Carg04510 (gene) Silver-seed gourd

Overview
NameCarg04510
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiondolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A
LocationCucurbita_argyrosperma_scaffold_032 : 775301 .. 775558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCAAATCTCTGGACCTGGAAATTCGTCTTCCGAACTGTTTGTGAATTACTACGTTGCAATGTCTAGTTTTGATGAATCTGAAATGATTGTCTGTTCTCGAAGGATTTGATTTCCGTCCTATTGTTGCGTTGCGCAGATGATTGACGATCAGGCGTTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTGATTGCCTACCATTACGTGGCGGCTGATCCTAAGTATGAAGGCAACTGA

mRNA sequence

ATGGAATCTCAAATCTCTGGACCTGGAAATTCGTCTTCCGAACTGTTTGTGAATTACTACGTTGCAATGTCTAGTTTTGATGAATCTGAAATGATTATGATTGACGATCAGGCGTTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTGATTGCCTACCATTACGTGGCGGCTGATCCTAAGTATGAAGGCAACTGA

Coding sequence (CDS)

ATGGAATCTCAAATCTCTGGACCTGGAAATTCGTCTTCCGAACTGTTTGTGAATTACTACGTTGCAATGTCTAGTTTTGATGAATCTGAAATGATTATGATTGACGATCAGGCGTTAGGGTTTCTTGCCAATTTTCTCGGCATTTTTGTCTTTGCTTTGGTGATTGCCTACCATTACGTGGCGGCTGATCCTAAGTATGAAGGCAACTGA

Protein sequence

MESQISGPGNSSSELFVNYYVAMSSFDESEMIMIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN
Homology
[Close]
BLAST of Carg04510 vs. NCBI nr
Match: XP_022960465.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like [Cucurbita moschata] >XP_022990160.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like [Cucurbita maxima] >XP_023548303.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN
Sbjct: 1  MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 37

[Close]
BLAST of Carg04510 vs. NCBI nr
Match: OMO58935.1 (Oligosaccaryltransferase [Corchorus capsularis])

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYVAADPKYEGN
Sbjct: 47 MIDDQQLGFLANFLGIFIFALVIAYHYVAADPKYEGN 83

[Close]
BLAST of Carg04510 vs. NCBI nr
Match: XP_004142744.1 (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis sativus] >XP_011655359.1 PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIFVFALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDQELGFLANFLGIFVFALVIAYHYVTADPKYEGN 37

[Close]
BLAST of Carg04510 vs. NCBI nr
Match: XP_008463467.1 (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis melo] >XP_008463468.1 PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucumis melo] >XP_022939332.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucurbita moschata] >XP_022993977.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucurbita maxima] >XP_023551013.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDQELGFLANFLGIFIFALVIAYHYVTADPKYEGN 37

[Close]
BLAST of Carg04510 vs. NCBI nr
Match: XP_022134037.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDQMLGFLANFLGIFIFALVIAYHYVTADPKYEGN 37

[Close]
BLAST of Carg04510 vs. TAIR10
Match: AT3G12587.1 (Oligosaccaryltransferase)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYE 68
          MIDDQ LGF+ANFLGIF+FALVIAYHYV ADPKYE
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKYE 35

[Close]
BLAST of Carg04510 vs. TAIR10
Match: AT5G02502.1 (Oligosaccaryltransferase)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-09
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYE 68
          M DDQ LGF ANFLGIF+F +VIAYH+V A+PK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKFE 35

[Close]
BLAST of Carg04510 vs. Swiss-Prot
Match: sp|Q9LHK3|OST4A_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Arabidopsis thaliana OX=3702 GN=OST4A PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYE 68
          MIDDQ LGF+ANFLGIF+FALVIAYHYV ADPKYE
Sbjct: 1  MIDDQDLGFIANFLGIFIFALVIAYHYVTADPKYE 35

[Close]
BLAST of Carg04510 vs. Swiss-Prot
Match: sp|C7J4U3|OST4A_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Oryza sativa subsp. japonica OX=39947 GN=OST4A PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          M DDQ LGF ANFLGIF+F LVIAYH+V ADPKYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVIAYHFVMADPKYEGN 37

[Close]
BLAST of Carg04510 vs. Swiss-Prot
Match: sp|C7J0R5|OST4B_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Oryza sativa subsp. japonica OX=39947 GN=OST4B PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-09
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          M DDQ LGF ANFLGIF+F LV+AYH+V AD KYEGN
Sbjct: 1  MFDDQDLGFFANFLGIFIFVLVMAYHFVMADVKYEGN 37

[Close]
BLAST of Carg04510 vs. Swiss-Prot
Match: sp|Q9SF57|OST4C_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Arabidopsis thaliana OX=3702 GN=OST4C PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYE 68
          M DDQ LGF ANFLGIF+F LVIAYH+V ADPK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFILVIAYHFVMADPKFE 35

[Close]
BLAST of Carg04510 vs. Swiss-Prot
Match: sp|Q8L986|OST4B_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Arabidopsis thaliana OX=3702 GN=OST4B PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYE 68
          M DDQ LGF ANFLGIF+F +VIAYH+V A+PK+E
Sbjct: 1  MFDDQDLGFFANFLGIFIFIMVIAYHFVVAEPKFE 35

[Close]
BLAST of Carg04510 vs. TrEMBL
Match: tr|A0A1R3GLF1|A0A1R3GLF1_COCAP (Oligosaccaryltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_25238 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYVAADPKYEGN
Sbjct: 47 MIDDQQLGFLANFLGIFIFALVIAYHYVAADPKYEGN 83

[Close]
BLAST of Carg04510 vs. TrEMBL
Match: tr|A0A1S3CJC4|A0A1S3CJC4_CUCME (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Cucumis melo OX=3656 GN=LOC103501634 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDQELGFLANFLGIFIFALVIAYHYVTADPKYEGN 37

[Close]
BLAST of Carg04510 vs. TrEMBL
Match: tr|A0A0B0NL75|A0A0B0NL75_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_00650 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDD+ LGFLANFLGIF+FALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDEQLGFLANFLGIFIFALVIAYHYVMADPKYEGN 37

[Close]
BLAST of Carg04510 vs. TrEMBL
Match: tr|A0A061FNH8|A0A061FNH8_THECC (Oligosaccaryltransferase OS=Theobroma cacao OX=3641 GN=TCM_042807 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDDQ LGFLANFLGIF+FALVIAYHYV ADPKY+GN
Sbjct: 42 MIDDQQLGFLANFLGIFIFALVIAYHYVMADPKYDGN 78

[Close]
BLAST of Carg04510 vs. TrEMBL
Match: tr|A0A1U8HHM5|A0A1U8HHM5_GOSHI (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like OS=Gossypium hirsutum OX=3635 GN=LOC107886200 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 33 MIDDQALGFLANFLGIFVFALVIAYHYVAADPKYEGN 70
          MIDD+ LGFLANFLGIF+FALVIAYHYV ADPKYEGN
Sbjct: 1  MIDDEQLGFLANFLGIFIFALVIAYHYVMADPKYEGN 37

The following BLAST results are available for this feature:
BLAST of Carg04510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960465.11.2e-11100.00dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like [... [more]
OMO58935.16.1e-1194.59Oligosaccaryltransferase [Corchorus capsularis][more]
XP_004142744.11.4e-1094.59PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni... [more]
XP_008463467.11.8e-1091.89PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni... [more]
XP_022134037.11.8e-1091.89dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A [Momor... [more]
BLAST of Carg04510 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12587.13.0e-1288.57Oligosaccaryltransferase[more]
AT5G02502.12.4e-0971.43Oligosaccaryltransferase[more]
BLAST of Carg04510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LHK3|OST4A_ARATH5.4e-1188.57Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ara... [more]
sp|C7J4U3|OST4A_ORYSJ7.1e-1181.08Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Ory... [more]
sp|C7J0R5|OST4B_ORYSJ1.8e-0975.68Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ory... [more]
sp|Q9SF57|OST4C_ARATH1.1e-0877.14Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C OS=Ara... [more]
sp|Q8L986|OST4B_ARATH4.3e-0871.43Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B OS=Ara... [more]
BLAST of Carg04510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1R3GLF1|A0A1R3GLF1_COCAP4.0e-1194.59Oligosaccaryltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_25238 PE=4... [more]
tr|A0A1S3CJC4|A0A1S3CJC4_CUCME1.2e-1091.89dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A OS=Cuc... [more]
tr|A0A0B0NL75|A0A0B0NL75_GOSAR3.4e-1089.19Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_00650 PE=4 SV=1[more]
tr|A0A061FNH8|A0A061FNH8_THECC3.4e-1089.19Oligosaccaryltransferase OS=Theobroma cacao OX=3641 GN=TCM_042807 PE=4 SV=1[more]
tr|A0A1U8HHM5|A0A1U8HHM5_GOSHI3.4e-1089.19dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like O... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036330Ost4p_sf
IPR018943Oligosaccaryltransferase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04510-RACarg04510-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018943OligosaccaryltransferasePFAMPF10215Ost4coord: 33..65
e-value: 1.1E-14
score: 53.8
NoneNo IPR availablePANTHERPTHR28677FAMILY NOT NAMEDcoord: 29..68
IPR036330Oligosaccharyltransferase subunit ost4p superfamilySUPERFAMILYSSF103464Oligosaccharyltransferase subunit ost4pcoord: 33..63