Cp4.1LG01g26310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g26310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 21260979 .. 21261215 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTGCCCTTGACCAACCACCTCCTTATCCGAGACGACATGTCGCCTGGCTCCATTCAGAAGGCAGCCTCCGACGCTGCCATGGCCGTCGATGCGCAGTATATATGTAACAGCTCGCCTGATCGGGGCAGCAGCGGCGGGACAGGGGCATTTCACGGATCAGGATACGAGAGTTATACTGCGATGAATGATCAAGATCGAGATCGAGATATTTCCATCGAAGATTATCTGTGA

mRNA sequence

ATGGTTCTGCCCTTGACCAACCACCTCCTTATCCGAGACGACATGTCGCCTGGCTCCATTCAGAAGGCAGCCTCCGACGCTGCCATGGCCGTCGATGCGCAGTATATATGTAACAGCTCGCCTGATCGGGGCAGCAGCGGCGGGACAGGGGCATTTCACGGATCAGGATACGAGAGTTATACTGCGATGAATGATCAAGATCGAGATCGAGATATTTCCATCGAAGATTATCTGTGA

Coding sequence (CDS)

ATGGTTCTGCCCTTGACCAACCACCTCCTTATCCGAGACGACATGTCGCCTGGCTCCATTCAGAAGGCAGCCTCCGACGCTGCCATGGCCGTCGATGCGCAGTATATATGTAACAGCTCGCCTGATCGGGGCAGCAGCGGCGGGACAGGGGCATTTCACGGATCAGGATACGAGAGTTATACTGCGATGAATGATCAAGATCGAGATCGAGATATTTCCATCGAAGATTATCTGTGA

Protein sequence

MVLPLTNHLLIRDDMSPGSIQKAASDAAMAVDAQYICNSSPDRGSSGGTGAFHGSGYESYTAMNDQDRDRDISIEDYL
Homology
[Close]
BLAST of Cp4.1LG01g26310 vs. TrEMBL
Match: A0A0A0LPY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401240 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MVLPLTNHLLIRDDMSPGSIQKAASDAAMAVDAQYICNSSPDRGSSGGTGAFHGSGYESY 60
           MVLPLTNHLLIRDDMSPGSIQ+AASDAAMAVDAQYICNS  DRGSSG  GAF  SG E Y
Sbjct: 74  MVLPLTNHLLIRDDMSPGSIQRAASDAAMAVDAQYICNSLGDRGSSGRAGAFQASGDEQY 133

Query: 61  TAMNDQDRDRDISIEDYL 79
           + +N+   D+D+SI+DYL
Sbjct: 134 SGLNN---DQDLSIQDYL 148

[Close]
BLAST of Cp4.1LG01g26310 vs. NCBI nr
Match: gi|659081116|ref|XP_008441160.1| (PREDICTED: ethylene-responsive transcription factor ERF019 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.0e-23
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MVLPLTNHLLIRDDMSPGSIQKAASDAAMAVDAQYICNSSPDRGSSGGTGAFHGSGYESY 60
           MVLPLTNHLLIRDDMSPGSIQ+AASDAAMAVDAQYICNS  DRGSSG  GAF  SG + Y
Sbjct: 74  MVLPLTNHLLIRDDMSPGSIQRAASDAAMAVDAQYICNSLADRGSSGRAGAFQASGDDQY 133

Query: 61  TAMNDQDRDRDISIEDYL 79
           TA N+   D+D+SI+DYL
Sbjct: 134 TAFNN---DQDLSIQDYL 148

[Close]
BLAST of Cp4.1LG01g26310 vs. NCBI nr
Match: gi|449442118|ref|XP_004138829.1| (PREDICTED: ethylene-responsive transcription factor ERF020 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1   MVLPLTNHLLIRDDMSPGSIQKAASDAAMAVDAQYICNSSPDRGSSGGTGAFHGSGYESY 60
           MVLPLTNHLLIRDDMSPGSIQ+AASDAAMAVDAQYICNS  DRGSSG  GAF  SG E Y
Sbjct: 74  MVLPLTNHLLIRDDMSPGSIQRAASDAAMAVDAQYICNSLGDRGSSGRAGAFQASGDEQY 133

Query: 61  TAMNDQDRDRDISIEDYL 79
           + +N+   D+D+SI+DYL
Sbjct: 134 SGLNN---DQDLSIQDYL 148

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g26310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g26310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPY2_CUCSA1.8e-2275.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401240 PE=4 SV=1[more]
BLAST of Cp4.1LG01g26310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g26310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081116|ref|XP_008441160.1|9.0e-2376.92PREDICTED: ethylene-responsive transcription factor ERF019 [Cucumis melo][more]
gi|449442118|ref|XP_004138829.1|2.6e-2275.64PREDICTED: ethylene-responsive transcription factor ERF020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g26310.1Cp4.1LG01g26310.1mRNA