Carg03013 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03013
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TRAF-type zinc finger domain-containing 1
Location	Cucurbita_argyrosperma_scaffold_008 : 1343993 .. 1347155 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTGAATCCTGTGAACGAACATTTTCTTCTCTTGGTGAAGGTGGGTGAAGGTGGGTGAGGGTCTTCGTTCGTGAAACTCATTCACTTAATTAAAGTAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGGTAATTTTCATTCAATCTCAGAGTCTTTCCATTTTATCCTCCTTTTTGATCTCCTCAAATTTCTCTGCAGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCACGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGGTATTGTAATTCTGGACGGATGTATAGTTTTTTTTTTTTTTTTCGGCAAGAGATCTCTTGATTGGAAATTTTATTTCAATTTATTTTATTTCTGGCGTTGATTTTTGTTGATGTCTTTGTCAATCGCGATTATCGTTTGTGATTGTTTCGGAATTTCGATTTGTTCCTTTCAATTGTGTTTGAGATTTGATTGTTTTGGGGGATAGAACTCTCATCCAATTTAGGCACAAATCTGCCAAGGCAGGATCGTTATTTTGTTTTTTTGATTTGGAAAAAGAACTGTTTGGTAAGAATTTGAATCGCCTGATTATCTTTTCTTCTTCGTGATGAATTTTTATCTGATCCCTTTCCTAGCAGTTGTTCTTCTATTGTGATGATCTGGATGGTAAATGCTTTTATTTCTCCATTTACAGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTACGATGATTTTTCTTTCAAACTTAGTAAATACCATGGCATTCATATTCTATAGTGCATAAATGAAAGCATAACATTAAGCTTGAGGGTTATTATATTTTCTTTAGATTGCCTTGAGAAGATTCTGCAGCATACAAATTCTCTCTTAAGACTGTTTTGATAAGAATTAGTGGTACTACTCTTAATTTTTGGAATTTCAAGTGCTTATGACCTTATGTTTGGACAGGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGTATGACAAATATTGAATTTTTAGTTAAATGAAAATTTCAAAAGCGATCTCCATGTTATACCTTTGTTGGTTCAAATTTGCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGTATTTCAACTTGCAATTCTTGAAAGTATTCAACATATTCTATACTGATAACTGCTATCTCTCATTGAGCCCCATAGGATGTCGATTTTTGATGCTATATGCAGTTGGTAGTGCTTAGTTTAAGGTTCTGTATAGTTATCCCATGGCTATGGCTTTCTTCTTGTGGATATCGAAAACCATGGAAATTTTAGATACCCTCTTCCATGGATTTCTATGCCCTCTCTTTTCATTATCATATATTAATTAATGTTGATCAATTGGTTATTTAATCTGTCTTAGTATTCATTTGTTACTTCTATAAATACATTTTGAAATTAAATATCTGAACTTTTCAGTCTCAATCTTCACTCATCAAGGAAAAACCAAACCTTTTCACAACTATAGATGTAACCTCCCTTTTCCTTCTAGGCTTCCCCTCAGGGTTTTAAAATGCCTCTATTAGAGGGAGGTTTCCACACCCTTATAAGTAATGTTTCGTTCCCCTCTCCAACCGATGTGGGTTCTTACAATCCACCCCCTTTGGGGACTAGCGTCCTCGCTGAGACACCTCCCGATATCTGGCTTTGATATCATTTGTAACAGCCTAAGCCTACTGTTAGCAGATATTGTCCTGTTTGTACTTTATCTTTTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTAGGTAAAGGTTTCCACACTCTTATAAGAAATGTTTCATTCCCCTCTCCAAACGATGTGGGATCTCACAAAAGATGAGTTCCATGGATTCAAGTGCTAAATCTGAAACTTGCACTTTATTTGAAAACATCTCCCTGGTCTTTTGTAAACTTAAACTTCGGCAATAAATGAGTCTTGATGGTATTGTACACGAGTGCCCTGTAATTTGCGTGTTCTTTGTTCTTCCTTCTTCTCAACGGAATGACGAAGGTTAGCATCGTTACATGGCACACCGATGTGCCTATGCTGCCATTAGGGTTAGCTTCCAATTTATACTGGGTCGGTTAGGAATATACCAGATCGAATGAACTTATAGTATGTGGGTATGATTCGTGGTACAACTTGGAACTCAACCCTCAGTTCTTTACTCACGTTCATAACTTTTCTTATTCTATATGTTCAGTTTGTTATCTTCTAATAACGTGCTTAATCATTCTAAACTGTATCTGAAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCATAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTCGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTTACAAATTTAATTCCTAGCGATTTTCTTTTTTTCTTTACTTTTCACTTTGTTATTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTCTTAAATGTCAAGAATTTAGAATCTGCCATTGTCAGAATTTTTTTTTTTTTTTTTTTATATAAGAATAATATATATTCT

mRNA sequence

CGCTGAATCCTGTGAACGAACATTTTCTTCTCTTGGTGAAGGTGGGTGAAGGTGGGTGAGGGTCTTCGTTCGTGAAACTCATTCACTTAATTAAAGTAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCACGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCATAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTCGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTTACAAATTTAATTCCTAGCGATTTTCTTTTTTTCTTTACTTTTCACTTTGTTATTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTCTTAAATGTCAAGAATAATTTTTTTTTTTTTTTTTTTATATAAGAATAATATATATTCT

Coding sequence (CDS)

ATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGA

Protein sequence

MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQRKAESNIMH

Homology

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BLAST of Carg03013 vs. NCBI nr
Match: XP_023534901.1 (XIAP-associated factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 3.8e-117
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNIMH
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIMH 206

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BLAST of Carg03013 vs. NCBI nr
Match: XP_022936676.1 (XIAP-associated factor 1-like [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 4.2e-116
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS NIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNI+H
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIVH 206

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BLAST of Carg03013 vs. NCBI nr
Match: XP_022975863.1 (XIAP-associated factor 1-like [Cucurbita maxima])

HSP 1 Score: 426.4 bits (1095), Expect = 5.5e-116
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS NIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGV AADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNIMH
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIMH 206

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BLAST of Carg03013 vs. NCBI nr
Match: XP_008466135.1 (PREDICTED: XIAP-associated factor 1 [Cucumis melo] >XP_008466136.1 PREDICTED: XIAP-associated factor 1 [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 4.2e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

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BLAST of Carg03013 vs. NCBI nr
Match: XP_004136248.1 (PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >XP_004136249.1 PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >KGN60277.1 hypothetical protein Csa_3G892780 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 3.6e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

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BLAST of Carg03013 vs. TAIR10
Match: AT1G09920.1 (TRAF-type zinc finger-related)

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-79
Identity = 139/201 (69.15%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           M  A+ E T +CNHC RDIPS NIDLH VHCARNLEKCKICGDMVPK+HAEEHYLNTHAP
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           ++CS+C ET+ER+I   HKGE CP+RIVTCEFCEFPLPAVDLAEHQEVCGNRTELC+ C 
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
            Y+RLRERY+HE  C G        ESSR +  A E D     G RRR     S +RL F
Sbjct: 121 SYVRLRERYNHETKCPG------TVESSRRIPRAAEGD---GNGRRRRDGNGVSNKRLFF 180

Query: 181 TIAITGIAVLLGSLFFQRKAE 202
           TIAITGIAV++GSLFFQRK E
Sbjct: 181 TIAITGIAVIIGSLFFQRKPE 192

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BLAST of Carg03013 vs. TAIR10
Match: AT4G15420.1 (Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 4   ASEETTSICNHCGRDIPSTNIDLHSVHC--------------------ARNLEKCKICGD 63
           +S+  T  C +C   IPS +I LH V+C                    A+N   C+ CG 
Sbjct: 395 SSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGK 454

Query: 64  MVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFC----EFPLPA 123
            +     E+H    H P++C  C   +E++ +  H+G++CP R++ C FC    E    A
Sbjct: 455 ALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSA 514

Query: 124 VD-------LAEHQEVCGNRTELCHLCRRYIRLRERYSHE 133
            D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct: 515 ADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

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BLAST of Carg03013 vs. Swiss-Prot
Match: sp|Q6GPH4|XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 46/149 (30.87%), Postives = 64/149 (42.95%), Query Frame = 0


Query: 10  SICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSET 69
           S+C +C R + S N  LH  +C R L  C  C + VPK   EEH    H  V C++C ++
Sbjct: 6   SVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQS 65

Query: 70  MERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERY 129
           M++  L  HK   C                         CG+RTELC  C ++I  R   
Sbjct: 66  MQKSSLEFHKANECXXXXXXXXXXXXXXXXXXXXXXXXYCGSRTELCQGCGQFIMHRMLA 125

Query: 130 SHENNCKGVTAADTVAESSRDVGAAPERD 159
            H + C+   A     E      +APER+
Sbjct: 126 QHRDVCRSEQAQLGKGERI----SAPERE 150

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BLAST of Carg03013 vs. Swiss-Prot
Match: sp|Q99MM4|TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-15
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 6   EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++   +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQ 107
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH+
Sbjct: 67  CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106

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BLAST of Carg03013 vs. Swiss-Prot
Match: sp|Q3UDK1|TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-15
Identity = 32/100 (32.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 6   EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ + +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEH 106
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH
Sbjct: 67  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEH 105

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BLAST of Carg03013 vs. Swiss-Prot
Match: sp|Q4R970|TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 6  EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
          ++ T +C++C ++IP  N  +H +HC RN+  C IC +  PK   E H    H  V+C  
Sbjct: 7  DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66 CSETMERDILAIHKGENCPQRIVTCEFCEFPL 98
          C++ +E+ +L  H+   CP R+  C+ C+  L
Sbjct: 67 CNKKLEKRLLKKHEETECPLRLAVCQHCDLEL 97

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BLAST of Carg03013 vs. Swiss-Prot
Match: sp|Q58D05|TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14
Identity = 31/98 (31.63%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 5   SEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCS 64
           +++ T +C++C ++IP  N  +H +HC RN+  C +C +  PK   E H    H  V+C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTCK 65

Query: 65  LCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDL 103
            C++ +E+  L  H+   CP R+  C+ C+  L  + L
Sbjct: 66  -CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKL 102

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BLAST of Carg03013 vs. TrEMBL
Match: tr|A0A1S3CRX9|A0A1S3CRX9_CUCME (XIAP-associated factor 1 OS=Cucumis melo OX=3656 GN=LOC103503642 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.8e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

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BLAST of Carg03013 vs. TrEMBL
Match: tr|A0A0A0LHP4|A0A0A0LHP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892780 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.4e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

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BLAST of Carg03013 vs. TrEMBL
Match: tr|A0A061FEN2|A0A061FEN2_THECC (TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88
Identity = 159/206 (77.18%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GV  A+ V  SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

[Close]

BLAST of Carg03013 vs. TrEMBL
Match: tr|A0A061FF34|A0A061FF34_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88
Identity = 159/206 (77.18%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GV  A+ V  SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]

BLAST of Carg03013 vs. TrEMBL
Match: tr|A0A251IR18|A0A251IR18_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G057500 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.1e-87
Identity = 159/206 (77.18%), Postives = 176/206 (85.44%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETT+IC+HC R IPS NIDLH  HC+RNLEKCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEETTNICSHCDRAIPSLNIDLHFAHCSRNLEKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE  C GV  +D+ A SSRDV AA      R  GA R QP ++S RRL+F
Sbjct: 121 RYIRLRERYNHEARCTGV--SDSTAGSSRDVRAAE-----RAPGAPRTQPHDYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS+ FQRK  +N +H
Sbjct: 181 TIAITGIAVLLGSILFQRKTGNNQVH 199

The following BLAST results are available for this feature:

BLAST of Carg03013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534901.1	3.8e-117	100.00	XIAP-associated factor 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936676.1	4.2e-116	99.03	XIAP-associated factor 1-like [Cucurbita moschata]	[more]
XP_022975863.1	5.5e-116	99.03	XIAP-associated factor 1-like [Cucurbita maxima]	[more]
XP_008466135.1	4.2e-108	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis melo] >XP_008466136.1 PREDICTED: XI...	[more]
XP_004136248.1	3.6e-107	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >XP_004136249.1 PREDICTED:...	[more]

BLAST of Carg03013 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09920.1	5.0e-79	69.15	TRAF-type zinc finger-related	[more]
AT4G15420.1	3.5e-16	28.75	Ubiquitin fusion degradation UFD1 family protein	[more]

BLAST of Carg03013 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6GPH4\|XAF1_HUMAN	7.5e-16	30.87	XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1	[more]
sp\|Q99MM4\|TRAD1_RAT	3.7e-15	31.68	TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 ...	[more]
sp\|Q3UDK1\|TRAD1_MOUSE	6.4e-15	32.00	TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tr...	[more]
sp\|Q4R970\|TRAD1_MACFA	1.4e-14	33.70	TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541...	[more]
sp\|Q58D05\|TRAD1_BOVIN	3.2e-14	31.63	TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD...	[more]

BLAST of Carg03013 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRX9\|A0A1S3CRX9_CUCME	2.8e-108	91.79	XIAP-associated factor 1 OS=Cucumis melo OX=3656 GN=LOC103503642 PE=4 SV=1	[more]
tr\|A0A0A0LHP4\|A0A0A0LHP4_CUCSA	2.4e-107	91.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892780 PE=4 SV=1	[more]
tr\|A0A061FEN2\|A0A061FEN2_THECC	1.9e-88	77.18	TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_034548...	[more]
tr\|A0A061FF34\|A0A061FF34_THECC	1.9e-88	77.18	TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao O...	[more]
tr\|A0A251IR18\|A0A251IR18_MANES	6.1e-87	77.18	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G057500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03013-RA	Carg03013-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 60..115 e-value: 5.8E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..169
None	No IPR available	PANTHER	PTHR16295	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	coord: 4..200
None	No IPR available	PANTHER	PTHR16295:SF23	SUBFAMILY NOT NAMED	coord: 4..200

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03013	Cla023074	Watermelon (97103) v1	carwmB0634
Carg03013	Csa3G892780	Cucumber (Chinese Long) v2	carcuB0655
Carg03013	MELO3C003503	Melon (DHL92) v3.5.1	carmeB0631
Carg03013	ClCG11G014720	Watermelon (Charleston Gray)	carwcgB0610
Carg03013	CSPI03G45690	Wild cucumber (PI 183967)	carcpiB0665
Carg03013	Cucsa.312100	Cucumber (Gy14) v1	carcgyB0712
Carg03013	CmaCh09G005980	Cucurbita maxima (Rimu)	carcmaB0889
Carg03013	CmoCh01G015230	Cucurbita moschata (Rifu)	carcmoB0873
Carg03013	CmoCh09G005860	Cucurbita moschata (Rifu)	carcmoB0865
Carg03013	Cp4.1LG02g03850	Cucurbita pepo (Zucchini)	carcpeB0899
Carg03013	Cp4.1LG06g04010	Cucurbita pepo (Zucchini)	carcpeB0906
Carg03013	CsGy3G043150	Cucumber (Gy14) v2	carcgybB0632
Carg03013	MELO3C003503.2	Melon (DHL92) v3.6.1	carmedB0640
Carg03013	CsaV3_3G048130	Cucumber (Chinese Long) v3	carcucB0666
Carg03013	Cla97C11G220730	Watermelon (97103) v2	carwmbB0656
Carg03013	Bhi09G002130	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03013	Carg00419	Silver-seed gourd	carcarB554

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03013	Watermelon (97103) v2	carwmbB0655
Carg03013	Wax gourd	carwgoB0751
Carg03013	Silver-seed gourd	carcarB066
Carg03013	Silver-seed gourd	carcarB424
Carg03013	Silver-seed gourd	carcarB557
Carg03013	Cucumber (Gy14) v1	carcgyB0706
Carg03013	Cucurbita maxima (Rimu)	carcmaB0892
Carg03013	Cucurbita maxima (Rimu)	carcmaB0897
Carg03013	Cucurbita maxima (Rimu)	carcmaB0900
Carg03013	Cucurbita moschata (Rifu)	carcmoB0868
Carg03013	Cucurbita moschata (Rifu)	carcmoB0877
Carg03013	Cucurbita pepo (Zucchini)	carcpeB0894
Carg03013	Cucurbita pepo (Zucchini)	carcpeB0907
Carg03013	Cucumber (Chinese Long) v2	carcuB0659
Carg03013	Cucumber (Chinese Long) v3	carcucB0670
Carg03013	Bottle gourd (USVL1VR-Ls)	carlsiB574
Carg03013	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg03013	Melon (DHL92) v3.5.1	carmeB0636
Carg03013	Melon (DHL92) v3.6.1	carmedB0645
Carg03013	Watermelon (97103) v1	carwmB0633