CmaCh15G004070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G004070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein S15a component of cytosolic 80S ribosome and 40S small subunit
Location	Cma_Chr15 : 1822964 .. 1824484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCCTTACTCTTCTCTCTCAGCTGTGGAAAGAAGCCCTAGTCGTCCCCCATTTGGTGTTGCCCCTGCAACTTTCGTTTCTTATTTGCTGTACGTGGTTTCTTCTGCCCTTCATTTTCTATCGCTATTGATGTTGTAAGCTAGAAATTTGTTTCGTTTTTCATCTTTTATGTTCAATTACTTGTTCTACTCGATGGTTCAAGTATATGTGTCGAATTTATATACTGTTCGAGAGGTAACTTGGAAGTCACCGGATGTCGAAGGGTCGATTGCATGATTTGTTGATTAATTTCATAGGTTGTCTTGTTATTTAATGCTTCGCATTAGAACTAGGGTTTTAGGAACTGGGAACGATATACACATTATTCGGGCCTAAGAGTGGTGGCTGGCAGTTTGTGTAGGACGATATAGTGATTCTTGTAAGCCGTCAGTCGATGAAGGGTTGATTGTATGGTTTGTTAATTAATCTTATTGCTTGTTTTGTTATTTAATGATTCCCGTTTTAATTAGGGTTTTACGAATTGGGAACGAAATTCGCATTATTTGGGTCTAAGAGTGGTGACTGGCAGATTATATAAGATGATAAAATGATATTTCTAGCTGTTAAGTCTAATTTTGCGATATACTTAACTTGAAATTTGGGGATTTACGTATTTGCAGTTACAATGGTGCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTACAATGCTGAGAAACGGGGCAAGCGCCAGGTCATGATAAGGCCATCTTCCAAAGTTATCATCAAGTTTCTTCTTGTTATGCAGAAGCATGGTATTCATTATTAAGAAATTCTGTCAATCTCATTCTTTGCACTTTAAACCTCTTTGATTTTAATTCTATTCAAAATTTCATTGTTATAGGATACATTGGGGAATTTGAGTACGTTGATGATCATAGGTCAGGGAAAATCGTCGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATAAGTCCCCGTTTTGATGTGGGTGTCAAGGAGATTGAAGGTTGGACTGCAAGGTTGCTACCCTCAAGACAGGTATTTTTTTTTCTTTATTTCTAGTATTATGCTCATGATTTGCCTAAGCCAAACTCTTACAATAATGATTATCGAACGTTTACAGTTTGGATTCATTGTGTTGACAACATCTGCGGGAATCATGGATCATGAAGAGGCCAGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGCTTCTTCTACTAAGCAATGACGTGAGATTTATTTCTTCATTCGGTATTTTCTGCACCTTTGAACTTAAATGGGAAGCAGTAGAGAGTCCTGTTTTGTTTTAGTTGCCGTTTTGGTTAGTGGGAGGATACAGGATTTGGCCTGCATTCTTTTTGAAGACGTTGATATTGTTTAATGAGCCTTTTCTTAATCTATTAGTTTTATTTGTTTACCATACTGAAAACTGAAATTGTTGTAGTTGGTCAAGCTTGAATTGATTGCAAATTTCTCGAACCACATCGATTTGTTCGTCGTATAGCTTGCC

mRNA sequence

TATTCCTTACTCTTCTCTCTCAGCTGTGGAAAGAAGCCCTAGTCGTCCCCCATTTGGTGTTGCCCCTGCAACTTTCGTTTCTTATTTGCTTTACAATGGTGCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTACAATGCTGAGAAACGGGGCAAGCGCCAGGTCATGATAAGGCCATCTTCCAAAGTTATCATCAAGTTTCTTCTTGTTATGCAGAAGCATGGATACATTGGGGAATTTGAGTACGTTGATGATCATAGGTCAGGGAAAATCGTCGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATAAGTCCCCGTTTTGATGTGGGTGTCAAGGAGATTGAAGGTTGGACTGCAAGGTTGCTACCCTCAAGACAGTTTGGATTCATTGTGTTGACAACATCTGCGGGAATCATGGATCATGAAGAGGCCAGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGCTTCTTCTACTAAGCAATGACGTGAGATTTATTTCTTCATTCGGTATTTTCTGCACCTTTGAACTTAAATGGGAAGCAGTAGAGAGTCCTGTTTTGTTTTAGTTGCCGTTTTGGTTAGTGGGAGGATACAGGATTTGGCCTGCATTCTTTTTGAAGACGTTGATATTGTTTAATGAGCCTTTTCTTAATCTATTAGTTTTATTTGTTTACCATACTGAAAACTGAAATTGTTGTAGTTGGTCAAGCTTGAATTGATTGCAAATTTCTCGAACCACATCGATTTGTTCGTCGTATAGCTTGCC

Coding sequence (CDS)

ATGGTGCGCGTGAGTGTTCTGAATGATGCTCTTAAAAGCATGTACAATGCTGAGAAACGGGGCAAGCGCCAGGTCATGATAAGGCCATCTTCCAAAGTTATCATCAAGTTTCTTCTTGTTATGCAGAAGCATGGATACATTGGGGAATTTGAGTACGTTGATGATCATAGGTCAGGGAAAATCGTCGTTGAACTGAATGGGAGACTCAACAAATGTGGTGTCATAAGTCCCCGTTTTGATGTGGGTGTCAAGGAGATTGAAGGTTGGACTGCAAGGTTGCTACCCTCAAGACAGTTTGGATTCATTGTGTTGACAACATCTGCGGGAATCATGGATCATGAAGAGGCCAGAAGAAAGAACGTTGGTGGTAAAGTGCTTGGCTTCTTCTACTAA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY

Homology

[Close]

BLAST of CmaCh15G004070 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 9.6e-70
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-69
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-69
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 259.2 bits (661), Expect = 2.4e-68
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TrEMBL
Match: A0A0B0MX15_GOSAR (40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_06727 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TrEMBL
Match: A0A0D2P107_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]

BLAST of CmaCh15G004070 vs. TrEMBL
Match: A0A0D2VKJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]

BLAST of CmaCh15G004070 vs. TrEMBL
Match: A0A0B0MTM3_GOSAR (40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 40  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 99

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 100 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 159

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 160 VGGKVLGFFY 169

[Close]

BLAST of CmaCh15G004070 vs. TrEMBL
Match: A0A0D2UWX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 263.8 bits (673), Expect = 5.4e-71
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 263.8 bits (673), Expect = 5.4e-71
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 263.5 bits (672), Expect = 7.1e-71
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 246.1 bits (627), Expect = 1.2e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]

BLAST of CmaCh15G004070 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-36
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGKIVVEL 65
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125
            GR+N C  ++ R DV  KEIE +T R LP+RQ+G++V+TT  GI+DHEEA ++NVGG+V
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 126 LGFFY 131
           LGFFY
Sbjct: 125 LGFFY 129

[Close]

BLAST of CmaCh15G004070 vs. NCBI nr
Match: gi|763752780|gb|KJB20168.1| (hypothetical protein B456_003G136100 [Gossypium raimondii])

HSP 1 Score: 265.0 bits (676), Expect = 6.9e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]

BLAST of CmaCh15G004070 vs. NCBI nr
Match: gi|728820359|gb|KHG03722.1| (40S ribosomal S15a-1 -like protein [Gossypium arboreum])

HSP 1 Score: 265.0 bits (676), Expect = 6.9e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 40  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 99

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 100 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 159

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 160 VGGKVLGFFY 169

[Close]

BLAST of CmaCh15G004070 vs. NCBI nr
Match: gi|502139897|ref|XP_004503959.1| (PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum])

HSP 1 Score: 265.0 bits (676), Expect = 6.9e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of CmaCh15G004070 vs. NCBI nr
Match: gi|763816942|gb|KJB83794.1| (hypothetical protein B456_013G265000 [Gossypium raimondii])

HSP 1 Score: 265.0 bits (676), Expect = 6.9e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]

BLAST of CmaCh15G004070 vs. NCBI nr
Match: gi|449453772|ref|XP_004144630.1| (PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 9.0e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

The following BLAST results are available for this feature:

BLAST of CmaCh15G004070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R15A1_ARATH	9.6e-70	97.69	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2	[more]
R15A4_ARATH	1.3e-69	97.69	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3	[more]
RS15A_BRANA	2.8e-69	96.92	40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3	[more]
RS15A_DAUCA	2.4e-68	96.15	40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3	[more]
R15A3_ARATH	2.1e-64	90.77	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2	[more]

BLAST of CmaCh15G004070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0MX15_GOSAR	4.8e-68	99.23	40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_06727 PE=3 SV=1	[more]
A0A0D2P107_GOSRA	4.8e-68	99.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1	[more]
A0A0D2VKJ6_GOSRA	4.8e-68	99.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1	[more]
A0A0B0MTM3_GOSAR	4.8e-68	99.23	40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1	[more]
A0A0D2UWX7_GOSRA	4.8e-68	99.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1	[more]

BLAST of CmaCh15G004070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07770.1	5.4e-71	97.69	ribosomal protein S15A	[more]
AT5G59850.1	5.4e-71	97.69	Ribosomal protein S8 family protein	[more]
AT3G46040.1	7.1e-71	97.69	ribosomal protein S15A D	[more]
AT2G39590.1	1.2e-65	90.77	Ribosomal protein S8 family protein	[more]
AT4G29430.1	2.5e-36	53.60	ribosomal protein S15A E	[more]

BLAST of CmaCh15G004070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763752780\|gb\|KJB20168.1\|	6.9e-68	99.23	hypothetical protein B456_003G136100 [Gossypium raimondii]	[more]
gi\|728820359\|gb\|KHG03722.1\|	6.9e-68	99.23	40S ribosomal S15a-1 -like protein [Gossypium arboreum]	[more]
gi\|502139897\|ref\|XP_004503959.1\|	6.9e-68	99.23	PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum]	[more]
gi\|763816942\|gb\|KJB83794.1\|	6.9e-68	99.23	hypothetical protein B456_013G265000 [Gossypium raimondii]	[more]
gi\|449453772\|ref\|XP_004144630.1\|	9.0e-68	99.23	PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000630	Ribosomal_S8

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004070.1	CmaCh15G004070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	HAMAP	MF_01302_A	Ribosomal_S8_A	coord: 2..130 score: 32
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..130 score: 1.2E
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 7..130 score: 4.7
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 100..117 scor
IPR000630	Ribosomal protein S8	unknown	SSF56047	Ribosomal protein S8	coord: 4..130 score: 3.53
None	No IPR available	GENE3D	G3DSA:3.30.1370.30		coord: 1..68 score: 3.7
None	No IPR available	GENE3D	G3DSA:3.30.1490.10		coord: 70..128 score: 1.4
None	No IPR available	PANTHER	PTHR11758:SF16	RIBOSOMAL PROTEIN S15A	coord: 1..130 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G004070	Cla004690	Watermelon (97103) v1	cmawmB252
CmaCh15G004070	ClCG09G020100	Watermelon (Charleston Gray)	cmawcgB244
CmaCh15G004070	CmoCh15G004220	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G004070	CmoCh04G027500	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G004070	Lsi02G016640	Bottle gourd (USVL1VR-Ls)	cmalsiB272
CmaCh15G004070	Cp4.1LG01g23870	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G004070	Cp4.1LG13g09540	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G004070	Cla97C09G181480	Watermelon (97103) v2	cmawmbB322
CmaCh15G004070	Carg02363	Silver-seed gourd	carcmaB0362
CmaCh15G004070	Carg04515	Silver-seed gourd	carcmaB0961

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G004070	CmaCh04G026260	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G004070	Wax gourd	cmawgoB0383
CmaCh15G004070	Wax gourd	cmawgoB0381
CmaCh15G004070	Wax gourd	cmawgoB0405
CmaCh15G004070	Cucurbita maxima (Rimu)	cmacmaB319
CmaCh15G004070	Cucurbita maxima (Rimu)	cmacmaB322
CmaCh15G004070	Cucumber (Gy14) v1	cgycmaB0017
CmaCh15G004070	Cucumber (Gy14) v1	cgycmaB0465
CmaCh15G004070	Cucurbita moschata (Rifu)	cmacmoB306
CmaCh15G004070	Cucurbita moschata (Rifu)	cmacmoB307
CmaCh15G004070	Wild cucumber (PI 183967)	cmacpiB312
CmaCh15G004070	Wild cucumber (PI 183967)	cmacpiB305
CmaCh15G004070	Cucumber (Chinese Long) v2	cmacuB300
CmaCh15G004070	Cucumber (Chinese Long) v2	cmacuB306
CmaCh15G004070	Melon (DHL92) v3.5.1	cmameB251
CmaCh15G004070	Cucurbita pepo (Zucchini)	cmacpeB303
CmaCh15G004070	Cucurbita pepo (Zucchini)	cmacpeB314
CmaCh15G004070	Cucurbita pepo (Zucchini)	cmacpeB315
CmaCh15G004070	Bottle gourd (USVL1VR-Ls)	cmalsiB271
CmaCh15G004070	Bottle gourd (USVL1VR-Ls)	cmalsiB278
CmaCh15G004070	Bottle gourd (USVL1VR-Ls)	cmalsiB284
CmaCh15G004070	Cucumber (Gy14) v2	cgybcmaB328
CmaCh15G004070	Cucumber (Gy14) v2	cgybcmaB492
CmaCh15G004070	Cucumber (Gy14) v2	cgybcmaB610
CmaCh15G004070	Cucumber (Gy14) v2	cgybcmaB617
CmaCh15G004070	Melon (DHL92) v3.6.1	cmamedB285
CmaCh15G004070	Melon (DHL92) v3.6.1	cmamedB302
CmaCh15G004070	Melon (DHL92) v3.6.1	cmamedB325
CmaCh15G004070	Silver-seed gourd	carcmaB0942
CmaCh15G004070	Cucumber (Chinese Long) v3	cmacucB0340
CmaCh15G004070	Cucumber (Chinese Long) v3	cmacucB0354
CmaCh15G004070	Cucumber (Chinese Long) v3	cmacucB0360
CmaCh15G004070	Watermelon (97103) v2	cmawmbB294
CmaCh15G004070	Watermelon (97103) v2	cmawmbB301