Cp4.1LG02g10700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g10700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCp4.1LG02 : 9326893 .. 9329044 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCCGAAGAGGGTAATCAGTAGGCCTCAGTCGGGGATGGGTTTGTTGTAGAAATTTCCTAAAGTTGCAGGCAACCAAGAGGGTAATCAGGCAATAGGCAATAGGCAATAGGCAATAGGCAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTCGTGTGATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGTCCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGGTATTTCGCCATTCCCTTATCTCACAACCCATCACCGACACCCTTTTCTTTCTTTTTCTGAGAAATCTTACACAACTTGCTTCGCTTTTCTCCCTTCCCTCCAATAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGGTATGTTTCTCTCCATTCAAGTGCTTTTGCTTCTAATTACTCCATCCCCATGTTTGAATTGTTTCTATAGCCTAAATTGTACTGCAAACTAGTTACTGAATGTTCAGATCCTCAAAAATTTCAAACCCCATATGAATTTCAACTCAGTTTCCATGAGTTGGGTTCATAATTTCTAAATTCGGTGATGGAAGTATCAGTATTACTTGAAGAATTGACAAACTCACTTAACTTTTTGTTGATTCATTGCGTTCGTGAGGTACGCGTAAGAGGAATTTTTGTATATATGGCCACAAGGGTCCAGTTCTGATTTCCATTTCGTTTAGAAGAAGATATCGCATCAATGAAGTATTGAGTAATTAATCATGTTTATCCTGATTAGCTTAGTGACAGTTTTATCAGTTCCAGAATGAATTATCATATAATCTATGCTTGTTCTTGCCTTCTTTCTTATTATGTTTTACATTATCACTGCAGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTCGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGTAAGTTTCTTTTTCTCACCAGATGCAGAGCTATATCTAATCTACACATATTTATACAAACTTATCTGTTCTCTGCTTTTTTCTTTGACAGGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTGATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCTGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAGCGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTGTAAGTAATATAACTTTTTGCTCCTACTCTTACTGTAAGGAATGGTTTTACTTGCAATGTGAAACGGGAGGAGAATTGAGAACTGGTAGAGTTGTTGAATTGTTGCTTTCATTTCTTTGAGTACCCAACTCCCCAAGGCTTTTCCAGCTGATCATTCATTTTTGTCTATTCCTAATGGAGTTCACTGGCCACCCACTTCGCTTTCTTCTTGTTTGCCCATCTTTTTTGTTCCAATCAGTGTATAATGCTGCCAAAATGGCAAACTATCTTCAGATAACAACACTGGATCTGCACATGGGTGGGGTGAACAAGAAAAGGAACAATGCAGAAATATGTTACTAAGAGTGTTTAAATGAACTTCATAAATTATAAAAATACATCATATGTCGAAATCATTATAGAAAATATGCTTGATGATTTCAAAACAATACCCTTAAAAATCATTCTATACTCATTGTAGTTCTTCTTTTGCAGAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATCTGTCACATGCTTACAGAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGAGGTGCGCAGAGACGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTTTCTGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGCAACCATTTTTCTGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAACTCTTAACAAATTGAAGAGCTAACCCCAACAGGTTTCTAATAATT

mRNA sequence

GGGCCGAAGAGGGTAATCAGTAGGCCTCAGTCGGGGATGGGTTTGTTGTAGAAATTTCCTAAAGTTGCAGGCAACCAAGAGGGTAATCAGGCAATAGGCAATAGGCAATAGGCAATAGGCAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTCGTGTGATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGTCCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTCGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTGATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCTGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAGCGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATCTGTCACATGCTTACAGAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGAGGTGCGCAGAGACGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTTTCTGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGCAACCATTTTTCTGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAACTCTTAACAAATTGAAGAGCTAACCCCAACAGGTTTCTAATAATT

Coding sequence (CDS)

ATGGAAGTGAAGGTCGGGCAGAGAAATGGAGTAGTCCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAACATCCTTGAAGAATCACTTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTCGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTGATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCTGTTAAGGAACCAGAGGGAGAACGTCACAACTTCAGAAGCGGCCATTGGAGATCTGCTCTTCGAGAGATAAGGGAATTGGATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATCTGTCACATGCTTACAGAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATGGGGCTACTGGCGAGGAGGTGCGCAGAGACGACCTGGACAGGAATAG

Protein sequence

MEVKVGQRNGVVRSPLLPQPILPSLLTPHRNWANAKTSLKNHFRAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE
Homology
[Close]
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match: A0A0A0KSX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650530 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-59
Identity = 116/163 (71.17%), Postives = 136/163 (83.44%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGLR Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 118 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 177

Query: 104 GASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGER  FRSGHWRSALR+IRELDGLD E+ I STSPSE++Q
Sbjct: 178 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 237

Query: 164 ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           ISVE+LSHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 238 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 279

[Close]
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match: A0A067DX20_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0248531mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 74/159 (46.54%), Postives = 96/159 (60.38%), Query Frame = 1 

Query: 53  YQLQEKLQSSLN------GLRKYQMHFTLACPRLPPARTTS-LVVLVPLIVFCAKCIIGA 112
           + L+E LQ SLN        + + M  T     LP A+TT   +V+VPLI FC +C+IGA
Sbjct: 50  FDLKETLQHSLNIFYGPLDKKYFVMEITHG---LPQAKTTGYFLVVVPLIAFCIRCMIGA 109

Query: 113 SYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ-- 172
            + R+ G S  +     +G     +S  W+SALR+I E D LDS S   +  P EEQ   
Sbjct: 110 FHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEED-LDSGSRPRTNDPVEEQDQA 169

Query: 173 ---ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGA 200
              IS E+ SHAYRKL+ DY+KFLSECG+SKWGYWRGG+
Sbjct: 170 QPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGS 204

[Close]
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match: F6I444_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g02170 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 1 

Query: 52  RYQLQEKLQSSLNGLRKYQMHF--------------TLACPRLPPARTTS-LVVLVPLIV 111
           ++Q ++   SS + L+++Q                  L+   L  A+ T   +VLVPLI 
Sbjct: 114 KFQTEKSKLSSFDTLKRHQHSLEVLGGRLNQKLCTVALSFHSLSHAKATGYFLVLVPLIA 173

Query: 112 FCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYST 171
           FC +CIIGA   RV G  R + V E E + H  +S  W+SAL +IRE D LD+     S 
Sbjct: 174 FCIRCIIGAFQNRVVGDLRHQAVNESEVDYHGSKSVRWKSALDDIREPDTLDTGLQPDSI 233

Query: 172 SPSEEQ-QISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGA 200
           +PSE Q Q S E++SHAY KL+ DY +FLSECG+SKWGYWRGG+
Sbjct: 234 NPSEVQTQGSAEEVSHAYGKLEHDYQQFLSECGISKWGYWRGGS 277

[Close]
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match: V4TN61_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021221mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 73/159 (45.91%), Postives = 95/159 (59.75%), Query Frame = 1 

Query: 53  YQLQEKLQSSLN------GLRKYQMHFTLACPRLPPARTTS-LVVLVPLIVFCAKCIIGA 112
           + L+E LQ SLN        + + M  T     LP A+TT   +V+VPLI FC +C+IGA
Sbjct: 162 FDLKETLQHSLNIFYGPLDKKYFVMEITHG---LPQAKTTGYFLVVVPLIAFCIRCMIGA 221

Query: 113 SYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ-- 172
            + R+ G S  +     +G     +S  W+SALR+I E D LDS S   +  P EEQ   
Sbjct: 222 FHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEED-LDSGSRPRTNDPVEEQDQA 281

Query: 173 ---ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGA 200
              IS E+ SH YRKL+ DY+KFLSECG+SKWGYWRGG+
Sbjct: 282 QPLISFEESSHVYRKLEDDYEKFLSECGMSKWGYWRGGS 316

[Close]
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match: A0A061FR65_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036188 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.7e-22
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 1 

Query: 85  TTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIREL 144
           T   +VLVPLI FC +CII     RV    R + V + +G     +S  W+SAL +  E 
Sbjct: 102 TGYFLVLVPLIAFCIRCIISTFRIRVARDMRHQAVDKSKGHHPGAKSMRWKSALSDTEES 161

Query: 145 DGLDSESSIYSTSPSEEQQ-ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGA 200
           D  DSES + S SPSE++  IS ++ SHAY +L  DY+KFLSECG+SKWGYWRGG+
Sbjct: 162 DAFDSESGLDSNSPSEDEAYISYDEASHAYSRLQHDYEKFLSECGMSKWGYWRGGS 217

[Close]
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match: gi|659119394|ref|XP_008459633.1| (PREDICTED: uncharacterized protein LOC103498697 isoform X2 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 9.0e-62
Identity = 119/163 (73.01%), Postives = 140/163 (85.89%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R ++  RD +QL+EKLQ++LNGL+ Y+  F LA  RLPPARTTS +VLVPL++FC +CII
Sbjct: 117 RVVSKIRDAFQLEEKLQNALNGLQIYKKLFALASSRLPPARTTSFIVLVPLVIFCTRCII 176

Query: 104 GASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ 163
           GASYARVFGT +LK + + EGERH FRSGHWRSALR+IRELDGLD E+ I STSPSE++Q
Sbjct: 177 GASYARVFGTLKLKAINKQEGERHKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 236

Query: 164 ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           ISVEDLSHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 237 ISVEDLSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 278

[Close]
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match: gi|659119392|ref|XP_008459632.1| (PREDICTED: uncharacterized protein LOC103498697 isoform X1 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 119/171 (69.59%), Postives = 140/171 (81.87%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPP--------ARTTSLVVLVPLI 103
           R ++  RD +QL+EKLQ++LNGL+ Y+  F LA  RLPP        ARTTS +VLVPL+
Sbjct: 117 RVVSKIRDAFQLEEKLQNALNGLQIYKKLFALASSRLPPVNFFFSPEARTTSFIVLVPLV 176

Query: 104 VFCAKCIIGASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYS 163
           +FC +CIIGASYARVFGT +LK + + EGERH FRSGHWRSALR+IRELDGLD E+ I S
Sbjct: 177 IFCTRCIIGASYARVFGTLKLKAINKQEGERHKFRSGHWRSALRDIRELDGLDCEAPIDS 236

Query: 164 TSPSEEQQISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           TSPSE++QISVEDLSHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 237 TSPSEDEQISVEDLSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 286

[Close]
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match: gi|778707993|ref|XP_011656102.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X2 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 7.1e-59
Identity = 116/163 (71.17%), Postives = 136/163 (83.44%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGLR Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 118 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 177

Query: 104 GASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGER  FRSGHWRSALR+IRELDGLD E+ I STSPSE++Q
Sbjct: 178 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 237

Query: 164 ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           ISVE+LSHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 238 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 279

[Close]
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match: gi|778707989|ref|XP_011656101.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X1 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 7.1e-59
Identity = 116/163 (71.17%), Postives = 136/163 (83.44%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGLR Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 121 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 180

Query: 104 GASYARVFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGER  FRSGHWRSALR+IRELDGLD E+ I STSPSE++Q
Sbjct: 181 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 240

Query: 164 ISVEDLSHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           ISVE+LSHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 241 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 282

[Close]
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match: gi|778707996|ref|XP_011656104.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X3 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 2.1e-58
Identity = 115/157 (73.25%), Postives = 134/157 (85.35%), Query Frame = 1 

Query: 50  RDRYQLQEKLQSSLNGLRKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYAR 109
           R+ +QL+EKLQS+LNGLR Y+  F LA    PPARTTS +VLVPL++FCA+CIIGASYAR
Sbjct: 124 RNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCIIGASYAR 183

Query: 110 VFGTSRLKPVKEPEGERHNFRSGHWRSALREIRELDGLDSESSIYSTSPSEEQQISVEDL 169
            FGT +LK + + EGER  FRSGHWRSALR+IRELDGLD E+ I STSPSE++QISVE+L
Sbjct: 184 AFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQISVEEL 243

Query: 170 SHAYRKLDQDYDKFLSECGLSKWGYWRGGAQRRPGQE 207
           SHAY+KLDQDY+KFLSECGLSKWGYWRGG Q RP QE
Sbjct: 244 SHAYKKLDQDYEKFLSECGLSKWGYWRGGTQ-RPEQE 279

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g10700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g10700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSX5_CUCSA4.9e-5971.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650530 PE=4 SV=1[more]
A0A067DX20_CITSI5.2e-2446.54Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0248531mg PE=4 ... [more]
F6I444_VITVI1.2e-2343.90Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g02170 PE=4 SV=... [more]
V4TN61_9ROSI1.5e-2345.91Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021221mg PE=4 SV=1[more]
A0A061FR65_THECC3.7e-2250.00Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036188 PE... [more]
BLAST of Cp4.1LG02g10700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g10700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119394|ref|XP_008459633.1|9.0e-6273.01PREDICTED: uncharacterized protein LOC103498697 isoform X2 [Cucumis melo][more]
gi|659119392|ref|XP_008459632.1|1.4e-5969.59PREDICTED: uncharacterized protein LOC103498697 isoform X1 [Cucumis melo][more]
gi|778707993|ref|XP_011656102.1|7.1e-5971.17PREDICTED: uncharacterized protein LOC101208955 isoform X2 [Cucumis sativus][more]
gi|778707989|ref|XP_011656101.1|7.1e-5971.17PREDICTED: uncharacterized protein LOC101208955 isoform X1 [Cucumis sativus][more]
gi|778707996|ref|XP_011656104.1|2.1e-5873.25PREDICTED: uncharacterized protein LOC101208955 isoform X3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g10700.1Cp4.1LG02g10700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g10700CmaCh01G008420Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g10700CmoCh01G008850Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g10700Cla012497Watermelon (97103) v1cpewmB544
Cp4.1LG02g10700Csa5G650530Cucumber (Chinese Long) v2cpecuB579
Cp4.1LG02g10700MELO3C022199Melon (DHL92) v3.5.1cpemeB486
Cp4.1LG02g10700ClCG08G000630Watermelon (Charleston Gray)cpewcgB532
Cp4.1LG02g10700CSPI05G31170Wild cucumber (PI 183967)cpecpiB580
Cp4.1LG02g10700Lsi08G000500Bottle gourd (USVL1VR-Ls)cpelsiB479
Cp4.1LG02g10700MELO3C022199.2Melon (DHL92) v3.6.1cpemedB575
Cp4.1LG02g10700CsaV3_5G040230Cucumber (Chinese Long) v3cpecucB0717
Cp4.1LG02g10700CsGy5G030500Cucumber (Gy14) v2cgybcpeB672
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g10700Cucurbita pepo (Zucchini)cpecpeB462
Cp4.1LG02g10700Cucumber (Gy14) v1cgycpeB0629
Cp4.1LG02g10700Cucurbita maxima (Rimu)cmacpeB056
Cp4.1LG02g10700Cucurbita moschata (Rifu)cmocpeB025
Cp4.1LG02g10700Watermelon (Charleston Gray)cpewcgB534
Cp4.1LG02g10700Watermelon (97103) v1cpewmB547
Cp4.1LG02g10700Wax gourdcpewgoB0671