Cp4.1LG01g23750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g23750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExpansin
LocationCp4.1LG01 : 19451816 .. 19452399 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAGTAAAATCCTCCACTCCTCTCTGTAATGGCGGCAACTGTTTCAACAGCATTGCTCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGTAGACAACATAACGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGTATTCAAAATTCAATTTCTTTTTCAGTTAATTTAATTAATTTTTTTAATCGTATTAATATTTTAGCTATGGTTACAGGGGGCGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCGTTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGTGCTTGTTTCCAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTATCCATGCCCATGTTCCTCAAAATCGCCCAGTACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGTAA

mRNA sequence

CAGAGTAAAATCCTCCACTCCTCTCTGTAATGGCGGCAACTGTTTCAACAGCATTGCTCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGTAGACAACATAACGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGCGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCGTTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGTGCTTGTTTCCAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTATCCATGCCCATGTTCCTCAAAATCGCCCAGTACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGTAA

Coding sequence (CDS)

ATGGCGGCAACTGTTTCAACAGCATTGCTCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGTAGACAACATAACGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGCGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCGTTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGTGCTTGTTTCCAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTATCCATGCCCATGTTCCTCAAAATCGCCCAGTACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGTAA

Protein sequence

MAATVSTALLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR
Homology
[Close]
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-68
Identity = 116/150 (77.33%), Postives = 135/150 (90.00%), Query Frame = 1 

Query: 9   LLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVN 68
           L+  +L   LA+   +  GVY GG W++AHATFYGG+DASGTMGGACGYGNLYSQGYGVN
Sbjct: 6   LVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65

Query: 69  TAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCN 128
           TAALSTALFN+G SCGACF++KC +DP+WCH+G+PSIF+TATNFCPPN+A P+DNGGWCN
Sbjct: 66  TAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCN 125

Query: 129 PPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PPRPHFDL+MPMFLKIA+YRAGIVPVSFRR
Sbjct: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-67
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 1 

Query: 27  GVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGAC 86
           G YGGG WQSAHATFYGG+DASGTMGGACGYGNLYSQGYGVN AALSTALFN G SCGAC
Sbjct: 29  GAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGAC 88

Query: 87  FQIKCVNDP--QWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKI 146
           F+IKCVN P  +WCH G+PSI +TATNFCPPNYALP+DNGGWCNPPRPHFDL+MPMFL I
Sbjct: 89  FEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHI 148

Query: 147 AQYRAGIVPVSFRR 159
           A+YRAGIVPVS+RR
Sbjct: 149 AEYRAGIVPVSYRR 162

[Close]
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.3e-67
Identity = 110/131 (83.97%), Postives = 122/131 (93.13%), Query Frame = 1 

Query: 28  VYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACF 87
           V+ GG WQ+AHATFYGGNDASGTMGGACGYGNLYSQGYG NTAALST+LFN G SCGACF
Sbjct: 28  VFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACF 87

Query: 88  QIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQY 147
           +IKCVNDP+WCH GNPS+FVTATNFCPPN A P+DNGGWCNPPR HFDL+MP+FLKIA+Y
Sbjct: 88  EIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEY 147

Query: 148 RAGIVPVSFRR 159
           RAGIVP+S+RR
Sbjct: 148 RAGIVPISYRR 158

[Close]
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.3e-67
Identity = 110/132 (83.33%), Postives = 123/132 (93.18%), Query Frame = 1 

Query: 27  GVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGAC 86
           G+Y GG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G SCGAC
Sbjct: 24  GIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGAC 83

Query: 87  FQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQ 146
           F++KC NDPQWCH+G+PSI +TATNFCPPN A P+DNGGWCNPPR HFDL+MP+FLKIAQ
Sbjct: 84  FELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ 143

Query: 147 YRAGIVPVSFRR 159
           YRAGIVPVS+RR
Sbjct: 144 YRAGIVPVSYRR 155

[Close]
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 111/132 (84.09%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 27  GVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGAC 86
           GVY GGPWQ+AHATFYGG+DASGTMGGACGYGNLYSQGYGVNTAALSTALFN+G SCGAC
Sbjct: 29  GVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGAC 88

Query: 87  FQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQ 146
           F+IKC +DP+WC  GNPSI VTATNFCPPN+A P+D+GGWCNPPR HFDL+MPMFLKI  
Sbjct: 89  FEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGL 148

Query: 147 YRAGIVPVSFRR 159
           YRAGIVPVS+RR
Sbjct: 149 YRAGIVPVSYRR 160

[Close]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match: A0A0A0KNX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517210 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.9e-74
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 1 

Query: 1   MAATVSTALL----SFLLIMSLAVECRQH-NGVYGGGPWQSAHATFYGGNDASGTMGGAC 60
           M  T+ST  L    +FLL MSL  E R    G++G GPW +AHATFYGGNDA+GTMGGAC
Sbjct: 1   MVPTISTIFLISFSNFLLTMSLPFENRALIGGLHGAGPWHNAHATFYGGNDAAGTMGGAC 60

Query: 61  GYGNLYSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPP 120
           GYGNLYSQGYGVNTAALSTALFNDG SCGACF+IKCVNDPQWCHAGNPSIFVTATNFCPP
Sbjct: 61  GYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPP 120

Query: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR
Sbjct: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 163

[Close]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match: A0A0D2VS58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266000 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.3e-71
Identity = 126/149 (84.56%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 10  LSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNT 69
           L +L+I+S AVE R   GVY GG WQSAHATFYGGNDASGTMGGACG+GNLYSQGYGVNT
Sbjct: 9   LVYLIIISTAVEARIP-GVYSGGAWQSAHATFYGGNDASGTMGGACGFGNLYSQGYGVNT 68

Query: 70  AALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNP 129
           AALSTALFN+G SCGACF+IKC NDPQWCH+G+PSIF+TATNFCPPNYALPNDNGGWCNP
Sbjct: 69  AALSTALFNNGFSCGACFEIKCANDPQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNP 128

Query: 130 PRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PR HFDL+MPMFLKIA+YRAGIVPVS+RR
Sbjct: 129 PRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match: A0A0B0Q241_GOSAR (Expansin-A4-like protein OS=Gossypium arboreum GN=F383_05290 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.1e-70
Identity = 125/149 (83.89%), Postives = 137/149 (91.95%), Query Frame = 1 

Query: 10  LSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNT 69
           L +L+I+S AVE R   G Y GG WQSAHATFYGGNDASGTMGGACGYGNLYSQGYGV+T
Sbjct: 9   LVYLIIISTAVEARIP-GFYSGGEWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVST 68

Query: 70  AALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNP 129
           AALSTALFN+G SCGACF+IKC NDPQWCH+G+PSIF+TATNFCPPNYALPNDNGGWCNP
Sbjct: 69  AALSTALFNNGFSCGACFEIKCANDPQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNP 128

Query: 130 PRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PR HFDL+MPMFLKIA+YRAGIVPVS+RR
Sbjct: 129 PRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match: A0A0B2QD56_GLYSO (Expansin-A3 OS=Glycine soja GN=glysoja_017975 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.1e-70
Identity = 125/155 (80.65%), Postives = 139/155 (89.68%), Query Frame = 1 

Query: 8   ALLSFLLIMSLAV----ECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQ 67
           A+L+ + I+SL +       +  GVY GGPWQSAHATFYGG+DASGTMGGACGYGNLYSQ
Sbjct: 2   AMLNIIAIVSLLLLIIPSQAKIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ 61

Query: 68  GYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDN 127
           GYGVNTAALSTALFN+G SCGACF+IKC +DP+WCH GNPSIFVTATNFCPPNYALP+DN
Sbjct: 62  GYGVNTAALSTALFNNGFSCGACFEIKCTDDPKWCHPGNPSIFVTATNFCPPNYALPSDN 121

Query: 128 GGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           GGWCNPPRPHFDL+MPMFLKIAQYRAGIVPVS+RR
Sbjct: 122 GGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match: A0A0A0KC92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190340 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.1e-69
Identity = 125/156 (80.13%), Postives = 137/156 (87.82%), Query Frame = 1 

Query: 3   ATVSTALLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYS 62
           AT  +  +  LL  SL +E R   GVY GGPWQSAHATFYGG+DASGTMGGACGYGNLYS
Sbjct: 2   ATPFSLCIPLLLSFSLLIEARIP-GVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 61

Query: 63  QGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPND 122
           QGYGVNTAALSTALFN G SCGACF+IKC NDP+WCH+G+PSI +TATNFCPPNYALPND
Sbjct: 62  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 121

Query: 123 NGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           NGGWCNPPR HFDL+MPMFLKIA+YRAGIVPVS+RR
Sbjct: 122 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match: AT2G28950.1 (AT2G28950.1 expansin A6)

HSP 1 Score: 259.2 bits (661), Expect = 1.6e-69
Identity = 116/150 (77.33%), Postives = 135/150 (90.00%), Query Frame = 1 

Query: 9   LLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVN 68
           L+  +L   LA+   +  GVY GG W++AHATFYGG+DASGTMGGACGYGNLYSQGYGVN
Sbjct: 6   LVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65

Query: 69  TAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCN 128
           TAALSTALFN+G SCGACF++KC +DP+WCH+G+PSIF+TATNFCPPN+A P+DNGGWCN
Sbjct: 66  TAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCN 125

Query: 129 PPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PPRPHFDL+MPMFLKIA+YRAGIVPVSFRR
Sbjct: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match: AT2G39700.1 (AT2G39700.1 expansin A4)

HSP 1 Score: 254.2 bits (648), Expect = 5.2e-68
Identity = 110/132 (83.33%), Postives = 123/132 (93.18%), Query Frame = 1 

Query: 27  GVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGAC 86
           G+Y GG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G SCGAC
Sbjct: 24  GIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGAC 83

Query: 87  FQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQ 146
           F++KC NDPQWCH+G+PSI +TATNFCPPN A P+DNGGWCNPPR HFDL+MP+FLKIAQ
Sbjct: 84  FELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ 143

Query: 147 YRAGIVPVSFRR 159
           YRAGIVPVS+RR
Sbjct: 144 YRAGIVPVSYRR 155

[Close]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match: AT3G55500.1 (AT3G55500.1 expansin A16)

HSP 1 Score: 254.2 bits (648), Expect = 5.2e-68
Identity = 110/131 (83.97%), Postives = 122/131 (93.13%), Query Frame = 1 

Query: 28  VYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACF 87
           V+ GG WQ+AHATFYGGNDASGTMGGACGYGNLYSQGYG NTAALST+LFN G SCGACF
Sbjct: 28  VFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACF 87

Query: 88  QIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQY 147
           +IKCVNDP+WCH GNPS+FVTATNFCPPN A P+DNGGWCNPPR HFDL+MP+FLKIA+Y
Sbjct: 88  EIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEY 147

Query: 148 RAGIVPVSFRR 159
           RAGIVP+S+RR
Sbjct: 148 RAGIVPISYRR 158

[Close]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match: AT2G37640.1 (AT2G37640.1 Barwin-like endoglucanases superfamily protein)

HSP 1 Score: 250.4 bits (638), Expect = 7.5e-67
Identity = 111/132 (84.09%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 27  GVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGAC 86
           GVY GGPWQ+AHATFYGG+DASGTMGGACGYGNLYSQGYGVNTAALSTALFN+G SCGAC
Sbjct: 29  GVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGAC 88

Query: 87  FQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQ 146
           F+IKC +DP+WC  GNPSI VTATNFCPPN+A P+D+GGWCNPPR HFDL+MPMFLKI  
Sbjct: 89  FEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGL 148

Query: 147 YRAGIVPVSFRR 159
           YRAGIVPVS+RR
Sbjct: 149 YRAGIVPVSYRR 160

[Close]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match: AT5G02260.1 (AT5G02260.1 expansin A9)

HSP 1 Score: 236.5 bits (602), Expect = 1.1e-62
Identity = 110/158 (69.62%), Postives = 130/158 (82.28%), Query Frame = 1 

Query: 1   MAATVSTALLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNL 60
           MAA V T +   +++++      +  GVY GGPW +AHATFYG  DASGTMGGACGYGNL
Sbjct: 1   MAAKVITFMA--VMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNL 60

Query: 61  YSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALP 120
           YSQGYGVNTAALSTALFN+G SCG+CF++KC+NDP WC  GNPSI +TATNFCPPN+   
Sbjct: 61  YSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQA 120

Query: 121 NDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           +DNGGWCNPPR HFDL+MPMFL IA+Y+AGIVPVS+RR
Sbjct: 121 SDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match: gi|659117935|ref|XP_008458865.1| (PREDICTED: expansin-A4 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 140/163 (85.89%), Postives = 147/163 (90.18%), Query Frame = 1 

Query: 1   MAATVSTALL----SFLLIMSLAVECRQH-NGVYGGGPWQSAHATFYGGNDASGTMGGAC 60
           MA T+ST  L    +FLL MSL +E R    G+YG GPWQ+AHATFYGGNDA+GTMGGAC
Sbjct: 1   MAPTISTIFLILFSNFLLTMSLPIENRALIGGLYGAGPWQNAHATFYGGNDAAGTMGGAC 60

Query: 61  GYGNLYSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPP 120
           GYGNLYSQGYGVNTAALSTALFNDG SCGACF+IKCVNDPQWCHAGNPSIFVTATNFCPP
Sbjct: 61  GYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPP 120

Query: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR
Sbjct: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 163

[Close]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match: gi|700196146|gb|KGN51323.1| (hypothetical protein Csa_5G517210 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.7e-74
Identity = 137/163 (84.05%), Postives = 144/163 (88.34%), Query Frame = 1 

Query: 1   MAATVSTALL----SFLLIMSLAVECRQH-NGVYGGGPWQSAHATFYGGNDASGTMGGAC 60
           M  T+ST  L    +FLL MSL  E R    G++G GPW +AHATFYGGNDA+GTMGGAC
Sbjct: 1   MVPTISTIFLISFSNFLLTMSLPFENRALIGGLHGAGPWHNAHATFYGGNDAAGTMGGAC 60

Query: 61  GYGNLYSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPP 120
           GYGNLYSQGYGVNTAALSTALFNDG SCGACF+IKCVNDPQWCHAGNPSIFVTATNFCPP
Sbjct: 61  GYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPP 120

Query: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR
Sbjct: 121 NYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 163

[Close]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match: gi|823241114|ref|XP_012453171.1| (PREDICTED: expansin-A4-like [Gossypium raimondii])

HSP 1 Score: 275.4 bits (703), Expect = 6.2e-71
Identity = 126/149 (84.56%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 10  LSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNT 69
           L +L+I+S AVE R   GVY GG WQSAHATFYGGNDASGTMGGACG+GNLYSQGYGVNT
Sbjct: 9   LVYLIIISTAVEARIP-GVYSGGAWQSAHATFYGGNDASGTMGGACGFGNLYSQGYGVNT 68

Query: 70  AALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNP 129
           AALSTALFN+G SCGACF+IKC NDPQWCH+G+PSIF+TATNFCPPNYALPNDNGGWCNP
Sbjct: 69  AALSTALFNNGFSCGACFEIKCANDPQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNP 128

Query: 130 PRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PR HFDL+MPMFLKIA+YRAGIVPVS+RR
Sbjct: 129 PRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match: gi|728850513|gb|KHG29956.1| (Expansin-A4 -like protein [Gossypium arboreum])

HSP 1 Score: 273.1 bits (697), Expect = 3.1e-70
Identity = 125/149 (83.89%), Postives = 137/149 (91.95%), Query Frame = 1 

Query: 10  LSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNT 69
           L +L+I+S AVE R   G Y GG WQSAHATFYGGNDASGTMGGACGYGNLYSQGYGV+T
Sbjct: 9   LVYLIIISTAVEARIP-GFYSGGEWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVST 68

Query: 70  AALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNP 129
           AALSTALFN+G SCGACF+IKC NDPQWCH+G+PSIF+TATNFCPPNYALPNDNGGWCNP
Sbjct: 69  AALSTALFNNGFSCGACFEIKCANDPQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNP 128

Query: 130 PRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           PR HFDL+MPMFLKIA+YRAGIVPVS+RR
Sbjct: 129 PRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match: gi|720003184|ref|XP_010256907.1| (PREDICTED: expansin-A4 [Nelumbo nucifera])

HSP 1 Score: 272.7 bits (696), Expect = 4.0e-70
Identity = 125/158 (79.11%), Postives = 138/158 (87.34%), Query Frame = 1 

Query: 1   MAATVSTALLSFLLIMSLAVECRQHNGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNL 60
           MA      + + LLI  L +   +  GVY GGPWQSAHATFYGG+DASGTMGGACGYGNL
Sbjct: 1   MATATVNVVSAVLLISFLTLVDARIPGVYTGGPWQSAHATFYGGSDASGTMGGACGYGNL 60

Query: 61  YSQGYGVNTAALSTALFNDGSSCGACFQIKCVNDPQWCHAGNPSIFVTATNFCPPNYALP 120
           YSQGYGVNTAALSTALFN G SCGACF+IKC NDPQWCH+G+PSIF+TATNFCPPNYALP
Sbjct: 61  YSQGYGVNTAALSTALFNAGLSCGACFEIKCANDPQWCHSGSPSIFITATNFCPPNYALP 120

Query: 121 NDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRR 159
           NDNGGWCNPPRPHFDL+MPMFLKIA+YRAGIVPV++RR
Sbjct: 121 NDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 158

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXPA6_ARATH2.9e-6877.33Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2[more]
EXPA7_ORYSJ3.2e-6785.07Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1[more]
EXP16_ARATH9.3e-6783.97Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1[more]
EXPA4_ARATH9.3e-6783.33Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1[more]
EXPA3_ARATH1.3e-6584.09Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1[more]
BLAST of Cp4.1LG01g23750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNX4_CUCSA1.9e-7484.05Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517210 PE=4 SV=1[more]
A0A0D2VS58_GOSRA4.3e-7184.56Uncharacterized protein OS=Gossypium raimondii GN=B456_011G266000 PE=4 SV=1[more]
A0A0B0Q241_GOSAR2.1e-7083.89Expansin-A4-like protein OS=Gossypium arboreum GN=F383_05290 PE=4 SV=1[more]
A0A0B2QD56_GLYSO8.1e-7080.65Expansin-A3 OS=Glycine soja GN=glysoja_017975 PE=4 SV=1[more]
A0A0A0KC92_CUCSA1.1e-6980.13Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190340 PE=4 SV=1[more]
BLAST of Cp4.1LG01g23750 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28950.11.6e-6977.33 expansin A6[more]
AT2G39700.15.2e-6883.33 expansin A4[more]
AT3G55500.15.2e-6883.97 expansin A16[more]
AT2G37640.17.5e-6784.09 Barwin-like endoglucanases superfamily protein[more]
AT5G02260.11.1e-6269.62 expansin A9[more]
BLAST of Cp4.1LG01g23750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117935|ref|XP_008458865.1|2.2e-7685.89PREDICTED: expansin-A4 [Cucumis melo][more]
gi|700196146|gb|KGN51323.1|2.7e-7484.05hypothetical protein Csa_5G517210 [Cucumis sativus][more]
gi|823241114|ref|XP_012453171.1|6.2e-7184.56PREDICTED: expansin-A4-like [Gossypium raimondii][more]
gi|728850513|gb|KHG29956.1|3.1e-7083.89Expansin-A4 -like protein [Gossypium arboreum][more]
gi|720003184|ref|XP_010256907.1|4.0e-7079.11PREDICTED: expansin-A4 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR007118Expan_Lol_pI
IPR007112Expansin/allergen_DPBB_dom
IPR002963Expansin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g23750.1Cp4.1LG01g23750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 105..115
score: 4.2E-39coord: 124..141
score: 4.2E-39coord: 64..78
score: 4.2E-39coord: 141..154
score: 4.2E-39coord: 91..102
score: 4.2
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 69..156
score: 1.2
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 52..158
score: 28
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 33..48
score: 3.5E-33coord: 73..91
score: 3.5E-33coord: 51..69
score: 3.5E-33coord: 149..158
score: 3.5
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 27..158
score: 1.3
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 69..155
score: 3.3
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 33..158
score: 1.95
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..158
score: 1.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g23750CmaCh04G026550Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g23750CmoCh04G027780Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g23750Lsi02G016250Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g23750MELO3C021619.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g23750CsaV3_5G026750Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g23750CsaV3_4G025050Cucumber (Chinese Long) v3cpecucB0502
Cp4.1LG01g23750Bhi06G000521Wax gourdcpewgoB0502
Cp4.1LG01g23750Bhi10G000574Wax gourdcpewgoB0541
Cp4.1LG01g23750CsGy5G017510Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g23750Carg04492Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g23750Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g23750Cucumber (Gy14) v1cgycpeB0522
Cp4.1LG01g23750Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g23750Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g23750Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g23750Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g23750Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g23750Watermelon (97103) v1cpewmB381
Cp4.1LG01g23750Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g23750Silver-seed gourdcarcpeB0374