Cp4.1LG02g03850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g03850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTRAF-type zinc finger domain-containing 1
LocationCp4.1LG02 : 2784718 .. 2788042 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTTTTCATTTAGGTAAATAGTGGGTGAGGTGGATCGTCTCCATTCGTGAAAGTCATTCACTCGATGAGAAGTAGTTGAATCGAAGTCGGTTGCTCTTTGTTCTCCAAGCGTTATCGATCCACGGCGACGAATTTCTAGGTAAATTTCGTTCGATTTCAGAATCTTATCATTTTCTGCTCCTTTTCCCCCCCTATTTGATCTCCTCGAATTTCTCTGCAGCGCTTCAGTTATCGTTTACCTAATTTTGACGGACCTTGTACAACGATCGCCTACGTTCTGTTCGTTCGTTCCGATGGCAGTTGCATCCGAAGCGACCACAAGCTTATGCAGTCACTGGTATTGTAATTCTGGATGGATCGATAACTTCTATGTTTACGGCAAAAAATTACTTGAAGATTTTTTTGCGATTTCAATTTCTCTTGATTCTGGTGTTGATTTTTTTGAATTGTGTCAATCGTGATTGTCTTTTGCGATTGTTTTGGATTTCGGTTTCTTTCTATCCATATGGTTAGAGATTCTTATCCAGTTTAGTCACGAATCTGCTGTGGAGAGTGGATCGTTGGTTTGTTAATTTAGAAAAGAAATATTAGGTCAGAAAGTGAATTGCGCTGAAGTTCGATCTTCTTCGTGATGATTTTTGTCACCTGATTCCGTTTCTAGAAGTTGTTCTTCTATAGTGACGATATGAACGATGATTGCTTTGTCTTCTCCATTCAGCGGCCGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGAGCGGAACCTAGAGAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTCCTGAACACCCATGCTTCTGTACGATGACTTATCCTTCAAACTTTGTTGATAACCATTTCTGAAATGCACTTCAAGGCTACTCTATGTTACTCTTCCGCTTTCTCTCTTAATTAGGTTTTTGTTCCAATTTGTTGCATTGTTTATACAGCTTCAATTATAACATTAAGCTTGAGGGTTATGATTCTGTATAGTTTAGGTTGTGGCTCTACGGTCTTTGGATAAGGATTAGTGGTAGTTCTTTGAATTATTGGAATTTCAAGTGTTTATGGCCTTGTATTTCGACAGGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTTACTTGCGAGTTTTGTGAGTTCCCATTGCCAGCAATAGATTTGGCCGAGCATCAAGTACGTTGACGGATTGTTACTTGCAAGTTAAACGAGAATTTCAATGGAGGTCTCAATGTAATAACTTACCTTTGTTGGTTCAAATGTATAGGAGGTTTGTGGTAACCGGACCGAGCTTTGTCATCTGTGTCGCCGATATATAAGACTGCGAGAAAGATATAGTCATGAGAATAATTGCGAGAATGTTGCAGCAGCAGATAATATAGCAGAGTCTTCCAGGTATATAGAATCAATTAATGTTTGATCAACTGATTGTTTAACTTGTATCAGTGTTTATTTGTTGCTTCTGCAATTACTTTTATACTAAATTTTTTGCTTGAACCCTTCAGTTTTGGCCTATCTAGGAAAAACGAAACTTGTTCGTTGCTATAGCGGAGTTCGACGGGTTGAATTTTTTTAGAAAACGAACGCATAGATCTTACTATAGACATCTATTAGTTTTGTTTTTCTAAACTAAATCTCTAATGCTTCGGGTAATAACAGTTTTGTTATCTGTTGAAGTTATTGTCTAGATAATGTCTTATTGTTCTATTAACTTCTGTAGGCTACGAAGTTCCAAGTTCTATACTTGAAACTTGCATTGTATTCGGAAACATCCCCTTGAACTTTTGTAAACTTAAAACTGTTAGGAATCACGAACCTCTACAATGGTATGATAATGTCCGCTCTATTAGCTCTCATGACTTTGCTTTTGGTTTTCCCAAAAAGACTCGTACCAATAGAGATAGTCTTCCTTACTTATAAACTCATGATCTTCTTCTTAGTTAGTCAACGTGGGATTACTCATCTCAATAATCCTCACCAAAAGCTTCATCAGTAAATGGAAGTGTCTTATCTCGTGGTAATGCACTCACCAACGCCATGTAATTTGCATATACTCCTCTCTTCCTTCTGCCCTATGGAGTTGGCTTCATCTAAAGGAATAAGTTAGAGCATTATTCCACGGTTAGAAATTTGTTATATGTGAGAAATTTATTGTATGTGAGAAATTTATTGCATTGTTCCATAGTTTGGTCTTTAGTGGTCGATAACAGTCGTGTGAATAATAAAGGATTTAGAGAGAACGAGTTCATAGATGTTATCTAAGTTATCTTGACAATCAAGTGTAGTAAGGTCAATCGGTTGTTTTGTGAGAATAGTCCAGGTTTGCGCAAGCTAGCCTGGACACTCACAGATATATAAAATAAGTATGTGAAATAGACCGGTACGACTTGCTACTTAAACCCGCAATTCTTCATTCACTTTCGTAACTTTTCTCCGTTCTTTTCTTCTTTTTGGAGGGCGGGAATGTGAATCGTTTAAATTCCTCTATTTCATTTATCATGTGACCACTTCAGCGATTTGATGAGCCAGTGTATGTAGACTTTTAGCTCGACATTTTCTCTATGTTTCATTGAATGATGAATTCCATTTACATTTAGGGATCACCATTCGTGTTAGTACGATCGAATGTGAAACACGTGATCTATGTTCATGGTTCTCGTATTCGAAATTCCGAATGTTCAATTTGTTATCTTCTTTCTAACAACATGTGAACTGTGTCTGAAGGGATGTGGGGTCAGCACCACCAGAAAGAGAAGAAGCTAGAGGTCGAGGCGCTCGAAGAAGACAGCCGCAGGAGTTTTCTACCCGACGCCTTATATTCACTATTGCAATAACAGGTATTGCCGTTCTATTAGGATCCTTATTTTTCCAGAAAAAGGGCGAGAACAATGTGGTACACTGATTGCTGGTGAGGTGAGGTAGGTTACCACAGATCCTCCTAGTCCACAGAGTGGAGAATATTCCATGTAAAAAAGGAAAAAGAAACCCTTCCATTTTTCTGTACCAAGAATATTATTAGACAACTACTGTAAACTCATAACATTTGGGCGGAGATTTCGATCCAACGGCTCTACTCCTTTGTTCTTAAGGCTATGTATGATGAGTTTGAATCTCTTCTCAAACTAATATTAAGAAAAATAATTATATTTTAAAAATTAATGCAACATTTATATTTTATTTTTAGAGAAAAATTATTAAATGTTGCTATTTTTGGGTTTAGAATATATTTTTCAGTCTCTG

mRNA sequence

ATTCTTTTCATTTAGGTAAATAGTGGGTGAGGTGGATCGTCTCCATTCGTGAAAGTCATTCACTCGATGAGAAGTAGTTGAATCGAAGTCGGTTGCTCTTTGTTCTCCAAGCGTTATCGATCCACGGCGACGAATTTCTAGCGCTTCAGTTATCGTTTACCTAATTTTGACGGACCTTGTACAACGATCGCCTACGTTCTGTTCGTTCGTTCCGATGGCAGTTGCATCCGAAGCGACCACAAGCTTATGCAGTCACTGCGGCCGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGAGCGGAACCTAGAGAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTCCTGAACACCCATGCTTCTGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTTACTTGCGAGTTTTGTGAGTTCCCATTGCCAGCAATAGATTTGGCCGAGCATCAAGAGGTTTGTGGTAACCGGACCGAGCTTTGTCATCTGTGTCGCCGATATATAAGACTGCGAGAAAGATATAGTCATGAGAATAATTGCGAGAATGTTGCAGCAGCAGATAATATAGCAGAGTCTTCCAGGGATGTGGGGTCAGCACCACCAGAAAGAGAAGAAGCTAGAGGTCGAGGCGCTCGAAGAAGACAGCCGCAGGAGTTTTCTACCCGACGCCTTATATTCACTATTGCAATAACAGGTATTGCCGTTCTATTAGGATCCTTATTTTTCCAGAAAAAGGGCGAGAACAATGTGGTACACTGATTGCTGGTGAGGTGAGGTAGGTTACCACAGATCCTCCTAGTCCACAGAGTGGAGAATATTCCATGTAAAAAAGGAAAAAGAAACCCTTCCATTTTTCTGTACCAAGAATATTATTAGACAACTACTGTAAACTCATAACATTTGGGCGGAGATTTCGATCCAACGGCTCTACTCCTTTGTTCTTAAGGCTATGTATGATGAGTTTGAATCTCTTCTCAAACTAATATTAAGAAAAATAATTATATTTTAAAAATTAATGCAACATTTATATTTTATTTTTAGAGAAAAATTATTAAATGTTGCTATTTTTGGGTTTAGAATATATTTTTCAGTCTCTG

Coding sequence (CDS)

ATGGCAGTTGCATCCGAAGCGACCACAAGCTTATGCAGTCACTGCGGCCGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGAGCGGAACCTAGAGAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTCCTGAACACCCATGCTTCTGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTTACTTGCGAGTTTTGTGAGTTCCCATTGCCAGCAATAGATTTGGCCGAGCATCAAGAGGTTTGTGGTAACCGGACCGAGCTTTGTCATCTGTGTCGCCGATATATAAGACTGCGAGAAAGATATAGTCATGAGAATAATTGCGAGAATGTTGCAGCAGCAGATAATATAGCAGAGTCTTCCAGGGATGTGGGGTCAGCACCACCAGAAAGAGAAGAAGCTAGAGGTCGAGGCGCTCGAAGAAGACAGCCGCAGGAGTTTTCTACCCGACGCCTTATATTCACTATTGCAATAACAGGTATTGCCGTTCTATTAGGATCCTTATTTTTCCAGAAAAAGGGCGAGAACAATGTGGTACACTGA

Protein sequence

MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQKKGENNVVH
Homology
[Close]
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.7e-24
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 9   TSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSE 68
           T LC +C ++IP  N  +H +HC+RN+  C IC +  PK   E H    H  V+C  C++
Sbjct: 10  TRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTCK-CNK 69

Query: 69  TMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRER 128
            +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +++ 
Sbjct: 70  KLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL 129

Query: 129 YSHENNC 136
            +H   C
Sbjct: 130 KTHPEVC 135

[Close]
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 1 

Query: 11  LCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSETM 70
           LC +C ++IP  N  +H +HC+RN+  C +C +  PK   + H    H  V+C  C++ +
Sbjct: 12  LCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTCK-CNKKL 71

Query: 71  ERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRERYS 130
           E+  L  H    CP R+  C+ C+  L  + L EH++ CG RTELC  C R + ++E  +
Sbjct: 72  EKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELQT 131

Query: 131 HENNCENVAAADNIAESSRDVGSAPPE 158
           H       A    + E  R   + PPE
Sbjct: 132 HP------AVCGRVEEEKRSEAAVPPE 151

[Close]
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-23
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1 

Query: 6   EATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSL 65
           +  + LC +C ++IP  N  +H +HC+RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+  L  H    CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 126

Query: 126 RERYSHENNCENVAAADNIAESSRDVGSAPPE 158
           +E  +H   C        + E  R   + PPE
Sbjct: 127 KELKTHPEVC------GRVEEEKRTEAAIPPE 151

[Close]
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-23
Identity = 45/127 (35.43%), Postives = 71/127 (55.91%), Query Frame = 1 

Query: 9   TSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSE 68
           T LC +C ++IP  N  +H +HC+RN+  C  C +  PK   E H    H  V+C  C++
Sbjct: 10  TRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTCK-CNK 69

Query: 69  TMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRER 128
            +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +++ 
Sbjct: 70  KLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL 129

Query: 129 YSHENNC 136
            +H   C
Sbjct: 130 KTHPEVC 135

[Close]
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-23
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1 

Query: 5   SEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCS 64
           ++  T LC +C ++IP  N  +H +HC+RN+  C +C +  PK   E H    H  V+C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTCK 65

Query: 65  LCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIR 124
            C++ +E+  L  H+   CP R+  C+ C+  L  + L +H++ CG RTELC  C R + 
Sbjct: 66  -CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVL 125

Query: 125 LRERYSHENNC 136
           +++  +H   C
Sbjct: 126 VKDLKTHPEVC 135

[Close]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match: A0A0A0LHP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-101
Identity = 181/207 (87.44%), Postives = 191/207 (92.27%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MAVASE TTS+C+HCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEHFLNTHA 
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNC+ +  ADNIAESSRDVG+AP    +AR RGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFF +K E+N VH
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match: A0A061FF34_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.1e-86
Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA+AS+ TT +C+HC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EHFLNTHA 
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
           RYIRLRERY+HE+ C  V  A+N+  SSRDV +A  ERE+    GA+RRQP E+S RRL+
Sbjct: 166 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAA--EREQ----GAQRRQPPEYSRRRLL 225

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFFQKK E + VH
Sbjct: 226 FTIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match: A0A061FEN2_THECC (TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.1e-86
Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA+AS+ TT +C+HC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EHFLNTHA 
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
           RYIRLRERY+HE+ C  V  A+N+  SSRDV +A  ERE+    GA+RRQP E+S RRL+
Sbjct: 121 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAA--EREQ----GAQRRQPPEYSRRRLL 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFFQKK E + VH
Sbjct: 181 FTIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match: E0CNS1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07860 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.0e-85
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA AS   TS+CSHC R IPSTNIDLH VHC RNLE+CK CGDMVPK+HAEEH+LNTHAS
Sbjct: 1   MATASNEATSICSHCDRSIPSTNIDLHYVHCSRNLERCKHCGDMVPKKHAEEHYLNTHAS 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMER+ILA+H+GENCPQRIVTCEFCEFPLPAIDL+EHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMEREILAVHRGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNC-----ENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFS 180
           RY+RLRER  HE NC     ++V   DN    SRD  +A  ERE+    G RRR PQEFS
Sbjct: 121 RYVRLRERNDHEANCNGVSYDSVGVPDNTVSPSRDARAA--EREQ----GGRRRPPQEFS 180

Query: 181 TRRLIFTIAITGIAVLLGSLFFQKKGENNVVH 208
            RR++FTIAITGIAV+LGSLFFQ+K EN  +H
Sbjct: 181 QRRVLFTIAITGIAVILGSLFFQRKTENTEMH 206

[Close]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match: B9GN75_POPTR (TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_0002s11050g PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.0e-85
Identity = 153/207 (73.91%), Postives = 176/207 (85.02%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MAVASE +TS+CSHC R IPS+NIDLH  HC RNL+KCKICGDMVPK+HAEEHFLNTHA 
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILA+HKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCH+C 
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
           +YIRLRERY+HE+ C  +   D   ESSRDV +A    E  + +G +RRQPQ+FS +RL+
Sbjct: 121 KYIRLRERYNHESRCTGL--PDTTVESSRDVRAA----ERRQPQGPQRRQPQDFSRKRLL 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGS  FQKK E++ VH
Sbjct: 181 FTIAITGIAVLLGSFLFQKKTEDSQVH 201

[Close]
BLAST of Cp4.1LG02g03850 vs. TAIR10
Match: AT1G09920.1 (AT1G09920.1 TRAF-type zinc finger-related)

HSP 1 Score: 275.4 bits (703), Expect = 2.9e-74
Identity = 131/202 (64.85%), Postives = 151/202 (74.75%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           M  A+   T +C+HC RDIPS NIDLH VHC RNLEKCKICGDMVPK+HAEEH+LNTHA 
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           ++CS+C ET+ER+I   HKGE CP+RIVTCEFCEFPLPA+DLAEHQEVCGNRTELC+ C 
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
            Y+RLRERY+HE  C          ESSR +    P   E  G G RRR     S +RL 
Sbjct: 121 SYVRLRERYNHETKCPGT------VESSRRI----PRAAEGDGNGRRRRDGNGVSNKRLF 180

Query: 181 FTIAITGIAVLLGSLFFQKKGE 203
           FTIAITGIAV++GSLFFQ+K E
Sbjct: 181 FTIAITGIAVIIGSLFFQRKPE 192

[Close]
BLAST of Cp4.1LG02g03850 vs. TAIR10
Match: AT4G15420.1 (AT4G15420.1 Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-15
Identity = 45/160 (28.12%), Postives = 72/160 (45.00%), Query Frame = 1 

Query: 4   ASEATTSLCSHCGRDIPSTNIDLHSVHCER--------------------NLEKCKICGD 63
           +S+  T  C +C   IPS +I LH V+C R                    N   C+ CG 
Sbjct: 395 SSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGK 454

Query: 64  MVPKRHAEEHFLNTHASVSCSLCSETMERDILAIHKGENCPQRIVTCEFC----EFPLPA 123
            +     E+H    H  ++C  C   +E++ +  H+G++CP R++ C FC    E    A
Sbjct: 455 ALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSA 514

Query: 124 ID-------LAEHQEVCGNRTELCHLCRRYIRLRERYSHE 133
            D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct: 515 ADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

[Close]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match: gi|659132315|ref|XP_008466135.1| (PREDICTED: XIAP-associated factor 1 [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-102
Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MAVASE TTS+C+HCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEHFLNTHA 
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNC+ +  ADNIAESSRDVG+AP    +AR RGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFFQ+K E+N+VH
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

[Close]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match: gi|449436936|ref|XP_004136248.1| (PREDICTED: XIAP-associated factor 1 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 1.5e-101
Identity = 181/207 (87.44%), Postives = 191/207 (92.27%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MAVASE TTS+C+HCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEHFLNTHA 
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNC+ +  ADNIAESSRDVG+AP    +AR RGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFF +K E+N VH
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match: gi|590596278|ref|XP_007018293.1| (TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 324.7 bits (831), Expect = 1.2e-85
Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA+AS+ TT +C+HC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EHFLNTHA 
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
           RYIRLRERY+HE+ C  V  A+N+  SSRDV +A  ERE+    GA+RRQP E+S RRL+
Sbjct: 166 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAA--EREQ----GAQRRQPPEYSRRRLL 225

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFFQKK E + VH
Sbjct: 226 FTIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match: gi|590596282|ref|XP_007018294.1| (TRAF-type zinc finger-related isoform 2 [Theobroma cacao])

HSP 1 Score: 324.7 bits (831), Expect = 1.2e-85
Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA+AS+ TT +C+HC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EHFLNTHA 
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFSTRRLI 180
           RYIRLRERY+HE+ C  V  A+N+  SSRDV +A  ERE+    GA+RRQP E+S RRL+
Sbjct: 121 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAA--EREQ----GAQRRQPPEYSRRRLL 180

Query: 181 FTIAITGIAVLLGSLFFQKKGENNVVH 208
           FTIAITGIAVLLGSLFFQKK E + VH
Sbjct: 181 FTIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match: gi|731428762|ref|XP_010664441.1| (PREDICTED: XIAP-associated factor 1-like isoform X2 [Vitis vinifera])

HSP 1 Score: 322.4 bits (825), Expect = 5.8e-85
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 1 

Query: 1   MAVASEATTSLCSHCGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHAS 60
           MA AS   TS+CSHC R IPSTNIDLH VHC RNLE+CK CGDMVPK+HAEEH+LNTHAS
Sbjct: 1   MATASNEATSICSHCDRSIPSTNIDLHYVHCSRNLERCKHCGDMVPKKHAEEHYLNTHAS 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMER+ILA+H+GENCPQRIVTCEFCEFPLPAIDL+EHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMEREILAVHRGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNC-----ENVAAADNIAESSRDVGSAPPEREEARGRGARRRQPQEFS 180
           RY+RLRER  HE NC     ++V   DN    SRD  +A  ERE+    G RRR PQEFS
Sbjct: 121 RYVRLRERNDHEANCNGVSYDSVGVPDNTVSPSRDARAA--EREQ----GGRRRPPQEFS 180

Query: 181 TRRLIFTIAITGIAVLLGSLFFQKKGENNVVH 208
            RR++FTIAITGIAV+LGSLFFQ+K EN  +H
Sbjct: 181 QRRVLFTIAITGIAVILGSLFFQRKTENTEMH 206

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g03850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRAD1_MACFA5.7e-2436.22TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAF... [more]
TRAD1_RAT1.3e-2333.33TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1... [more]
TRAD1_MOUSE2.2e-2332.24TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1... [more]
TRAD1_HUMAN2.2e-2335.43TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1... [more]
TRAD1_BOVIN4.8e-2333.59TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 S... [more]
BLAST of Cp4.1LG02g03850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHP4_CUCSA1.1e-10187.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1[more]
A0A061FF34_THECC8.1e-8676.81TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao G... [more]
A0A061FEN2_THECC8.1e-8676.81TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV... [more]
E0CNS1_VITVI4.0e-8573.58Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07860 PE=4 SV=... [more]
B9GN75_POPTR9.0e-8573.91TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_000... [more]
BLAST of Cp4.1LG02g03850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09920.12.9e-7464.85 TRAF-type zinc finger-related[more]
AT4G15420.16.7e-1528.13 Ubiquitin fusion degradation UFD1 family protein[more]
BLAST of Cp4.1LG02g03850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132315|ref|XP_008466135.1|1.1e-10287.44PREDICTED: XIAP-associated factor 1 [Cucumis melo][more]
gi|449436936|ref|XP_004136248.1|1.5e-10187.44PREDICTED: XIAP-associated factor 1 [Cucumis sativus][more]
gi|590596278|ref|XP_007018293.1|1.2e-8576.81TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao][more]
gi|590596282|ref|XP_007018294.1|1.2e-8576.81TRAF-type zinc finger-related isoform 2 [Theobroma cacao][more]
gi|731428762|ref|XP_010664441.1|5.8e-8573.58PREDICTED: XIAP-associated factor 1-like isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g03850.1Cp4.1LG02g03850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16295TRAF-TYPE ZINC FINGER PROTEIN-RELATEDcoord: 1..203
score: 3.4E