CmoCh01G008850 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G008850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr01 : 4833009 .. 4835530 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGTTTATGTAATTACACTAAAAGGGAAAAAGAAAACAAAAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTTGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGGTATTTCGCCATTCCCTTATCTCACAACCCATCACCGACACCCTTTTCTTTCTTTTTCTGAGAAATCTTACACAACTTGCTTCGCTTTTCTCCTTTTCCCTCCAATAGAAATTGGGCCAACGCCAAAGCATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGGTATGTTTCTCTCCATTCAAGTGCTTTTGCTTCTAATTACTCCAGCCCCATGTTTGAATTGATTCTATTACTTCTGGAATTGAATGCCTTTTCCAACCTTAACTCTAACACTGGTTGCTATAGGCTAAATTGTACTGCAAACTAGTTACTGAATGTTCAGATCCTCAAAAATTTCAAACCCCATATGAATTTCAACTCACTTTCCATGAGTTGGGTTCATAATTTCTAAATTCGGTTATGAAAGTATTGGTATTACTTGTAGAATTGACAAACTCACTTAACTTTTTGTTGATTCATTGCGTTCGTGAACTACATGTATGAGGAATTTTTGTATATATGGCCACAAGGGTCGAGTTCTAATTTCCATTTAGTTTAGAAGAAGATATCACATCAATGAAGTATTGAGTAATTAATCGTGTTTATCCTGATTAGCTTAGTGACAGTTTTATCAGTTCCAGAATGAATTACCATATAATCTATGCCTGTTCTTGGCTTCTTTCTTATGTCTTACATAATCACTGCAGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGTAAGTTTCTTTTTCTCACCAGATGCAGAGCTATATCTAATCTACACATATTTATACAAACTTATCTGTTCTCTTCTTTTTTCTTTGTCAGGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAATGTCACAACTTCAGAAGCGGCCATTGGAGGTCTGCTCTTCGAGAGATAAGGGAATTGAATGGTTTGGATTCTGAGTCCTCCATATATTCTACTGTAAGTAATGTAACTTTTTGGTCCTACTCTTACTGTAAGGAATGGTTTTACTTGCAATGTGAAACGGGAGGAGAATTGAGAACTGATAGAGTTGTTGAATTGTTGCTTTCATTTCTTTGAGTACCCAACTCCCCAAGGCTTTTCCAGCTGATCATTCATTTTTGTCCATTCCTAATGGAGTTCTCTGGCCATCCACTTCGCTTTCTTCTTGTTTGCCCATCTTTTTGTTCCAATCAGTGTTATAATGCTGCCAAAATGGCAAACTATCTTCAGATAACAACACTGGATCTGCACATGGGTGGGGTGAACAAGAAAAGGAACAATGCAGAAATATGTTACTAACTAAGAGTGTTTAAATGAACTTCATAACTTATAAAAATACATCATATGTCGAAATCATTATAGAAAATATGCTTGATTTCTAAACAATACCCTTAAAAATCATTCTATACTCATTGTAGTTCTTTTGCAGAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTATTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTTTCTGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGCAACCATTTTTCTGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAACTCTTGACAAAGAACGTGCATGACCGGAGTCTCGCCGGGATTCTCAGTCACTTTGAGCTTTGCATCGGCGAACTCATCCACTTCCTCCTCCCCCCGCCATGGAGCTGAAGATGCCAACTGCTTCTTCTTCGCCATTTTTCCGCCCAGCCCAAGTTCCTCATGACAGCCGTAAGAGGCCTCAGTTTATAGGGCCCCCATTGTTGATACTCTTGAGTTTACTGCACAGACCCATTAAAATTCACTGAGATTTAGTCGGCCATCCAAAAATGAGAGCAGTGTTGGTTTCTAGAAGCATTAGATCGTTTTACAGTGTTGATAAGGATGTAACTGGGAAGTCGAATTGAAGAGCATGTTCTTTTCTTTGTGGTTTTGATCTCTTTGAGCCAACCCCAACAGGTTTCTAATAATTCTATCGAAATTTAGTTAGTCCACGTAGAGACCATCTGTC

mRNA sequence

CCTGTTTATGTAATTACACTAAAAGGGAAAAAGAAAACAAAAATAGGCAATAGGCATGGCGAAATTTGAAGGGTTTGTGCGATGGAAGTGAAGGTTGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGCATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAATGTCACAACTTCAGAAGCGGCCATTGGAGGTCTGCTCTTCGAGAGATAAGGGAATTGAATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTATTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAGGCAATCTTTGCAGCACTTTTCTGTGCTCCCTTGCCATCCAAAAGGGGCTAGGCTAGGGAGTTCTTTGTAGCAACCATTTTTCTGGTGTTGTATTGTAGTGGAGTAAAAATTTCAACCCAGTAATGTAATTAAACTTTAAATTGGACAAAATTTATGCATTCTGCATCCAATTTGCTACAACTCTTGACAAAGAACGTGCATGACCGGAGTCTCGCCGGGATTCTCAGTCACTTTGAGCTTTGCATCGGCGAACTCATCCACTTCCTCCTCCCCCCGCCATGGAGCTGAAGATGCCAACTGCTTCTTCTTCGCCATTTTTCCGCCCAGCCCAAGTTCCTCATGACAGCCGTAAGAGGCCTCAGTTTATAGGGCCCCCATTGTTGATACTCTTGAGTTTACTGCACAGACCCATTAAAATTCACTGAGATTTAGTCGGCCATCCAAAAATGAGAGCAGTGTTGGTTTCTAGAAGCATTAGATCGTTTTACAGTGTTGATAAGGATGTAACTGGGAAGTCGAATTGAAGAGCATGTTCTTTTCTTTGTGGTTTTGATCTCTTTGAGCCAACCCCAACAGGTTTCTAATAATTCTATCGAAATTTAGTTAGTCCACGTAGAGACCATCTGTC

Coding sequence (CDS)

ATGGAAGTGAAGGTTGGGCAGAGAAATGGAGTAGACCGTTCTCCTCTTCTCCCACAACCAATTCTCCCTTCTCTTCTAACTCCTCACAGAAATTGGGCCAACGCCAAAGCATCCTTGAAGAATCAATTCAGAGCCATTGCGCTGTTTAGAGATAGATATCAATTGCAAGAAAAGCTTCAGAGTTCTTTGAATGGACTTTGTAAATATCAAATGCATTTCACGCTTGCCTGCCCCCGACTACCTCCTGCTAGAACCACTAGTTTGGTAGTTTTGGTTCCCCTCATAGTATTTTGTGCCAAATGCATAATTGGTGCCTCTTATGCTAGAGTTTTCGGAACGTCGAGGCTTAAACCCGTTAAGGAACCAGAGGGAGAATGTCACAACTTCAGAAGCGGCCATTGGAGGTCTGCTCTTCGAGAGATAAGGGAATTGAATGGTTTGGATTCTGAGTCCTCCATATATTCTACTAGCCCTTCAGAAGAACAACAGATCTCAGTTGAAGATTTGTCACATGCTTACAAAAAACTGGATCAGGATTACGACAAATTTCTATCAGAATGTGGACTGAGTAAATCGGGCTATTGGCGAGGAGGTGCGCAGAGACCTGGACAGGAATAG
Homology
[Close]
BLAST of CmoCh01G008850 vs. TrEMBL
Match: A0A0A0KSX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650530 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.6e-57
Identity = 113/162 (69.75%), Postives = 133/162 (82.10%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGL  Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 118 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 177

Query: 104 GASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGE   FRSGHWRSALR+IREL+GLD E+ I STSPSE++Q
Sbjct: 178 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 237

Query: 164 ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           ISVE+LSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 238 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 279

[Close]
BLAST of CmoCh01G008850 vs. TrEMBL
Match: F6I444_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g02170 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 1 

Query: 85  TTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIREL 144
           T   +VLVPLI FC +CIIGA   RV G  R + V E E + H  +S  W+SAL +IRE 
Sbjct: 162 TGYFLVLVPLIAFCIRCIIGAFQNRVVGDLRHQAVNESEVDYHGSKSVRWKSALDDIREP 221

Query: 145 NGLDSESSIYSTSPSEEQ-QISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGA 200
           + LD+     S +PSE Q Q S E++SHAY KL+ DY +FLSECG+SK GYWRGG+
Sbjct: 222 DTLDTGLQPDSINPSEVQTQGSAEEVSHAYGKLEHDYQQFLSECGISKWGYWRGGS 277

[Close]
BLAST of CmoCh01G008850 vs. TrEMBL
Match: A0A067DX20_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0248531mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 74/174 (42.53%), Postives = 101/174 (58.05%), Query Frame = 1 

Query: 38  SLKNQFRAIALFRDR---YQLQEKLQSSLN---GLCKYQMHFTLACPRLPPARTTS-LVV 97
           S++   R   ++R+R   + L+E LQ SLN   G    +         LP A+TT   +V
Sbjct: 32  SMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLV 91

Query: 98  LVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSE 157
           +VPLI FC +C+IGA + R+ G S  +     +G     +S  W+SALR+I E   LDS 
Sbjct: 92  VVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIE-EDLDSG 151

Query: 158 SSIYSTSPSEEQQ-----ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGA 200
           S   +  P EEQ      IS E+ SHAY+KL+ DY+KFLSECG+SK GYWRGG+
Sbjct: 152 SRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGS 204

[Close]
BLAST of CmoCh01G008850 vs. TrEMBL
Match: V4TN61_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021221mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-21
Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = 1 

Query: 38  SLKNQFRAIALFRDR---YQLQEKLQSSLN---GLCKYQMHFTLACPRLPPARTTS-LVV 97
           S++   R   ++R+R   + L+E LQ SLN   G    +         LP A+TT   +V
Sbjct: 144 SMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLV 203

Query: 98  LVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSE 157
           +VPLI FC +C+IGA + R+ G S  +     +G     +S  W+SALR+I E   LDS 
Sbjct: 204 VVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIE-EDLDSG 263

Query: 158 SSIYSTSPSEEQQ-----ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGA 200
           S   +  P EEQ      IS E+ SH Y+KL+ DY+KFLSECG+SK GYWRGG+
Sbjct: 264 SRPRTNDPVEEQDQAQPLISFEESSHVYRKLEDDYEKFLSECGMSKWGYWRGGS 316

[Close]
BLAST of CmoCh01G008850 vs. TrEMBL
Match: A0A061FR65_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036188 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 1 

Query: 85  TTSLVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIREL 144
           T   +VLVPLI FC +CII     RV    R + V + +G     +S  W+SAL +  E 
Sbjct: 102 TGYFLVLVPLIAFCIRCIISTFRIRVARDMRHQAVDKSKGHHPGAKSMRWKSALSDTEES 161

Query: 145 NGLDSESSIYSTSPSEEQQ-ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGA 200
           +  DSES + S SPSE++  IS ++ SHAY +L  DY+KFLSECG+SK GYWRGG+
Sbjct: 162 DAFDSESGLDSNSPSEDEAYISYDEASHAYSRLQHDYEKFLSECGMSKWGYWRGGS 217

[Close]
BLAST of CmoCh01G008850 vs. TAIR10
Match: AT4G09970.1 (AT4G09970.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-07
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 88  LVVLVPLIVFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRE---L 147
           L  L+P++ FC  CIIG  +  +   SR    K  +G  H+  S  WR+AL +  E    
Sbjct: 152 LTSLLPVLGFCIICIIGTLHTII---SR----KTSQG--HHHGSERWRTALMDWNEPLAS 211

Query: 148 NGLDSESSIYSTSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKS 193
           +G DS S  Y  + + ++  + ++++ AY +++ +Y +FL ECG+ +S
Sbjct: 212 DGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGVGES 250

[Close]
BLAST of CmoCh01G008850 vs. NCBI nr
Match: gi|659119394|ref|XP_008459633.1| (PREDICTED: uncharacterized protein LOC103498697 isoform X2 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 2.9e-60
Identity = 117/162 (72.22%), Postives = 137/162 (84.57%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R ++  RD +QL+EKLQ++LNGL  Y+  F LA  RLPPARTTS +VLVPL++FC +CII
Sbjct: 117 RVVSKIRDAFQLEEKLQNALNGLQIYKKLFALASSRLPPARTTSFIVLVPLVIFCTRCII 176

Query: 104 GASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQ 163
           GASYARVFGT +LK + + EGE H FRSGHWRSALR+IREL+GLD E+ I STSPSE++Q
Sbjct: 177 GASYARVFGTLKLKAINKQEGERHKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 236

Query: 164 ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           ISVEDLSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 237 ISVEDLSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 278

[Close]
BLAST of CmoCh01G008850 vs. NCBI nr
Match: gi|659119392|ref|XP_008459632.1| (PREDICTED: uncharacterized protein LOC103498697 isoform X1 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 4.6e-58
Identity = 117/170 (68.82%), Postives = 137/170 (80.59%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPP--------ARTTSLVVLVPLI 103
           R ++  RD +QL+EKLQ++LNGL  Y+  F LA  RLPP        ARTTS +VLVPL+
Sbjct: 117 RVVSKIRDAFQLEEKLQNALNGLQIYKKLFALASSRLPPVNFFFSPEARTTSFIVLVPLV 176

Query: 104 VFCAKCIIGASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYS 163
           +FC +CIIGASYARVFGT +LK + + EGE H FRSGHWRSALR+IREL+GLD E+ I S
Sbjct: 177 IFCTRCIIGASYARVFGTLKLKAINKQEGERHKFRSGHWRSALRDIRELDGLDCEAPIDS 236

Query: 164 TSPSEEQQISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           TSPSE++QISVEDLSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 237 TSPSEDEQISVEDLSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 286

[Close]
BLAST of CmoCh01G008850 vs. NCBI nr
Match: gi|778707993|ref|XP_011656102.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X2 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 6.6e-57
Identity = 113/162 (69.75%), Postives = 133/162 (82.10%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGL  Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 118 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 177

Query: 104 GASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGE   FRSGHWRSALR+IREL+GLD E+ I STSPSE++Q
Sbjct: 178 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 237

Query: 164 ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           ISVE+LSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 238 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 279

[Close]
BLAST of CmoCh01G008850 vs. NCBI nr
Match: gi|778707989|ref|XP_011656101.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X1 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 6.6e-57
Identity = 113/162 (69.75%), Postives = 133/162 (82.10%), Query Frame = 1 

Query: 44  RAIALFRDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCII 103
           R +   R+ +QL+EKLQS+LNGL  Y+  F LA    PPARTTS +VLVPL++FCA+CII
Sbjct: 121 REVRKIRNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCII 180

Query: 104 GASYARVFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQ 163
           GASYAR FGT +LK + + EGE   FRSGHWRSALR+IREL+GLD E+ I STSPSE++Q
Sbjct: 181 GASYARAFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ 240

Query: 164 ISVEDLSHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           ISVE+LSHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 241 ISVEELSHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 282

[Close]
BLAST of CmoCh01G008850 vs. NCBI nr
Match: gi|778707996|ref|XP_011656104.1| (PREDICTED: uncharacterized protein LOC101208955 isoform X3 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.5e-56
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 1 

Query: 50  RDRYQLQEKLQSSLNGLCKYQMHFTLACPRLPPARTTSLVVLVPLIVFCAKCIIGASYAR 109
           R+ +QL+EKLQS+LNGL  Y+  F LA    PPARTTS +VLVPL++FCA+CIIGASYAR
Sbjct: 124 RNAFQLEEKLQSALNGLRIYKKLFALASSHQPPARTTSFIVLVPLVIFCARCIIGASYAR 183

Query: 110 VFGTSRLKPVKEPEGECHNFRSGHWRSALREIRELNGLDSESSIYSTSPSEEQQISVEDL 169
            FGT +LK + + EGE   FRSGHWRSALR+IREL+GLD E+ I STSPSE++QISVE+L
Sbjct: 184 AFGTLKLKAIDKQEGERRKFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQISVEEL 243

Query: 170 SHAYKKLDQDYDKFLSECGLSKSGYWRGGAQRPGQE 206
           SHAYKKLDQDY+KFLSECGLSK GYWRGG QRP QE
Sbjct: 244 SHAYKKLDQDYEKFLSECGLSKWGYWRGGTQRPEQE 279

The following BLAST results are available for this feature:
BLAST of CmoCh01G008850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSX5_CUCSA4.6e-5769.75Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650530 PE=4 SV=1[more]
F6I444_VITVI1.1e-2153.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g02170 PE=4 SV=... [more]
A0A067DX20_CITSI2.4e-2142.53Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0248531mg PE=4 ... [more]
V4TN61_9ROSI6.9e-2141.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021221mg PE=4 SV=1[more]
A0A061FR65_THECC7.7e-2048.28Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036188 PE... [more]
BLAST of CmoCh01G008850 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09970.18.7e-0731.48 unknown protein[more]
BLAST of CmoCh01G008850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119394|ref|XP_008459633.1|2.9e-6072.22PREDICTED: uncharacterized protein LOC103498697 isoform X2 [Cucumis melo][more]
gi|659119392|ref|XP_008459632.1|4.6e-5868.82PREDICTED: uncharacterized protein LOC103498697 isoform X1 [Cucumis melo][more]
gi|778707993|ref|XP_011656102.1|6.6e-5769.75PREDICTED: uncharacterized protein LOC101208955 isoform X2 [Cucumis sativus][more]
gi|778707989|ref|XP_011656101.1|6.6e-5769.75PREDICTED: uncharacterized protein LOC101208955 isoform X1 [Cucumis sativus][more]
gi|778707996|ref|XP_011656104.1|2.5e-5671.79PREDICTED: uncharacterized protein LOC101208955 isoform X3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008850.1CmoCh01G008850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G008850CmaCh01G008420Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G008850Cla012497Watermelon (97103) v1cmowmB412
CmoCh01G008850ClCG08G000630Watermelon (Charleston Gray)cmowcgB429
CmoCh01G008850Cp4.1LG02g10700Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G008850Cla97C08G144970Watermelon (97103) v2cmowmbB482
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G008850Cucurbita maxima (Rimu)cmacmoB043
CmoCh01G008850Wild cucumber (PI 183967)cmocpiB476
CmoCh01G008850Cucumber (Chinese Long) v2cmocuB472
CmoCh01G008850Melon (DHL92) v3.5.1cmomeB375
CmoCh01G008850Watermelon (Charleston Gray)cmowcgB430
CmoCh01G008850Watermelon (97103) v1cmowmB411
CmoCh01G008850Cucurbita pepo (Zucchini)cmocpeB468
CmoCh01G008850Bottle gourd (USVL1VR-Ls)cmolsiB440
CmoCh01G008850Cucumber (Gy14) v2cgybcmoB611
CmoCh01G008850Melon (DHL92) v3.6.1cmomedB431
CmoCh01G008850Cucumber (Chinese Long) v3cmocucB0565
CmoCh01G008850Wax gourdcmowgoB0553
CmoCh01G008850Cucurbita moschata (Rifu)cmocmoB021
CmoCh01G008850Cucumber (Gy14) v1cgycmoB0661