Cp4.1LG01g23990 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g23990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A
Location	Cp4.1LG01 : 19346931 .. 19348274 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTTGTTCTCGAAGGATTTGATTTCCGTCCTATTGTTGCGTTGCGCAGATGATTGACGATCAGGCATTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTCATTGCCTACCATTACGTGGCGGCTGATCCGAAGTATGAAGGAAACTGAGATGAGAGACGTCGTTGTTCCGATGCTTAGATTGATCGGAAAAATGCATTACTGTTAGACGTAGGTCGTCTTGATATGACAGGTTTTTCTTCTTCGTCTATGAGAATTTTCTCCTAGCAACAATCAATGTTAACAGCAATTTCATTATGCAATTATAACTTATTCTCGTAATTTTTCGTGGTTATTTGATCTATTGCTTCAGTAGCTCTGTAGTAGATCGGATTCGTTCAAAAGAAAAAAAAAATCTTCTTCTTCTTCTTCTTCTTTCATATTAGCTACTCTTGCATTTACATGTTTTTCACAAGCGCTCACTTCTTTCAATGGTTTAACATCTCAAGTAGAGTAGATTTCTTCGAGAAAAGTTCTGCACTATCCATGGTGGTATGGAAAGAATGCACACTTGCATAGTACTGATATTCAGATCCTGTCCTATTAGTATTTTTTTTTCGTGCTTAAATTACACAGCTATTTTGTCCATTTGTAACCCAATCTACTTAAACAACGTAAAGGCTTGGCTCGGAGAATGAGCCTATATATATATAGGCATGGCTTAGTTAGTTATTTTCGCAATTCAGATAAGATTCAGACCGGGGGTTGGGTTAGGTCTCAAAAAGTATGGTTCTTGCCACTCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTACTCTCATGTTCGAGTGTTTGCTTGTCGTTTAGGCCGGTGAGTGAGATTTCTGCTCATTGCAGTCACCGTGGTTCCTCATTTTTAATTTTATCTAATCAATTTATAAATATATTCACAGTTTTAACAGATGTAATATGAATTTTATGTACTTCCAATTTTGCTTCAAGTAAAATTCAAAATGATCTAATAGAATTTATTATTCACAATTAAAAATCCACTTTTAATAGTTAGATTAAACAAATACAAACTATGATTTAATTTATAATTTTGTTGAAGAATATAAAATAAATTTTGTTTATTTATATATATGTTTTTACGGTTATAGTTTAGTATCTATATGATAAAATTATTTATTTATTAAATATTAGACACTTCTGCCCGAACATTTTTTCGAGGCAGCTTACCTAAGCTTAGGTGCATTGAGCGATGGAGATGGTGCTCGTCGTTCTGGCCATTTTTGTGTAGTCGGTAGAGTTGAAGCTATAAACTTTGATGTTGTCGTTTCGTGA

mRNA sequence

ATGATTATGATTGACGATCAGGCATTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTCATTGCCTACCATTACGTGGCGGCTGATCCGAACTACTCTTGCATTTACATGTTTTTCACAAGCGCTCACTTCTTTCAATGGTTTAACATCTCAAGTAGAGTAGATTTCTTCGAGAAAAGTTCTGCACTATCCATGGTGACACTTCTGCCCGAACATTTTTTCGAGGCAGCTTACCTAAGCTTAGGTGCATTGAGCGATGGAGATGGTGCTCGTCGTTCTGGCCATTTTTGTGTAGTCGGTAGAGTTGAAGCTATAAACTTTGATGTTGTCGTTTCGTGA

Coding sequence (CDS)

ATGATTATGATTGACGATCAGGCATTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTCATTGCCTACCATTACGTGGCGGCTGATCCGAACTACTCTTGCATTTACATGTTTTTCACAAGCGCTCACTTCTTTCAATGGTTTAACATCTCAAGTAGAGTAGATTTCTTCGAGAAAAGTTCTGCACTATCCATGGTGACACTTCTGCCCGAACATTTTTTCGAGGCAGCTTACCTAAGCTTAGGTGCATTGAGCGATGGAGATGGTGCTCGTCGTTCTGGCCATTTTTGTGTAGTCGGTAGAGTTGAAGCTATAAACTTTGATGTTGTCGTTTCGTGA

Protein sequence

MIMIDDQALGFLANFLGIFVFALVIAYHYVAADPNYSCIYMFFTSAHFFQWFNISSRVDFFEKSSALSMVTLLPEHFFEAAYLSLGALSDGDGARRSGHFCVVGRVEAINFDVVVS

Homology

[Close]

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot
Match: OST4A_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Arabidopsis thaliana GN=OST4A PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGF+ANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot
Match: OST4A_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Oryza sativa subsp. japonica GN=OST4A PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          M DDQ LGF ANFLGIF+F LVIAYH+V ADP Y
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVIAYHFVMADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot
Match: OST4C_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Arabidopsis thaliana GN=OST4C PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          M DDQ LGF ANFLGIF+F LVIAYH+V ADP +
Sbjct: 1  MFDDQDLGFFANFLGIFIFILVIAYHFVMADPKF 34

[Close]

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot
Match: OST4B_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Arabidopsis thaliana GN=OST4B PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          M DDQ LGF ANFLGIF+F +VIAYH+V A+P +
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKF 34

[Close]

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot
Match: OST4B_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Oryza sativa subsp. japonica GN=OST4B PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          M DDQ LGF ANFLGIF+F LV+AYH+V AD  Y
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVMAYHFVMADVKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. TrEMBL
Match: A0A061FNH8_THECC (Oligosaccaryltransferase OS=Theobroma cacao GN=TCM_042807 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADP Y
Sbjct: 42 MIDDQQLGFLANFLGIFIFALVIAYHYVMADPKY 75

[Close]

BLAST of Cp4.1LG01g23990 vs. TrEMBL
Match: V4NQB2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021851mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGF+ NFLGIF+FALVIAYHYVAADP Y
Sbjct: 52 MIDDQDLGFIVNFLGIFIFALVIAYHYVAADPKY 85

[Close]

BLAST of Cp4.1LG01g23990 vs. TrEMBL
Match: Q9C7B2_ARATH (Putative uncharacterized protein T2E22.10 OS=Arabidopsis thaliana GN=T2E22.10 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3    MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
            MIDDQ LGF+ANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1175 MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKY 1208

[Close]

BLAST of Cp4.1LG01g23990 vs. TrEMBL
Match: A0A0B0NL75_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00650 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDD+ LGFLANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1  MIDDEQLGFLANFLGIFIFALVIAYHYVMADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. TrEMBL
Match: A0A0D2TDN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256200 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIF+F LVIAYHYV ADP Y
Sbjct: 34 MIDDQQLGFLANFLGIFIFGLVIAYHYVMADPKY 67

[Close]

BLAST of Cp4.1LG01g23990 vs. TAIR10
Match: AT3G12587.1 (AT3G12587.1 Oligosaccaryltransferase)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGF+ANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. TAIR10
Match: AT5G02502.1 (AT5G02502.1 Oligosaccaryltransferase)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          M DDQ LGF ANFLGIF+F +VIAYH+V A+P +
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKF 34

[Close]

BLAST of Cp4.1LG01g23990 vs. NCBI nr
Match: gi|449449984|ref|XP_004142744.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIFVFALVIAYHYV ADP Y
Sbjct: 1  MIDDQELGFLANFLGIFVFALVIAYHYVTADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. NCBI nr
Match: gi|659126994|ref|XP_008463467.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1  MIDDQELGFLANFLGIFIFALVIAYHYVTADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. NCBI nr
Match: gi|590563476|ref|XP_007009382.1| (Oligosaccaryltransferase [Theobroma cacao])

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADP Y
Sbjct: 42 MIDDQQLGFLANFLGIFIFALVIAYHYVMADPKY 75

[Close]

BLAST of Cp4.1LG01g23990 vs. NCBI nr
Match: gi|729434615|ref|XP_010520121.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Tarenaya hassleriana])

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3  MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1  MIDDQDLGFLANFLGIFIFALVIAYHYVTADPKY 34

[Close]

BLAST of Cp4.1LG01g23990 vs. NCBI nr
Match: gi|12321970|gb|AAG51027.1|AC069474_26 (unknown protein; 24137-33208 [Arabidopsis thaliana])

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 3    MIDDQALGFLANFLGIFVFALVIAYHYVAADPNY 37
            MIDDQ LGF+ANFLGIF+FALVIAYHYV ADP Y
Sbjct: 1175 MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKY 1208

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OST4A_ARATH	2.9e-09	85.29	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ara...	[more]
OST4A_ORYSJ	1.6e-07	76.47	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ory...	[more]
OST4C_ARATH	6.0e-07	73.53	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Ara...	[more]
OST4B_ARATH	2.3e-06	67.65	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ara...	[more]
OST4B_ORYSJ	3.9e-06	70.59	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ory...	[more]

BLAST of Cp4.1LG01g23990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FNH8_THECC	1.9e-07	88.24	Oligosaccaryltransferase OS=Theobroma cacao GN=TCM_042807 PE=4 SV=1	[more]
V4NQB2_EUTSA	3.2e-07	85.29	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021851mg PE=4 SV=1	[more]
Q9C7B2_ARATH	3.2e-07	85.29	Putative uncharacterized protein T2E22.10 OS=Arabidopsis thaliana GN=T2E22.10 PE...	[more]
A0A0B0NL75_GOSAR	4.2e-07	85.29	Uncharacterized protein OS=Gossypium arboreum GN=F383_00650 PE=4 SV=1	[more]
A0A0D2TDN8_GOSRA	5.5e-07	85.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256200 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g23990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12587.1	1.6e-10	85.29	Oligosaccaryltransferase	[more]
AT5G02502.1	1.3e-07	67.65	Oligosaccaryltransferase	[more]

BLAST of Cp4.1LG01g23990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449984\|ref\|XP_004142744.1\|	1.6e-07	91.18	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
gi\|659126994\|ref\|XP_008463467.1\|	2.1e-07	88.24	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
gi\|590563476\|ref\|XP_007009382.1\|	2.7e-07	88.24	Oligosaccaryltransferase [Theobroma cacao]	[more]
gi\|729434615\|ref\|XP_010520121.1\|	2.7e-07	88.24	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
gi\|12321970\|gb\|AAG51027.1\|AC069474_26	4.6e-07	85.29	unknown protein; 24137-33208 [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018943	Oligosaccaryltransferase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23990.1	Cp4.1LG01g23990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018943	Oligosaccaryltransferase	PFAM	PF10215	Ost4	coord: 3..34 score: 1.7
IPR018943	Oligosaccaryltransferase	unknown	SSF103464	Oligosaccharyltransferase subunit ost4p	coord: 3..33 score: 2.2
None	No IPR available	PANTHER	PTHR28677	FAMILY NOT NAMED	coord: 1..40 score: 4.9
None	No IPR available	PANTHER	PTHR28677:SF1	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 4A	coord: 1..40 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g23990	Cucsa.010590	Cucumber (Gy14) v1	cgycpeB0522
Cp4.1LG01g23990	CmaCh04G026310	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g23990	CmoCh15G004150	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g23990	Carg04510	Silver-seed gourd	carcpeB0965

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g23990	Silver-seed gourd	carcpeB0374
Cp4.1LG01g23990	Cucumber (Chinese Long) v3	cpecucB0502
Cp4.1LG01g23990	Cucumber (Chinese Long) v3	cpecucB0519
Cp4.1LG01g23990	Wax gourd	cpewgoB0499
Cp4.1LG01g23990	Wax gourd	cpewgoB0505
Cp4.1LG01g23990	Wax gourd	cpewgoB0541
Cp4.1LG01g23990	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g23990	Cucurbita pepo (Zucchini)	cpecpeB384
Cp4.1LG01g23990	Cucurbita pepo (Zucchini)	cpecpeB407
Cp4.1LG01g23990	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g23990	Cucurbita maxima (Rimu)	cmacpeB877
Cp4.1LG01g23990	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g23990	Cucurbita moschata (Rifu)	cmocpeB814
Cp4.1LG01g23990	Wild cucumber (PI 183967)	cpecpiB416
Cp4.1LG01g23990	Cucumber (Chinese Long) v2	cpecuB417
Cp4.1LG01g23990	Bottle gourd (USVL1VR-Ls)	cpelsiB324
Cp4.1LG01g23990	Bottle gourd (USVL1VR-Ls)	cpelsiB336
Cp4.1LG01g23990	Watermelon (Charleston Gray)	cpewcgB344
Cp4.1LG01g23990	Watermelon (97103) v1	cpewmB381
Cp4.1LG01g23990	Melon (DHL92) v3.5.1	cpemeB358
Cp4.1LG01g23990	Cucumber (Gy14) v2	cgybcpeB627
Cp4.1LG01g23990	Melon (DHL92) v3.6.1	cpemedB418