Cp4.1LG01g23870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g23870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein
LocationCp4.1LG01 : 19318189 .. 19319910 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACGAGACCCGGTTCGGAAAGAAGCCGAAAACCAAATCTATTTAATTAAACTTACTATAAATACGTTAGGGTTTCCTGCTTTCTCTCTTCTCTCCGCTTGAACCCTGGAAAGAAGCCCTAGTTCCCGCCCCTACTCGTCGGACTTCTCGAAGTCGCCTCTGCAATTGCCGTAAGTATTTAGAGTCTTTATTCATATCAATGTAGCTTTATATACGCCAAGATTGATCTGCTAGTATATATATTTTTTCATGTTAATCGTCAGGGTACTGAATCAGGAAGTGTTCTGTTTTTCATGATTTATACGCTAGAGAGTGGGAAATTTTTGCTGTTTCACTTTTAAAGTTCGAATTCTGCGAGTTTATGACTGTTCTGTATTTTTTGTTTTTGTTTTCGGGTTATAGACACTAGTCAACGCGCCTTTCTCCTTTCTTTACTGATGTAAGGGTTGCTTGGATGCTTGCTGTTTTATTTTATATCATTTTTTTTGGTATGTTTAATGATACTCATTAGAAATATAGGCGGCTGATAGTTTGTTTTTCGTATGTTTGTTGTTAGTTGTTATATATGTTTTTCGGATCTTAGAGAGGCACCTGATAGTTTGTCATGGACGATAATGTGATTTTATAGTCTTTCTTGCATTTCACTTTGGGGATTTTAATATTTGCAGTAACAATGGTTCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTATAATGCTGAGAAACGTGGGAAGCGCCAGGTCATGATAAGGCCATCTTCTAAAGTTATCATCAAGTTTCTTAATGTCATGCAAAAGCATGGTAAATGTCAAGAAGTTCACACCAGTTCTTTTTATTTGCACCTTAAACCTGCATGACTTTATTTTGTTCTAAATTTCGTTGTTTTAGGATACATTGGTGAGTTTGAGTACGTTGACGATCATAGGTCAGGGAAAATTGTTGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATCAGTCCTCGTTTTGATATTGGTGTCAAGGAGATTGAAGGTTGGACTGCACGGTTGCTTCCCTCGAGACAGGTATTCTACTTACTCTGAGACTGCTTATTTAATTAGTATTATGCTTACGATTTATTAGTTTTTGCCTAATCCAAACTTTTATGACAATTATATTCGACTGTTTACAGTTTGGTTTCATTGTGTTGACAACTTCTGCGGGAATCATGGACCACGAAGAGGCCCGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGTTTCTTCTACTAAGCAATATTGTGAGATTGATTTTTCTTTTTTTTTTTCGGTATTTTCAGCACTTTTTGAACTTTAGTGGGAAGCAGTAGTGAGTCCTGTTTTGTTTTATTTGTGCCGTTTTGGTTGGGAGGATACAGGATACCACCTGCATTCTTTTTGAAGACCTTGATATTGTTTAATGAGCCTTTTCTTTTAATCTTCTGGGTTGTTTTTGGTTTGCCCCTTAAACTGAAATTGTTGTAGTAGTTGTCTAGCTCCGGAATTGATTGCAGTTTTCCTGGACCGCAATGATCTTCTTCAACCCATGAATTTGTATGTTGTACAACTTGTTTACGCTTGGTTTCATTATCTACACATCTTGGTGGTTTCATAAACAGTTTTGTTCAACACTTGAGACCCATTTTTCAGAAATAAACCCTAGAAGAGAAAATTTGTAGGCTCCTAGAAACTAGTCTTGTAGTCACCTTGTGGTGG

mRNA sequence

TGACGAGACCCGGTTCGGAAAGAAGCCGAAAACCAAATCTATTTAATTAAACTTACTATAAATACGTTAGGGTTTCCTGCTTTCTCTCTTCTCTCCGCTTGAACCCTGGAAAGAAGCCCTAGTTCCCGCCCCTACTCGTCGGACTTCTCGAAGTCGCCTCTGCAATTGCCTAACAATGGTTCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTATAATGCTGAGAAACGTGGGAAGCGCCAGGTCATGATAAGGCCATCTTCTAAAGTTATCATCAAGTTTCTTAATGTCATGCAAAAGCATGGATACATTGGTGAGTTTGAGTACGTTGACGATCATAGGTCAGGGAAAATTGTTGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATCAGTCCTCGTTTTGATATTGGTGTCAAGGAGATTGAAGGTTGGACTGCACGGTTGCTTCCCTCGAGACAGTTTGGTTTCATTGTGTTGACAACTTCTGCGGGAATCATGGACCACGAAGAGGCCCGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGTTTCTTCTACTAAGCAATATTGATACCACCTGCATTCTTTTTGAAGACCTTGATATTGTTTAATGAGCCTTTTCTTTTAATCTTCTGGGTTGTTTTTGGTTTGCCCCTTAAACTGAAATTGTTGTAGTAGTTGTCTAGCTCCGGAATTGATTGCAGTTTTCCTGGACCGCAATGATCTTCTTCAACCCATGAATTTGTATGTTGTACAACTTGTTTACGCTTGGTTTCATTATCTACACATCTTGGTGGTTTCATAAACAGTTTTGTTCAACACTTGAGACCCATTTTTCAGAAATAAACCCTAGAAGAGAAAATTTGTAGGCTCCTAGAAACTAGTCTTGTAGTCACCTTGTGGTGG

Coding sequence (CDS)

ATGGTTCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTATAATGCTGAGAAACGTGGGAAGCGCCAGGTCATGATAAGGCCATCTTCTAAAGTTATCATCAAGTTTCTTAATGTCATGCAAAAGCATGGATACATTGGTGAGTTTGAGTACGTTGACGATCATAGGTCAGGGAAAATTGTTGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATCAGTCCTCGTTTTGATATTGGTGTCAAGGAGATTGAAGGTTGGACTGCACGGTTGCTTCCCTCGAGACAGTTTGGTTTCATTGTGTTGACAACTTCTGCGGGAATCATGGACCACGAAGAGGCCCGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGTTTCTTCTACTAA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Homology
[Close]
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 4.8e-69
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 261.2 bits (666), Expect = 6.2e-69
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-68
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 9.0e-68
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match: I3SJY8_MEDTR (Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match: A0A0D2UWX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match: A0A0D2P107_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match: A0A0D2VKJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match: I3SUM7_MEDTR (Ribosomal protein S8 OS=Medicago truncatula GN=MTR_4g117470 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-70
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-70
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 261.2 bits (666), Expect = 3.5e-70
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 246.9 bits (629), Expect = 6.8e-66
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-36
Identity = 66/125 (52.80%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGKIVVEL 65
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 66  NGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125
            GR+N C  ++ R D+  KEIE +T R LP+RQ+G++V+TT  GI+DHEEA ++NVGG+V
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 126 LGFFY 131
           LGFFY
Sbjct: 125 LGFFY 129

[Close]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match: gi|922370341|ref|XP_013457334.1| (ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 262.3 bits (669), Expect = 4.5e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match: gi|568215132|ref|NP_001275136.1| (uncharacterized protein LOC102577793 [Solanum tuberosum])

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match: gi|763816942|gb|KJB83794.1| (hypothetical protein B456_013G265000 [Gossypium raimondii])

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match: gi|728820359|gb|KHG03722.1| (40S ribosomal S15a-1 -like protein [Gossypium arboreum])

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 40  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 99

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 100 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 159

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 160 VGGKVLGFFY 169

[Close]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match: gi|502139897|ref|XP_004503959.1| (PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum])

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-67
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R15A1_ARATH4.8e-6996.9240S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2[more]
R15A4_ARATH6.2e-6996.9240S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3[more]
RS15A_BRANA1.4e-6896.1540S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3[more]
RS15A_DAUCA9.0e-6895.3840S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3[more]
R15A3_ARATH1.2e-6490.7740S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2[more]
BLAST of Cp4.1LG01g23870 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SJY8_MEDTR3.1e-6797.69Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1[more]
A0A0D2UWX7_GOSRA4.1e-6797.69Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1[more]
A0A0D2P107_GOSRA4.1e-6797.69Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1[more]
A0A0D2VKJ6_GOSRA4.1e-6797.69Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1[more]
I3SUM7_MEDTR4.1e-6797.69Ribosomal protein S8 OS=Medicago truncatula GN=MTR_4g117470 PE=2 SV=1[more]
BLAST of Cp4.1LG01g23870 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07770.12.7e-7096.92 ribosomal protein S15A[more]
AT5G59850.12.7e-7096.92 Ribosomal protein S8 family protein[more]
AT3G46040.13.5e-7096.92 ribosomal protein S15A D[more]
AT2G39590.16.8e-6690.77 Ribosomal protein S8 family protein[more]
AT4G29430.11.9e-3652.80 ribosomal protein S15A E[more]
BLAST of Cp4.1LG01g23870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922370341|ref|XP_013457334.1|4.5e-6797.69ribosomal protein S8 [Medicago truncatula][more]
gi|568215132|ref|NP_001275136.1|5.8e-6797.69uncharacterized protein LOC102577793 [Solanum tuberosum][more]
gi|763816942|gb|KJB83794.1|5.8e-6797.69hypothetical protein B456_013G265000 [Gossypium raimondii][more]
gi|728820359|gb|KHG03722.1|5.8e-6797.6940S ribosomal S15a-1 -like protein [Gossypium arboreum][more]
gi|502139897|ref|XP_004503959.1|5.8e-6797.69PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g23870.1Cp4.1LG01g23870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8HAMAPMF_01302_ARibosomal_S8_Acoord: 2..130
score: 32
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 1..130
score: 1.0E
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 7..130
score: 9.8
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 100..117
scor
IPR000630Ribosomal protein S8unknownSSF56047Ribosomal protein S8coord: 4..130
score: 9.03
NoneNo IPR availableGENE3DG3DSA:3.30.1370.30coord: 1..68
score: 7.3
NoneNo IPR availableGENE3DG3DSA:3.30.1490.10coord: 70..128
score: 2.3
NoneNo IPR availablePANTHERPTHR11758:SF16RIBOSOMAL PROTEIN S15Acoord: 1..130
score: 1.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g23870CmaCh04G026260Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g23870CmaCh15G004070Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g23870CmoCh15G004220Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g23870CmoCh04G027500Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g23870Cla004690Watermelon (97103) v1cpewmB381
Cp4.1LG01g23870ClCG09G020100Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g23870Lsi02G016640Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g23870Carg02363Silver-seed gourdcarcpeB0374
Cp4.1LG01g23870Carg04515Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g23870Cp4.1LG13g09540Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g23870Cucumber (Gy14) v1cgycpeB0016
Cp4.1LG01g23870Cucurbita pepo (Zucchini)cpecpeB384
Cp4.1LG01g23870Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG01g23870Cucurbita maxima (Rimu)cmacpeB877
Cp4.1LG01g23870Cucurbita moschata (Rifu)cmocpeB814
Cp4.1LG01g23870Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g23870Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g23870Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g23870Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g23870Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g23870Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g23870Cucumber (Chinese Long) v3cpecucB0502
Cp4.1LG01g23870Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g23870Wax gourdcpewgoB0499
Cp4.1LG01g23870Wax gourdcpewgoB0505
Cp4.1LG01g23870Wax gourdcpewgoB0541