CmaCh09G005980 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G005980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTRAF-type zinc finger domain-containing 1
LocationCma_Chr09 : 2799326 .. 2802428 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTCTTTCTCTTTTGGTAAAGGGTGGGTGAGGTCTTCGTTCGTGAAACTCATTCACTTAATTACAAGTAGTTGAATCCAATCTGTCGGTCCTCGTTCTCGAAACGTTATCGATCCACGGCTACAATTTCTTGGTAATTTTCATTCAATCTCAGAGTCTTTCCATTTTATCCTCCTTTTTGATATCCTCAAATTTCTCTGCAGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCAAGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGGTATTGTAATTCTGGATGGATATATAGTTTTTTTTTTTTTCGGCAAGAGATCTCTTGATTGGAAATTTTATCGATTTCAATTTATTTTATTTCTGGCGCTGGCGTTGATTTTTGTTGATGTCTTTGTCAATCGCGGTTATTGTTTGTGATTGTTTCGGAATTTCGATTTATTCCCTTCAATTGTGTTTGAGATTAGATTGTTTTGGGGGATTGAACTCTCATACAATTTAGGCACAAATCTGCCAAGGCCGGATCGTTATTTTGTTTTTTTGATTTGGAAAAAGAACTGTTTGGTAAGAATTTGAATCGCCTGATTATCTTTTCTTCTTCGTGATGAATTTGTTATCTGATCCCTTTCCTAGCAGTTGTTCTTCTATTGTGATGATCTGGATGGTAAATGCTTTTATTTCTCCATTTACAGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTACGATGATTTTTCTTTCAAACTTAGTAAATACCATTGCATTCATATTCTATGGTGCATAAATGAAAGCATAACATTAAGCTTGAGGGTTATTATATTTTCTTTAGATTGCCTTGAGAAGATTCTGCAGCATACAAATTCTCTCTTAAGACTGTTTTGATAAGAATTAGTGGTACTATTAATTATTGGAATTTCAAGTGCTTATGACCTTATGTTTGGACAGGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGTATGACAAATATTGAATTTGTAGTTAAATGAGAATTTCAAAAGCGATCTCCATGTTATATACCTTTGTTGGTTCAAATGTACAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGTATTTCAACTTGCAATTCTTGAAAGTAATCTAATTATTCTATACTGATAACTGCTATCTCTCATTGAGCCCCATAGGATGTCAATTTTTGATGCTATATGCAGTTGGTAGTGCCTAGTTTAAGGTTCTGTATAGTTATCCCATGGCTATGGCTTTCTTCTTGTGGATATCGAAAACCATGGAAATTTTAGATACCCTCTTCCATGAATTTCTTTGCCCTCTCTTTTAATTATCATATATTGATGAATGTTGATCAATTGGTTATTTAATCTGTCTTAGTATTTATTTGTTACTTCTATAAATACATTTTGAAATTAAAAATCTGAACTTTTCAGTCTCAGTCTTCACTCATCAAGGAAAAACCAAACTTTTTCACTACTATAGATGTAACCGCCCGTTTCTTTCTAGGCTTCCCCTCAAGGTTTTAAAACGCATCTATTAGGGAAATGTTTCCATACCCTTATAAGGAATGTATCGTTCCCCTCTCCAACCGATGAGGGATCTCACAATCCACCCCCTTTGGGGACTAGTGTCCTCGCTGAGACACCGGCCGATGTCTGGATTGGATACCATTTGTAACAGCCTAAGCCCACTGCTAGTAGATATTGTCCTATTTGTACTTCCTCTCCTGGGCTTTTTCTCAAGGTTTTTAAAACGTGTCTACTAGGTAAAGGTTTCCACACTCTTATAAGAAATGCTTCGTTCTCCTCTCCAAACGATATGGGATCTCACCATAGCTGAGCTCCATGGATTCAAGTGCTAAAGTCTGAAACTTGCATTGTATTTTAAAACATCTCCCTGGTCTTTTGTAAACTTAAAACTTTGGCAATAAATGAGTCTTGATGGTATTGTACACATGAGTGCCCTGTAATTTGCGCGTTCTTTGTTCTTCCTTCTCAACGGAATGACGAAAATGTGTGTGTGCTGCCATAGGGTTAGCTTCCAATTTATCAGTAGGGTCGATTAGGAATATACCAGATCGAATGAATTTATAGTATGTGGGAATGATGCCTGGTACAACTTGGAACTCAACCCTCAGTTCTTTACTCACGTTCATAACTTTTCTTATTCTATATGTTCAGTTTGTTATCTTCTAATAACGTGCAATCACTCTAAACTGTATCTGAAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCACAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTGGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTCCTTGCGATTTTTTACTTTACTATTTGTTGGTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTAAAGAGATAAATATAATTGTTCCTAAAATTGCTACTTTTTAAATGTCAAGAATTTAGAATCTGCCACTGTCAGAACTTTTTTTTT

mRNA sequence

ATTTTTCTTTCTCTTTTGGTAAAGGGTGGGTGAGGTCTTCGTTCGTGAAACTCATTCACTTAATTACAAGTAGTTGAATCCAATCTGTCGGTCCTCGTTCTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCAAGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCACAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTGGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTCCTTGCGATTTTTTACTTTACTATTTGTTGGTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTAAAGAGATAAATATAATTGTTCCTAAAATTGCTACTTTTTAAATGTCAAGAATTTAGAATCTGCCACTGTCAGAACTTTTTTTTT

Coding sequence (CDS)

ATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGGCAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGAGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCGTTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAACGATATAGCCATGAAAATAATTGCAAGGGTGTCGCAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGA

Protein sequence

MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQRKAESNIMH
Homology
[Close]
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.4e-24
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ T +C++C ++IP  N  +H +HC RN+  C IC +  PK   E H    H  V+C  
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 126

Query: 126 RERYSHENNC 136
           ++  +H   C
Sbjct: 127 KDLKTHPEVC 135

[Close]
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 1 

Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ T +C++C ++IP  N  +H +HC RN+  C  C +  PK   E H    H  V+C  
Sbjct: 7   DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+ +L  H+   CP R+  C+ C+  L  + L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 126

Query: 126 RERYSHENNC 136
           ++  +H   C
Sbjct: 127 KDLKTHPEVC 135

[Close]
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-23
Identity = 43/131 (32.82%), Postives = 74/131 (56.49%), Query Frame = 1 

Query: 5   SEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCS 64
           +++ T +C++C ++IP  N  +H +HC RN+  C +C +  PK   E H    H  V+C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTCK 65

Query: 65  LCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIR 124
            C++ +E+  L  H+   CP R+  C+ C+  L  + L +H++ CG RTELC  C R + 
Sbjct: 66  -CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVL 125

Query: 125 LRERYSHENNC 136
           +++  +H   C
Sbjct: 126 VKDLKTHPEVC 135

[Close]
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1 

Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++   +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 126

Query: 126 RERYSHENNCKGVAAADTVAESSRDVGAAP 156
           +E  +H       A    V E  R   A P
Sbjct: 127 KELQTHP------AVCGRVEEEKRSEAAVP 149

[Close]
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 1 

Query: 6   EETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ + +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRL 125
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH++ CG RTELC  C R + +
Sbjct: 67  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLV 126

Query: 126 RERYSHENNCKGVAAADTVAESSRDVGAAP 156
           +E  +H   C        V E  R   A P
Sbjct: 127 KELKTHPEVC------GRVEEEKRTEAAIP 149

[Close]
BLAST of CmaCh09G005980 vs. TrEMBL
Match: A0A0A0LHP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]
BLAST of CmaCh09G005980 vs. TrEMBL
Match: A0A061FF34_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]
BLAST of CmaCh09G005980 vs. TrEMBL
Match: A0A061FEN2_THECC (TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]
BLAST of CmaCh09G005980 vs. TrEMBL
Match: B9GN75_POPTR (TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_0002s11050g PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.6e-88
Identity = 156/206 (75.73%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEE+TSIC+HC R IPS+NIDLH  HC RNL+KCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILA+HKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCH+C 
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           +YIRLRERY+HE+ C G+   DT  ESSRDV AA  R   + +G +RRQPQ+FS +RL+F
Sbjct: 121 KYIRLRERYNHESRCTGL--PDTTVESSRDVRAAERR---QPQGPQRRQPQDFSRKRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS  FQ+K E + +H
Sbjct: 181 TIAITGIAVLLGSFLFQKKTEDSQVH 201

[Close]
BLAST of CmaCh09G005980 vs. TrEMBL
Match: B9SMY2_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0482610 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-86
Identity = 153/206 (74.27%), Postives = 176/206 (85.44%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETT++CNHC R IPS N DLHSVHC+RNLEKCK+CGDM+PK+H +EH+ NTHAP
Sbjct: 1   MAVASEETTTMCNHCNRAIPSLNYDLHSVHCSRNLEKCKVCGDMIPKKHYDEHFSNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER++LAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREVLAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE  C GV   + +  +SRDV AA      R +GA RR PQ++S RRL+F
Sbjct: 121 RYIRLRERYNHEIRCTGV--TNNIVGTSRDVRAAE-----RPQGAPRRPPQDYSRRRLMF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAV+LGSL FQRK E+N +H
Sbjct: 181 TIAITGIAVILGSLLFQRKTENNPVH 199

[Close]
BLAST of CmaCh09G005980 vs. TAIR10
Match: AT1G09920.1 (AT1G09920.1 TRAF-type zinc finger-related)

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-79
Identity = 139/201 (69.15%), Postives = 155/201 (77.11%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           M  A+ E T +CNHC RDIPS NIDLH VHCARNLEKCKICGDMVPK+HAEEHYLNTHAP
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           ++CS+C ET+ER+I   HKGE CP+RIVTCEFCEFPLPAVDLAEHQEVCGNRTELC+ C 
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
            Y+RLRERY+HE  C G        ESSR +  A E D     G RRR     S +RL F
Sbjct: 121 SYVRLRERYNHETKCPG------TVESSRRIPRAAEGD---GNGRRRRDGNGVSNKRLFF 180

Query: 181 TIAITGIAVLLGSLFFQRKAE 202
           TIAITGIAV++GSLFFQRK E
Sbjct: 181 TIAITGIAVIIGSLFFQRKPE 192

[Close]
BLAST of CmaCh09G005980 vs. TAIR10
Match: AT4G15420.1 (AT4G15420.1 Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 1 

Query: 4   ASEETTSICNHCGRDIPSANIDLHSVHCAR--------------------NLEKCKICGD 63
           +S+  T  C +C   IPS +I LH V+C+R                    N   C+ CG 
Sbjct: 395 SSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGK 454

Query: 64  MVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFC----EFPLPA 123
            +     E+H    H P++C  C   +E++ +  H+G++CP R++ C FC    E    A
Sbjct: 455 ALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSA 514

Query: 124 VD-------LAEHQEVCGNRTELCHLCRRYIRLRERYSHE 133
            D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct: 515 ADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

[Close]
BLAST of CmaCh09G005980 vs. NCBI nr
Match: gi|659132315|ref|XP_008466135.1| (PREDICTED: XIAP-associated factor 1 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 2.8e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

[Close]
BLAST of CmaCh09G005980 vs. NCBI nr
Match: gi|449436936|ref|XP_004136248.1| (PREDICTED: XIAP-associated factor 1 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

[Close]
BLAST of CmaCh09G005980 vs. NCBI nr
Match: gi|590596282|ref|XP_007018294.1| (TRAF-type zinc finger-related isoform 2 [Theobroma cacao])

HSP 1 Score: 334.0 bits (855), Expect = 1.9e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]
BLAST of CmaCh09G005980 vs. NCBI nr
Match: gi|590596278|ref|XP_007018293.1| (TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 334.0 bits (855), Expect = 1.9e-88
Identity = 158/206 (76.70%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GVA       SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGVAEN---VGSSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]
BLAST of CmaCh09G005980 vs. NCBI nr
Match: gi|743802897|ref|XP_011016985.1| (PREDICTED: XIAP-associated factor 1 [Populus euphratica])

HSP 1 Score: 332.8 bits (852), Expect = 4.3e-88
Identity = 158/206 (76.70%), Postives = 178/206 (86.41%), Query Frame = 1 

Query: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEE+TSIC+HC R IPS+NIDLH  HC RNL+KCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILA+HKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCH+C 
Sbjct: 61  VACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHMCN 120

Query: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C G+   DT  ESSRDV AA  R   +  G +RRQPQEFS +RL+F
Sbjct: 121 RYIRLRERYNHESRCTGL--PDTTVESSRDVRAAERR---QPPGPQRRQPQEFSRKRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS  FQ+K E + +H
Sbjct: 181 TIAITGIAVLLGSFLFQKKTEDSQVH 201

The following BLAST results are available for this feature:
BLAST of CmaCh09G005980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRAD1_MACFA7.4e-2434.62TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAF... [more]
TRAD1_HUMAN2.8e-2333.85TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1... [more]
TRAD1_BOVIN6.3e-2332.82TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 S... [more]
TRAD1_RAT1.1e-2232.67TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1... [more]
TRAD1_MOUSE1.4e-2232.67TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1... [more]
BLAST of CmaCh09G005980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHP4_CUCSA1.7e-10791.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G892780 PE=4 SV=1[more]
A0A061FF34_THECC1.3e-8876.70TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao G... [more]
A0A061FEN2_THECC1.3e-8876.70TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao GN=TCM_034548 PE=4 SV... [more]
B9GN75_POPTR6.6e-8875.73TRAF-type zinc finger-related family protein OS=Populus trichocarpa GN=POPTR_000... [more]
B9SMY2_RICCO2.1e-8674.27Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0482610 PE=4 ... [more]
BLAST of CmaCh09G005980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09920.16.6e-7969.15 TRAF-type zinc finger-related[more]
AT4G15420.13.5e-1628.75 Ubiquitin fusion degradation UFD1 family protein[more]
BLAST of CmaCh09G005980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132315|ref|XP_008466135.1|2.8e-10891.79PREDICTED: XIAP-associated factor 1 [Cucumis melo][more]
gi|449436936|ref|XP_004136248.1|2.4e-10791.79PREDICTED: XIAP-associated factor 1 [Cucumis sativus][more]
gi|590596282|ref|XP_007018294.1|1.9e-8876.70TRAF-type zinc finger-related isoform 2 [Theobroma cacao][more]
gi|590596278|ref|XP_007018293.1|1.9e-8876.70TRAF-type zinc finger domain-containing protein 1 isoform 1 [Theobroma cacao][more]
gi|743802897|ref|XP_011016985.1|4.3e-8876.70PREDICTED: XIAP-associated factor 1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G005980.1CmaCh09G005980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16295TRAF-TYPE ZINC FINGER PROTEIN-RELATEDcoord: 1..204
score: 7.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G005980Cucsa.312100Cucumber (Gy14) v1cgycmaB0854
CmaCh09G005980Cla023074Watermelon (97103) v1cmawmB036
CmaCh09G005980Csa3G892780Cucumber (Chinese Long) v2cmacuB014
CmaCh09G005980MELO3C003503Melon (DHL92) v3.5.1cmameB034
CmaCh09G005980ClCG11G014720Watermelon (Charleston Gray)cmawcgB014
CmaCh09G005980CSPI03G45690Wild cucumber (PI 183967)cmacpiB014
CmaCh09G005980CmoCh01G015230Cucurbita moschata (Rifu)cmacmoB049
CmaCh09G005980CmoCh09G005860Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G005980Lsi04G022900Bottle gourd (USVL1VR-Ls)cmalsiB022
CmaCh09G005980Cp4.1LG02g03850Cucurbita pepo (Zucchini)cmacpeB047
CmaCh09G005980Cp4.1LG06g04010Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G005980MELO3C003503.2Melon (DHL92) v3.6.1cmamedB033
CmaCh09G005980CsaV3_3G048130Cucumber (Chinese Long) v3cmacucB0021
CmaCh09G005980Cla97C11G220730Watermelon (97103) v2cmawmbB019
CmaCh09G005980Bhi09G002130Wax gourdcmawgoB0026
CmaCh09G005980CsGy3G043150Cucumber (Gy14) v2cgybcmaB285
CmaCh09G005980Carg00419Silver-seed gourdcarcmaB0934
CmaCh09G005980Carg03013Silver-seed gourdcarcmaB0889
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G005980Cucumber (Chinese Long) v3cmacucB0014
CmaCh09G005980Watermelon (97103) v2cmawmbB041
CmaCh09G005980Wax gourdcmawgoB0021
CmaCh09G005980Cucurbita maxima (Rimu)cmacmaB035
CmaCh09G005980Cucurbita maxima (Rimu)cmacmaB053
CmaCh09G005980Cucurbita moschata (Rifu)cmacmoB034
CmaCh09G005980Cucurbita moschata (Rifu)cmacmoB060
CmaCh09G005980Melon (DHL92) v3.5.1cmameB049
CmaCh09G005980Cucurbita pepo (Zucchini)cmacpeB029
CmaCh09G005980Cucurbita pepo (Zucchini)cmacpeB066
CmaCh09G005980Cucumber (Gy14) v2cgybcmaB146
CmaCh09G005980Cucumber (Gy14) v2cgybcmaB706
CmaCh09G005980Silver-seed gourdcarcmaB0071
CmaCh09G005980Silver-seed gourdcarcmaB1139