61

Query: 63  RDNQSTPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPLAPAGHIQSRP 122
            D ++TPL KLPSLDFNRALQAANQ+SRPDAKISLHPSAQ G                  
Sbjct: 62  GDKETTPLNKLPSLDFNRALQAANQHSRPDAKISLHPSAQCG------------------ 121

Query: 123 TSEHEYMHAHVGGLRPALEYSAAYEEASRISGMGSTYLHHRATPGRRRPGIPHSNICTNC 182
                        LR    Y       SRI G+GS Y HHRAT G RRPGIPHSNICTNC
Sbjct: 122 -------------LRGGKPYHGG---ESRIGGIGSMYDHHRATAGSRRPGIPHSNICTNC 181

Query: 183 TTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFGW 242
           TTYIY+FRHRCLVCGRVYCRQCVRIGMGEMTEGRKCI+CLGRKFSHRYIG+AGDVGCF W
Sbjct: 182 TTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIQCLGRKFSHRYIGKAGDVGCFSW 241

Query: 243 RYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQSPWAPATTSV 302
           RYS+AVK AELKWAEKGPRR+GERA  R     G GGGVTNS+SM S SQSPWAP TTSV
Sbjct: 242 RYSSAVKQAELKWAEKGPRRKGERALHR----RGYGGGVTNSISMTSPSQSPWAPTTTSV 292

Query: 303 DISAVYSSRFAAM--SSPHSPAHRHHLPF 319
           D+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 302 DVSTIYSSRFAVMSTSSPHSPVHRHHLPF 292

[Close]
BLAST of CmoCh01G007620 vs. TrEMBL
Match: A0A0D2MPA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152600 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 8.2e-61
Identity = 157/327 (48.01%), Postives = 190/327 (58.10%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQSRANP-----SIQIPIPRDNQSTP- 64
           G   KAR+ELE LY G+PD+SVNLTF+ L D+  ++ A+      S   P+ +DN  TP 
Sbjct: 2   GDLAKARVELEQLYLGIPDDSVNLTFQDLADMKQKASASDNKRSTSAMDPLQQDNAPTPK 61

Query: 65  -----LTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPLAPAGHIQSRPTS 124
                LTKLPSLDF+R LQ  N +     K  +H +     S  G     A   Q++ TS
Sbjct: 62  QLGSSLTKLPSLDFSRGLQGTNHHH----KHYVHDTDNFD-SHMGMDHHRAWKDQTQRTS 121

Query: 125 EHEYMHAHVGGLRPALEYSAAYEEASRISGMGSTYLHHRATPGRRRPGIPHSNICTNCTT 184
              +             +  +Y++ S IS M S Y        RRRPGIPHSNICT C+T
Sbjct: 122 PRGHTE---------FRHGVSYDDVSVIS-MASNYPERGQ---RRRPGIPHSNICTICST 181

Query: 185 YIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFGWRY 244
           YIY+FRHRCLVCGRVYCRQCV IGMGEM EGRKC+ CLGR+FS RYI  AG +GC  WRY
Sbjct: 182 YIYIFRHRCLVCGRVYCRQCVCIGMGEMAEGRKCVLCLGRRFSPRYIKRAGKMGCC-WRY 241

Query: 245 STAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQSPW-APATTSVD 304
            + VK AELKWAEKGPRR GERA           G  T ++SMMS S+SP   P  T   
Sbjct: 242 PSMVKQAELKWAEKGPRRSGERA----------DGRSTVTLSMMSRSRSPQRTPTGTRTT 299

Query: 305 ISAVYSS--RFAAMSSPHSPAHRHHLP 318
           ++   SS   F A S  +SP   HHLP
Sbjct: 302 MATTTSSTPSFVATSPAYSPYTHHHLP 299

[Close]
BLAST of CmoCh01G007620 vs. TrEMBL
Match: B9INL9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s15060g PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-57
Identity = 153/338 (45.27%), Postives = 189/338 (55.92%), Query Frame = 1 

Query: 1   MDDGGGFRKARMELEALYEGVPDESVNLTFRHLT------------DVNVQSRANPSIQI 60
           M D     KARMELE LY G+PD+SVNLTF+ L              +N  +   P  + 
Sbjct: 1   MGDLKTLAKARMELEELYSGIPDDSVNLTFQDLAIHVKQSKNSTPEKINTTTNKEPIQEA 60

Query: 61  PIPRDNQSTPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSS--SGSPLAPAGH 120
             P+  Q +PLTKLPSLDFNR LQA+  + +P      HP  Q    +       +P G 
Sbjct: 61  KTPK--QVSPLTKLPSLDFNRGLQASKNHQQPRHLAEGHPLGQSHKHNLQHDDTHSPCGT 120

Query: 121 IQSRPTSEHEYMHAHVGGLRP-----ALEYSAAYEEASRISGMGSTYLHHRATPGRRRPG 180
           I S    +  + HA++G   P     A E S  +++ S +S M S Y      P  RRPG
Sbjct: 121 IGSYHHDQSNHGHANIGRKGPSKSRFAPERSREFDDVSVMS-MDSMYQERSGRP--RRPG 180

Query: 181 IPHSNICTNCTTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIG 240
           IPHSNIC  C+TYIY+FRHRCLVCGRV+CR CV IGMGEMTEGRKCI+CLGR+FS RYI 
Sbjct: 181 IPHSNICAVCSTYIYIFRHRCLVCGRVHCRNCVSIGMGEMTEGRKCIDCLGRRFSQRYIS 240

Query: 241 EAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQ 300
            AG VGC    Y + VK AEL+WAEKGPRR GERA        G G   + S + MS   
Sbjct: 241 RAGMVGCCS-GYPSDVKQAELRWAEKGPRRAGERA-------FGHGNMTSRSRNPMSTPP 300

Query: 301 SP--WAPATTSVDISAVYSSRFAAMSSPHSPAHRHHLP 318
            P   A  + S D+ +  +S   +  SP+S    H LP
Sbjct: 301 RPSNKAGVSMSQDLPSFVTS---SPYSPYSTPKHHQLP 322

[Close]
BLAST of CmoCh01G007620 vs. TrEMBL
Match: A0A061GZ03_THECC (Extra-large GTP-binding protein 3 OS=Theobroma cacao GN=TCM_042288 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 160/350 (45.71%), Postives = 193/350 (55.14%), Query Frame = 1 

Query: 1   MDDGGGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQSRAN---------PSIQIPIP 60
           M D     KARMELE +Y G+PD+SVNLTF+ L D+  ++ A+         P  +   P
Sbjct: 1   MGDLETLAKARMELEEMYLGIPDDSVNLTFQDLADMKPKANASEKKKSTSVEPLQEAKNP 60

Query: 61  RDNQSTPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPLAPAGHIQSRP 120
           +  Q++PLTK PSLDFNR L+A   +S    K  L    +     S   +    H     
Sbjct: 61  K--QASPLTK-PSLDFNRGLRATEDHSHYHHKHYLERGYEDDNFDSHIDMGHHHHHHHHR 120

Query: 121 TSEHEYMHAHVG------------------GL---RPALEYSAAYEEASRISGMGSTYLH 180
             + E MHA  G                  GL   R  +E S AY++ S IS M S Y  
Sbjct: 121 HHDGENMHAWDGHRYGTDDQSHRIHATSPRGLAEFRHGVERSMAYDDESVIS-MASNYPE 180

Query: 181 HRATPGRRRPGIPHSNICTNCTTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIEC 240
                 RRRPGIPHSNICT CTT IY+FRHRCLVCGRVYCRQCV +GMGEMTEGRKCI C
Sbjct: 181 RGQ---RRRPGIPHSNICTICTTSIYIFRHRCLVCGRVYCRQCVCMGMGEMTEGRKCILC 240

Query: 241 LGRKFSHRYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGV 300
           LGR+FS RYI  AG +GC   RY ++VK AELKWAEKGPRR GERA  R           
Sbjct: 241 LGRRFSQRYIKRAGKMGCCS-RYPSSVKQAELKWAEKGPRRSGERAYGRS---------- 300

Query: 301 TNSMSMMSASQSPWAPATTSVDISAVYSSRFAAMS---SPHSPAHRHHLP 318
               +MM  S+SP  P T +   +   +  F A S   SP++P H HHLP
Sbjct: 301 ----AMMPRSRSPAKPRTPTRAHATSAAPSFVASSPAYSPYTPTH-HHLP 327

[Close]
BLAST of CmoCh01G007620 vs. TrEMBL
Match: B9I6Y1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15300g PE=4 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 153/348 (43.97%), Postives = 181/348 (52.01%), Query Frame = 1 

Query: 10  ARMELEALYEGVPDESVNLTFRHLT-------------DVNVQSRANPSIQIPIPRDNQS 69
           ARMELE LY G+PD+SVNLTF  L               +N  + +  SIQ  +    Q+
Sbjct: 10  ARMELEELYLGIPDDSVNLTFEDLAIHVKQHISSTTSEKINTTTTSLESIQEVVQTPKQA 69

Query: 70  TPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPL-------------AP 129
            PLTKLPSLDFN+ LQA+  +         H S  +   S G P               P
Sbjct: 70  APLTKLPSLDFNKGLQASKNH---------HQSHHLDHVSEGHPFDKSHKHYLHDGTHRP 129

Query: 130 AGHIQSRPTSEHEYMHAHVGGLRP-----ALEYSAAYEEAS-RISGMGSTYLHHRATPGR 189
            G         H ++HA++G   P     A+E S  Y++    +  M S Y      P  
Sbjct: 130 YGSGGQYHDQSH-HVHANIGPKSPSKSRFAMERSREYDDDDVSVMNMNSMYQERSGRP-- 189

Query: 190 RRPGIPHSNICTNCTTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSH 249
           RRPGIPHSNICT C+TYIY+FRHRCLVCGRV+CR CV  GMGEMTEGRKCIECLGRKFS 
Sbjct: 190 RRPGIPHSNICTVCSTYIYIFRHRCLVCGRVFCRNCVSAGMGEMTEGRKCIECLGRKFSQ 249

Query: 250 RYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMM 309
           RYI  AG VGC    Y +AVK AELKWAEKGPR+ GERA                  +M 
Sbjct: 250 RYINRAGIVGCCS-GYPSAVKQAELKWAEKGPRKAGERA--------------FGHSTMT 309

Query: 310 SASQSPWAPATTSVDISAVYSSR--------FAAMSSPHSPAHRHHLP 318
           S S+SP  P T      A   S          +A  SP+S    HHLP
Sbjct: 310 SRSRSPLTPRTPRTPNKAAGVSMSQDLPSFVTSAPYSPYSTPKHHHLP 330

[Close]
BLAST of CmoCh01G007620 vs. NCBI nr
Match: gi|659114912|ref|XP_008457288.1| (PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo])

HSP 1 Score: 504.6 bits (1298), Expect = 1.3e-139
Identity = 265/330 (80.30%), Postives = 280/330 (84.85%), Query Frame = 1 

Query: 3   DGGGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQS-------RANPSIQIPIP---- 62
           D GGFRKAR+ELEALYEGVPD+SVNLTFRHLTDVN+Q        RANPSI IPIP    
Sbjct: 2   DDGGFRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRANPSIPIPIPIPIP 61

Query: 63  RDNQSTPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPL-APAGHIQSR 122
            DN++TPL KLPSLDFNRALQAANQ+SRPDAKISLHPSAQVGGS  G PL A AG IQS 
Sbjct: 62  GDNETTPLNKLPSLDFNRALQAANQHSRPDAKISLHPSAQVGGS--GGPLHATAGDIQSH 121

Query: 123 PTSEHEYMHAHVGGLRPALEYSAAYEEASRISGMGSTYLHHRATPGRRRPGIPHSNICTN 182
           P SEHE    HVGGLRPALEYSAAYEEASRISG+GS Y HHRAT   RRPGIPHSNICTN
Sbjct: 122 PKSEHE----HVGGLRPALEYSAAYEEASRISGIGSMYGHHRATARSRRPGIPHSNICTN 181

Query: 183 CTTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFG 242
           CTTYIY+FRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIG+AGDVGCFG
Sbjct: 182 CTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGKAGDVGCFG 241

Query: 243 WRYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQSPWAPATTS 302
           WRYS+AVK AELKWAEKGPRR+GERA        G GGGVTNS+SM S SQSPWAP T+S
Sbjct: 242 WRYSSAVKQAELKWAEKGPRRKGERA----LHSRGYGGGVTNSISMTSPSQSPWAPTTSS 301

Query: 303 VDISAVYSSRFAAM--SSPHSPAHRHHLPF 319
           VD+S +YSSRFA M  SSPHSPAHRHHLPF
Sbjct: 302 VDVSTIYSSRFAVMSSSSPHSPAHRHHLPF 321

[Close]
BLAST of CmoCh01G007620 vs. NCBI nr
Match: gi|700208824|gb|KGN63920.1| (hypothetical protein Csa_1G026000 [Cucumis sativus])

HSP 1 Score: 433.7 bits (1114), Expect = 2.7e-118
Identity = 231/329 (70.21%), Postives = 246/329 (74.77%), Query Frame = 1 

Query: 3   DGGGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQS-------RANPSIQIPIP---- 62
           D GGFRKAR+ELEALYEGVPD+SVNLTFRHLTDVN+Q        RANPSI IPIP    
Sbjct: 2   DDGGFRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRANPSIPIPIPIPIP 61

Query: 63  RDNQSTPLTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPLAPAGHIQSRP 122
            D ++TPL KLPSLDFNRALQAANQ+SRPDAKISLHPSAQ G                  
Sbjct: 62  GDKETTPLNKLPSLDFNRALQAANQHSRPDAKISLHPSAQCG------------------ 121

Query: 123 TSEHEYMHAHVGGLRPALEYSAAYEEASRISGMGSTYLHHRATPGRRRPGIPHSNICTNC 182
                        LR    Y       SRI G+GS Y HHRAT G RRPGIPHSNICTNC
Sbjct: 122 -------------LRGGKPYHGG---ESRIGGIGSMYDHHRATAGSRRPGIPHSNICTNC 181

Query: 183 TTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFGW 242
           TTYIY+FRHRCLVCGRVYCRQCVRIGMGEMTEGRKCI+CLGRKFSHRYIG+AGDVGCF W
Sbjct: 182 TTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIQCLGRKFSHRYIGKAGDVGCFSW 241

Query: 243 RYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQSPWAPATTSV 302
           RYS+AVK AELKWAEKGPRR+GERA  R     G GGGVTNS+SM S SQSPWAP TTSV
Sbjct: 242 RYSSAVKQAELKWAEKGPRRKGERALHR----RGYGGGVTNSISMTSPSQSPWAPTTTSV 292

Query: 303 DISAVYSSRFAAM--SSPHSPAHRHHLPF 319
           D+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 302 DVSTIYSSRFAVMSTSSPHSPVHRHHLPF 292

[Close]
BLAST of CmoCh01G007620 vs. NCBI nr
Match: gi|778656616|ref|XP_011649394.1| (PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 144/173 (83.24%), Postives = 152/173 (87.86%), Query Frame = 1 

Query: 148 YLHHRATPGRRRPGIPHSNICTNCTTYIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKC 207
           Y HHRAT G RRPGIPHSNICTNCTTYIY+FRHRCLVCGRVYCRQCVRIGMGEMTEGRKC
Sbjct: 2   YDHHRATAGSRRPGIPHSNICTNCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKC 61

Query: 208 IECLGRKFSHRYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRRGERAPLRGCGGGGGG 267
           I+CLGRKFSHRYIG+AGDVGCF WRYS+AVK AELKWAEKGPRR+GERA  R     G G
Sbjct: 62  IQCLGRKFSHRYIGKAGDVGCFSWRYSSAVKQAELKWAEKGPRRKGERALHR----RGYG 121

Query: 268 GGVTNSMSMMSASQSPWAPATTSVDISAVYSSRFAAM--SSPHSPAHRHHLPF 319
           GGVTNS+SM S SQSPWAP TTSVD+S +YSSRFA M  SSPHSP HRHHLPF
Sbjct: 122 GGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHLPF 170

[Close]
BLAST of CmoCh01G007620 vs. NCBI nr
Match: gi|645215717|ref|XP_008245353.1| (PREDICTED: uncharacterized protein LOC103343448 [Prunus mume])

HSP 1 Score: 246.5 bits (628), Expect = 6.2e-62
Identity = 163/373 (43.70%), Postives = 193/373 (51.74%), Query Frame = 1 

Query: 1   MDDGGGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQSRANPSIQIPIPRDNQS---- 60
           M D     KARMELE +Y+G+PDESVNLTF+   ++ +   A+   + P P  ++S    
Sbjct: 1   MGDKATLAKARMELEDMYQGIPDESVNLTFQDFAELKLNRIASSEKKKPNPILSESISEL 60

Query: 61  ---------TPLTKLPSLDFNRALQAA-------------------NQYSRPDAKISLHP 120
                    +PLTKLPSLDFNRALQA+                   N +       S H 
Sbjct: 61  KYTTQPSSPSPLTKLPSLDFNRALQASSINLSHHHVDHAGPYRGHVNHHLDHHQMNSHHD 120

Query: 121 SAQVGGSSSGSPLAPA---GHIQSRPTSEHEYMHAHV-----------GGLRPALEYS-A 180
                G+  G     +    H Q      H   + H+           GGLR  LE S  
Sbjct: 121 LGHDHGTHHGHASRGSHGHSHYQGHGNDGHAMNNHHMNSPAGPTCHAGGGLRHGLETSLG 180

Query: 181 AYE-EASRISGMGSTYLHHRATPGRRRPGIPHSNICTNCTTYIYVFRHRCLVCGRVYCRQ 240
           AY+ + S IS     Y   +   GRRRPGIPHSNICT C+TYIY+FRHRCLVCGRVYCRQ
Sbjct: 181 AYDHDVSGISMASGVYNQQKDRGGRRRPGIPHSNICTLCSTYIYIFRHRCLVCGRVYCRQ 240

Query: 241 CVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFGWRYSTAVKHAELKWAEKGPRRR 300
           CV  GMGEMTEGRKC+ECLGR+FS RYI  AG VGCF  RY   VK AELKWAEKGPRR 
Sbjct: 241 CVMFGMGEMTEGRKCVECLGRRFSQRYIQRAGKVGCFS-RYPFIVKQAELKWAEKGPRR- 300

Query: 301 GERAPLRGCGGGGGGGGVTNSMSMMSASQSPWAPATTSVDISAVYSSRF-------AAMS 319
                          GG   S  M   S+SP  P T     +A  +S          +  
Sbjct: 301 --------------SGGNNGSTMMSLRSRSPMTPVTPRTPNTAHNTSSSPNSFVMNTSSY 357

[Close]
BLAST of CmoCh01G007620 vs. NCBI nr
Match: gi|823143836|ref|XP_012471732.1| (PREDICTED: uncharacterized protein LOC105789064 [Gossypium raimondii])

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 157/327 (48.01%), Postives = 190/327 (58.10%), Query Frame = 1 

Query: 5   GGFRKARMELEALYEGVPDESVNLTFRHLTDVNVQSRANP-----SIQIPIPRDNQSTP- 64
           G   KAR+ELE LY G+PD+SVNLTF+ L D+  ++ A+      S   P+ +DN  TP 
Sbjct: 2   GDLAKARVELEQLYLGIPDDSVNLTFQDLADMKQKASASDNKRSTSAMDPLQQDNAPTPK 61

Query: 65  -----LTKLPSLDFNRALQAANQYSRPDAKISLHPSAQVGGSSSGSPLAPAGHIQSRPTS 124
                LTKLPSLDF+R LQ  N +     K  +H +     S  G     A   Q++ TS
Sbjct: 62  QLGSSLTKLPSLDFSRGLQGTNHHH----KHYVHDTDNFD-SHMGMDHHRAWKDQTQRTS 121

Query: 125 EHEYMHAHVGGLRPALEYSAAYEEASRISGMGSTYLHHRATPGRRRPGIPHSNICTNCTT 184
              +             +  +Y++ S IS M S Y        RRRPGIPHSNICT C+T
Sbjct: 122 PRGHTE---------FRHGVSYDDVSVIS-MASNYPERGQ---RRRPGIPHSNICTICST 181

Query: 185 YIYVFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCIECLGRKFSHRYIGEAGDVGCFGWRY 244
           YIY+FRHRCLVCGRVYCRQCV IGMGEM EGRKC+ CLGR+FS RYI  AG +GC  WRY
Sbjct: 182 YIYIFRHRCLVCGRVYCRQCVCIGMGEMAEGRKCVLCLGRRFSPRYIKRAGKMGCC-WRY 241

Query: 245 STAVKHAELKWAEKGPRRRGERAPLRGCGGGGGGGGVTNSMSMMSASQSPW-APATTSVD 304
            + VK AELKWAEKGPRR GERA           G  T ++SMMS S+SP   P  T   
Sbjct: 242 PSMVKQAELKWAEKGPRRSGERA----------DGRSTVTLSMMSRSRSPQRTPTGTRTT 299

Query: 305 ISAVYSS--RFAAMSSPHSPAHRHHLP 318
           ++   SS   F A S  +SP   HHLP
Sbjct: 302 MATTTSSTPSFVATSPAYSPYTHHHLP 299

The following BLAST results are available for this feature:
BLAST of CmoCh01G007620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU0_CUCSA1.9e-11870.21Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1[more]
A0A0D2MPA6_GOSRA8.2e-6148.01Uncharacterized protein OS=Gossypium raimondii GN=B456_003G152600 PE=4 SV=1[more]
B9INL9_POPTR1.9e-5745.27Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s15060g PE=4 SV=1[more]
A0A061GZ03_THECC2.5e-5745.71Extra-large GTP-binding protein 3 OS=Theobroma cacao GN=TCM_042288 PE=4 SV=1[more]
B9I6Y1_POPTR2.5e-5743.97Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15300g PE=4 SV=2[more]
BLAST of CmoCh01G007620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114912|ref|XP_008457288.1|1.3e-13980.30PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo][more]
gi|700208824|gb|KGN63920.1|2.7e-11870.21hypothetical protein Csa_1G026000 [Cucumis sativus][more]
gi|778656616|ref|XP_011649394.1|1.8e-7783.24PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativu... [more]
gi|645215717|ref|XP_008245353.1|6.2e-6243.70PREDICTED: uncharacterized protein LOC103343448 [Prunus mume][more]
gi|823143836|ref|XP_012471732.1|1.2e-6048.01PREDICTED: uncharacterized protein LOC105789064 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G007620.1CmoCh01G007620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011011Zinc finger, FYVE/PHD-typeunknownSSF57903FYVE/PHD zinc fingercoord: 165..211
score: 2.0
NoneNo IPR availablePANTHERPTHR36486FAMILY NOT NAMEDcoord: 1..315
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G007620Cucsa.111950Cucumber (Gy14) v1cgycmoB0267
CmoCh01G007620CmaCh01G007330Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G007620Cla008098Watermelon (97103) v1cmowmB422
CmoCh01G007620Csa1G026000Cucumber (Chinese Long) v2cmocuB417
CmoCh01G007620MELO3C020485Melon (DHL92) v3.5.1cmomeB382
CmoCh01G007620CSPI01G04780Wild cucumber (PI 183967)cmocpiB421
CmoCh01G007620Lsi02G012080Bottle gourd (USVL1VR-Ls)cmolsiB403
CmoCh01G007620Cp4.1LG00g04350Cucurbita pepo (Zucchini)cmocpeB417
CmoCh01G007620Cp4.1LG02g11290Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G007620MELO3C020485.2Melon (DHL92) v3.6.1cmomedB439
CmoCh01G007620CsaV3_1G004770Cucumber (Chinese Long) v3cmocucB0501
CmoCh01G007620Cla97C03G050870Watermelon (97103) v2cmowmbB449
CmoCh01G007620Bhi08G000348Wax gourdcmowgoB0590
CmoCh01G007620CsGy1G004670Cucumber (Gy14) v2cgybcmoB099
CmoCh01G007620Carg07013Silver-seed gourdcarcmoB0708
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G007620Cucurbita pepo (Zucchini)cmocpeB441
CmoCh01G007620Bottle gourd (USVL1VR-Ls)cmolsiB384
CmoCh01G007620Bottle gourd (USVL1VR-Ls)cmolsiB391
CmoCh01G007620Bottle gourd (USVL1VR-Ls)cmolsiB408
CmoCh01G007620Cucumber (Gy14) v2cgybcmoB345
CmoCh01G007620Cucumber (Gy14) v2cgybcmoB480
CmoCh01G007620Melon (DHL92) v3.6.1cmomedB470
CmoCh01G007620Cucumber (Chinese Long) v3cmocucB0538
CmoCh01G007620Watermelon (97103) v2cmowmbB424
CmoCh01G007620Watermelon (97103) v2cmowmbB443
CmoCh01G007620Watermelon (97103) v2cmowmbB451
CmoCh01G007620Wax gourdcmowgoB0575
CmoCh01G007620Wax gourdcmowgoB0579
CmoCh01G007620Cucurbita moschata (Rifu)cmocmoB173
CmoCh01G007620Cucurbita moschata (Rifu)cmocmoB205
CmoCh01G007620Cucurbita moschata (Rifu)cmocmoB359
CmoCh01G007620Cucumber (Gy14) v1cgycmoB0502
CmoCh01G007620Cucurbita maxima (Rimu)cmacmoB226
CmoCh01G007620Melon (DHL92) v3.5.1cmomeB412
CmoCh01G007620Watermelon (Charleston Gray)cmowcgB382
CmoCh01G007620Watermelon (Charleston Gray)cmowcgB398
CmoCh01G007620Watermelon (Charleston Gray)cmowcgB403
CmoCh01G007620Watermelon (97103) v1cmowmB450
CmoCh01G007620Watermelon (97103) v1cmowmB408