Cp4.1LG01g23600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g23600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pre-rRNA-processing protein esf2
Location	Cp4.1LG01 : 19520056 .. 19523638 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTCCCCGGGGTTTTCTTCGCTCATTCACTTTGCGGTGCCCTTGTTCTTAATCTCGGGCGGCTGCTAGCTCTTTTATCTCCGCATTGCAATCCGATTGCTGCAGTAGTTTCATCGGAATCAACTCAATCTCCGTTGTTCGTTTGTTCATCCGAAACAGTTGCAGAGCTTGTTTCGTCTCTTCATTCGCGCCGCTCACTGTCGACCATTGTTTCTGTCCCTCGCACGCGTAACAGGTTCTTCTCATAAATCTCTCTCTGTTGTTCGGAACTCACTATCTCTTACTGTTCCTCTAGGCTTACGCGCAGTAAACATATTTGGTAGCAGAATTGGATTCTGTACTGAATGTCTTAATTAGGGTTCTGTTCGATTAGAAAAATCAGCAGTGGATTAATGAAAGGTAGTTTGTGTAGTGTGAGTAATTCATGTGTGCGACAATAGAGCTCTGATGTTATACATATTTTTCTTATAGCTGCAATGCTTTTTTAGTTATTGTATTTGTTACTTGAGGTTGTTTATCTTGTCTTGTAGTTAGGATGCCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACTGATTGTAGCCCGGAATCTAGTAAGAAATTAAAGGGAAGTAAAAAGAAGAAGAAGCAGTTATTGGTGGAAGGTGTAGATGTCATGGAAAGGAATGTGGAAGGATCTGTTGAGCTGTGGGAAAGCAACATAAACTCTGAAGTGAAAAATAAGAAAAAGAGAAAGAAGAGTACTAAACAATGTGTAGTGGAGAACTCTATCCAGGCTGAGGCAGGAGAATATGAAATTAAAGCAGAGAGATCTGTGAAAGAGGGCAGTCCTTTGTCTGATGGTGGAAGTGAGAAAAATGAAATTCTTGAGGAGAGGCAATTTGCGTTCGAAGATGATGAGAATGAAAGGGCAGACAGCATAGTTAGAGAAACATCTGGAGAGAAGATTTTAGAGTCTAACAATGGTAAAACAGATCAAAGGAATATGAAGAGGAAGAAACGACTCTTAAAGGAAGTTGCAAATGCGGACATGCGTGGAATTTGTTACTTGAGCCGTGTTCCTCCACATATGGATCCTTTGAAACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAAGGTAATGAATAATTATACAAATATTTGCCTTTTCTCTTAGTTTTACTGTTGCTTCAAAATTTGGGTTGCATATTCGTTTGTTCTTTTGTTCAATTTCTGTCATTTAGTTTAGAAGGAATTGTATTCTATTTTACTCATTCAAGGTAATTCATGCATTCATGTTCAGACGCTGCAAATCAAGTAAAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGGTATACTCACATTTCTGACAACTTTTATTTTTTCAAATTTATATGAAGTTAATGGTTAGTGCATGCCCTTGAAGATGCTTGGCTTGTCAAAGGGGTTAGTTTTAGTTACTGATCTGTATTTTCCTTATACGTGCTATGCAGATGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATACGTTAAATGGCGAACAAATAGGTAAACTTTTATTCGTATATGCATGCTTGTATCTGACATCCTGGCTCGATACATGACTTCTGCTTTCTCTTTGGGGGATGATGGAAGTCGTATTGGGCTGGTCTAGAGAGCCCTGTTCTTCAGCATAAGAAAATTAATTCTCCTATGGCATGCATTAGGTGCTTCATAATCAATTTGATCGGGGTTATGTTTACCAATTACCATGCCCTGCTCTTGAACATTTTTATAATAAAAGATTTCTGAAGTTTCTTTATGTTCTTAGTCGTTTCTCTACCTGTTTTACATTTTCTTAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAATATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGGTACACACCTCAAAGACTTGATCCTGCCCCATTTTAGTTTACAACACTGTTACTGATGTTGAATATTTTGCAGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCTCGAGCATTGAAATCCATTGAAGAACGGCTAAAGAAGGTACATTGAAAAGCCTCTCTGAAATATTACATGCATCACTATCTCAGCATGCACTCTTAATATCTTTGACATTTTGGGGATTTAGGGTTGGTTTGGTAGGCAATCTGAAAACAAAATTTTGAAAACAAGGGATTCAATGAAATACTATATTTACTTAAAATTTATATTTTTTTAATATGATTTAAATCAAAACCTTGATACAATGAAAATATAGAAACGTTGTTTTCAGAATTTTCACTACTTAGATCATATAATTCGAAAACAATTTTTAAAATTACATTTTTTAAATGCCCATTCACCTAAGTTAACTCATTGAATTTGAAGACATAAAAAAGGCTCCAAAGTGCCCGCTAAACCGGCCTTGTAACTATCAGTTGAGTTTGTTCATCATAGTGAGCTTGGGAAATACAAACACTTACCCTCTTTTTATGATGGTCTACAGAAGCAGAATTTGCGAGAAGATTCAGAAATGAATTCTGAACTTGCTGATAGCCAGAAACTCCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAAATTCTGCAGTACAAGACAAACCAAAACTATCTACAAATTTCCTTGCTGGGGTAAGTAATAACGTATTATTTACAACCAAACCTCGTCTCATTCTCATGTTTTACCTACAGTCATGTTATCAGATTTTATCTTGTGAATCTTTGTTCATTTGGTATCATCTTTGAAATGGTAATACATATTTTTAACTCTATATTTTTTCAAATTCTACAAATAGTGTTTGTATTGCCCACTTGTCGGCAACTCAACTATAAGAGGTTAAAGGTTCACCCATTGAATTCAAAAAAATGAAATAATGTTCCTATTAGTAGTAGTAGTAGTAGTAGTAGTCAATTAGTTGTTTATTCAAAAGTATGTTATTTAAAAGCATGTCAAACTCTCATTAAATGATAACCCAGAATTCTCTCTTCATTGAATCTGTTAGAATTTATTTATACCTTTTTATAACACCAAGGTCTTGGCTATTTTCTCCTCTTCTGCAGGTGTTTGGAGGTTCCTAGTCCTCCAATTTCCGAATGCTAGTAAAGAGATGTACGCCGAGGGGTTTACTACGTAGGGACACTATGGCCTTTTGGTAGGCAGAGCCAATCAAATCTTTGACATATCAATTTATTTGTGGATGCAAGAATGTGGAGGAGTTGTTGTAGCATTCTATATTTGAAGCAATTCTTTTTGCATTTCATAATTTGTGAAGCATATAGGTCCATCTATTTATTTGTGGATGTTAGTATTTATGGTAGTCTCATAGCCCAAAGGTGGCTAGACCGTTGATTTATGCACACAAATGCACAAATTCACGTCTAGAAATCTAAACTTAGTTTGATCGATTGATTCAAATATATATCTTTGATGAAAAGATTAAATATTTGAATA

mRNA sequence

GATTTCCCCGGGGTTTTCTTCGCTCATTCACTTTGCGGTGCCCTTGTTCTTAATCTCGGGCGGCTGCTAGCTCTTTTATCTCCGCATTGCAATCCGATTGCTGCAGTAGTTTCATCGGAATCAACTCAATCTCCGTTGTTCGTTTGTTCATCCGAAACAGTTGCAGAGCTTGTTTCGTCTCTTCATTCGCGCCGCTCACTGTCGACCATTGTTTCTGTCCCTCGCACGCTTAGGATGCCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACTGATTGTAGCCCGGAATCTAGTAAGAAATTAAAGGGAAGTAAAAAGAAGAAGAAGCAGTTATTGGTGGAAGGTGTAGATGTCATGGAAAGGAATGTGGAAGGATCTGTTGAGCTGTGGGAAAGCAACATAAACTCTGAAGTGAAAAATAAGAAAAAGAGAAAGAAGAGTACTAAACAATGTGTAGTGGAGAACTCTATCCAGGCTGAGGCAGGAGAATATGAAATTAAAGCAGAGAGATCTGTGAAAGAGGGCAGTCCTTTGTCTGATGGTGGAAGTGAGAAAAATGAAATTCTTGAGGAGAGGCAATTTGCGTTCGAAGATGATGAGAATGAAAGGGCAGACAGCATAGTTAGAGAAACATCTGGAGAGAAGATTTTAGAGTCTAACAATGGTAAAACAGATCAAAGGAATATGAAGAGGAAGAAACGACTCTTAAAGGAAGTTGCAAATGCGGACATGCGTGGAATTTGTTACTTGAGCCGTGTTCCTCCACATATGGATCCTTTGAAACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAAGACGCTGCAAATCAAGTAAAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATACGTTAAATGGCGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAATATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCTCGAGCATTGAAATCCATTGAAGAACGGCTAAAGAAGAAGCAGAATTTGCGAGAAGATTCAGAAATGAATTCTGAACTTGCTGATAGCCAGAAACTCCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAAATTCTGCAGTACAAGACAAACCAAAACTATCTACAAATTTCCTTGCTGGGGTGTTTGGAGGTTCCTAGTCCTCCAATTTCCGAATGCTAGTAAAGAGATGTACGCCGAGGGGTTTACTACGTAGGGACACTATGGCCTTTTGGTAGGCAGAGCCAATCAAATCTTTGACATATCAATTTATTTGTGGATGCAAGAATGTGGAGGAGTTGTTGTAGCATTCTATATTTGAAGCAATTCTTTTTGCATTTCATAATTTGTGAAGCATATAGGTCCATCTATTTATTTGTGGATGTTAGTATTTATGGTAGTCTCATAGCCCAAAGGTGGCTAGACCGTTGATTTATGCACACAAATGCACAAATTCACGTCTAGAAATCTAAACTTAGTTTGATCGATTGATTCAAATATATATCTTTGATGAAAAGATTAAATATTTGAATA

Coding sequence (CDS)

GATTTCCCCGGGGTTTTCTTCGCTCATTCACTTTGCGGTGCCCTTGTTCTTAATCTCGGGCGGCTGCTAGCTCTTTTATCTCCGCATTGCAATCCGATTGCTGCAGTAGTTTCATCGGAATCAACTCAATCTCCGTTGTTCGTTTGTTCATCCGAAACAGTTGCAGAGCTTGTTTCGTCTCTTCATTCGCGCCGCTCACTGTCGACCATTGTTTCTGTCCCTCGCACGCTTAGGATGCCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACTGATTGTAGCCCGGAATCTAGTAAGAAATTAAAGGGAAGTAAAAAGAAGAAGAAGCAGTTATTGGTGGAAGGTGTAGATGTCATGGAAAGGAATGTGGAAGGATCTGTTGAGCTGTGGGAAAGCAACATAAACTCTGAAGTGAAAAATAAGAAAAAGAGAAAGAAGAGTACTAAACAATGTGTAGTGGAGAACTCTATCCAGGCTGAGGCAGGAGAATATGAAATTAAAGCAGAGAGATCTGTGAAAGAGGGCAGTCCTTTGTCTGATGGTGGAAGTGAGAAAAATGAAATTCTTGAGGAGAGGCAATTTGCGTTCGAAGATGATGAGAATGAAAGGGCAGACAGCATAGTTAGAGAAACATCTGGAGAGAAGATTTTAGAGTCTAACAATGGTAAAACAGATCAAAGGAATATGAAGAGGAAGAAACGACTCTTAAAGGAAGTTGCAAATGCGGACATGCGTGGAATTTGTTACTTGAGCCGTGTTCCTCCACATATGGATCCTTTGAAACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAAGACGCTGCAAATCAAGTAAAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATACGTTAAATGGCGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAATATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCTCGAGCATTGAAATCCATTGAAGAACGGCTAAAGAAGAAGCAGAATTTGCGAGAAGATTCAGAAATGAATTCTGAACTTGCTGATAGCCAGAAACTCCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAAATTCTGCAGTACAAGACAAACCAAAACTATCTACAAATTTCCTTGCTGGGGTGTTTGGAGGTTCCTAG

Protein sequence

DFPGVFFAHSLCGALVLNLGRLLALLSPHCNPIAAVVSSESTQSPLFVCSSETVAELVSSLHSRRSLSTIVSVPRTLRMPKEESFEVNLTTDCSPESSKKLKGSKKKKKQLLVEGVDVMERNVEGSVELWESNINSEVKNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQFAFEDDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAGVFGGS

Homology

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BLAST of Cp4.1LG01g23600 vs. Swiss-Prot
Match: ESF2_SCHPO (Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf2 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-37
Identity = 107/282 (37.94%), Postives = 154/282 (54.61%), Query Frame = 1


Query: 160 EAGEYEIKAERSVKEGSPLSDGGSEKNEI----LEERQFAFEDDENERADSIVRETSG-E 219
           E  E  +KA RS +   P+ D    K+E     LEER      D   R  +   ETS  E
Sbjct: 25  EEDERFLKAIRSSRSTKPVVDVLKVKSESSADELEERDAHL--DRFRRDSTFESETSDHE 84

Query: 220 KILESNNGKTDQRNMKR----KKRLLKEVANA----DMRGICYLSRVPPHMDPLKLRQIL 279
                +  + D+   K     KK  L+EV          G+ YLSR+PP+M P KLRQIL
Sbjct: 85  DFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQIL 144

Query: 280 SQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGG 339
           SQYG+I R+YL PE +A + +R R GG +   + EGW+EF  KRVAK VA  LN  QIGG
Sbjct: 145 SQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMYEEGWIEFESKRVAKSVAELLNTNQIGG 204

Query: 340 RKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKS 399
           +K S ++ D+WN+KYL KFKW  LTE+ A ++A RE ++ +EI   +++   Y+  V+ +
Sbjct: 205 KKSSWYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENA 264

Query: 400 RALKSIEERLKKKQNLREDSEMNSE---LADSQKLPKLIRNF 426
           + ++ I ++  ++  L   +E   E   L++  K  K  R F
Sbjct: 265 KMIEGIRKKRSERDTLNVSTEFPEETKDLSEDTKPSKQARRF 304

[Close]

BLAST of Cp4.1LG01g23600 vs. Swiss-Prot
Match: ESF2_GIBZE (Pre-rRNA-processing protein ESF2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=ESF2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-37
Identity = 99/280 (35.36%), Postives = 156/280 (55.71%), Query Frame = 1


Query: 174 EGSPLSDGGSEKNEILEERQFAFEDDENERADSIVRETSGEKILESNNGKTDQRNMKRKK 233
           E  P SD GS+  +   E+      +E+++ D   +     K   S       R + +K 
Sbjct: 47  EDDPGSDIGSDDEDEATEKDSKKTQEEDKKEDQPEKPKRKSKDTTSTELPDVTRTLTKKN 106

Query: 234 RLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGG 293
            +  E A     G+ YLSR+PP M P KLR +L  YG I RI+LAPED A+  +R RAGG
Sbjct: 107 LVASEAA-IKKSGVVYLSRIPPFMKPAKLRSLLEPYGTINRIFLAPEDPASHARRVRAGG 166

Query: 294 FRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEE 353
            + + ++EGWVEFT K+ AK V + LN   IGG+K S ++ DLWN+ YL  FKW +LTE+
Sbjct: 167 NKKRSYTEGWVEFTKKKDAKAVCDLLNARTIGGKKGSYYHDDLWNLLYLKGFKWHNLTEQ 226

Query: 354 TAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELA 413
            A ++A R  +M  EIS + +E   ++  V+K++ L  +  + K K   +  +E ++E  
Sbjct: 227 IAAENAERSSRMRAEISKSTKENKEFVRNVEKAKMLDGMAVKAKAK---KRKAETHTEGQ 286

Query: 414 DSQKLPKLIRNFPQTQPVANSAV--QDKPKLSTNFLAGVF 452
           + + + ++ R+F Q  P+A   +  +D+P   T  L+ +F
Sbjct: 287 EDESVRQVKRSFKQV-PLAKKKMDGEDQPAEVTRVLSKIF 321

[Close]

BLAST of Cp4.1LG01g23600 vs. Swiss-Prot
Match: ESF2_DEBHA (Pre-rRNA-processing protein ESF2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ESF2 PE=3 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-36
Identity = 94/261 (36.02%), Postives = 156/261 (59.77%), Query Frame = 1


Query: 185 KNEILEERQFAFEDDENERADSIVRETS--GEKILESNNGKTDQRNMKR--KKRLLKEVA 244
           KNE  E+     E+D NE  D +   T    E+ +E N+ +    N+K+   ++L KE  
Sbjct: 37  KNEESED-----EEDLNEEDDDLFMNTDIIDEETIE-NSKQAKNINLKKLTPEQLAKEQK 96

Query: 245 NADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFS 304
                G+CYLS++PP+M P KLR +LS++G+I R++L PED +   KR + GG + + ++
Sbjct: 97  KIKKTGVCYLSKIPPYMKPAKLRSVLSRFGKIDRLFLKPEDNSTYTKRVKYGGNKKKNYT 156

Query: 305 EGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAI 364
            GWVEF +K+ AK  A TLNG ++GG+K S +Y D+ NIKYLS FKW DLT++ A ++ I
Sbjct: 157 AGWVEFINKKDAKLCAGTLNGNKLGGKKSSYYYDDIINIKYLSAFKWFDLTQQIAKENEI 216

Query: 365 REQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPK 424
           R+ K+++E+S  ++    +++ V+KS+ + +++ + K +Q        N E +D ++  K
Sbjct: 217 RQAKLSMELSQQQKLNKSFINNVEKSKMINNMQNKRKARQAESGADNSNKEESDIRRNLK 276

Query: 425 LIRNFPQTQPVANSAVQDKPK 442
             R    T+  A   ++ K K
Sbjct: 277 Q-RKLASTRADAEDELKHKSK 290

[Close]

BLAST of Cp4.1LG01g23600 vs. Swiss-Prot
Match: ESF2_PICST (Pre-rRNA-processing protein ESF2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=ESF2 PE=3 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-35
Identity = 108/348 (31.03%), Postives = 188/348 (54.02%), Query Frame = 1


Query: 118 VMERNVEGSVELWESNINSEVKNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSP 177
           ++ R+ E   E ++S+  S+V+N            V  +I+ +    ++  +    E   
Sbjct: 17  IITRDTESGFE-YDSDSESDVEN------------VFPNIRVQRIRDKLYQDEDEDEDEQ 76

Query: 178 LSDGGSEKNEILEERQFAFEDDENERADSIVRETSGEKILESNNGKT----------DQR 237
           + D   E  E  E+ +   ++ ENE  + +     G+ +   + G++          +++
Sbjct: 77  VDDEDEEDEEDKEDEEDDADNFENENEEEVDDYIDGDGMRNFDMGESIEVGDVDSTSERK 136

Query: 238 NMKRKK----RLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAA 297
           N K KK    +L KE       G+CYLSR+PP+M P  LR ILS++G+I R++L PED+A
Sbjct: 137 NGKIKKLTSRQLQKEQKRIKRTGVCYLSRIPPYMKPATLRSILSRFGKIDRLFLKPEDSA 196

Query: 298 NQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLWNIKYLS 357
              KR + GG + + F+EGWVEF +K+ AK  A+TLN  ++GGRK S +Y D+ N+KYLS
Sbjct: 197 IYHKRVKYGGNKKKNFTEGWVEFVNKKDAKMCASTLNANKLGGRKTSYYYDDVINMKYLS 256

Query: 358 KFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQNLR 417
            FKW DLT++ A ++ +R+ K++LE+S  ++    +++ V+KS+ + +I+ + K++    
Sbjct: 257 GFKWFDLTQQIAKENEVRQAKLSLELSQQQKLNKTFVNNVEKSKLVSTIQRKRKERD--- 316

Query: 418 EDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAGVF 452
            + E +S +  S K  K+            +  Q   KLS + L+ VF
Sbjct: 317 PEHESDSHIRRSFKQRKVTSTRADADEELKARAQPDRKLS-DVLSKVF 347

[Close]

BLAST of Cp4.1LG01g23600 vs. Swiss-Prot
Match: ESF2_CANAL (Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ESF2 PE=3 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 4.1e-35
Identity = 101/281 (35.94%), Postives = 160/281 (56.94%), Query Frame = 1


Query: 131 ESNINSEVKNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILE 190
           ES+  SE +N  + K    +    +   A   + E  +E   +E     D G  K +  +
Sbjct: 8   ESDFESEDENNFQDKVFNVKSKTSSFFHANTSDNEDFSED--EEDKDEQDEGDTKTKP-K 67

Query: 191 ERQFAFEDD--ENERADSIVRETSGEKILESNNGKTDQRNMKR--KKRLLKEVANADMRG 250
           + +  FED   + E  ++I  +  G   L  + G    + +K+   K L KE       G
Sbjct: 68  DGKHNFEDIAYDEESEENIGDDEDGNADLSLDGGSKVNKKLKKLTSKELAKEQKRIKRTG 127

Query: 251 ICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEF 310
           +CYLSRVPP+M P KLR +LS++GEI R++L PED +   KR + GG + + F+EGW+EF
Sbjct: 128 VCYLSRVPPYMKPAKLRSVLSRFGEIDRLFLKPEDPSVYHKRVKYGGNKKKNFTEGWIEF 187

Query: 311 TDKRVAKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMA 370
            +K  AK  A TLNG ++GG+K S +Y D+ NIKYL  FKW DLT++ A ++ +R+ K+A
Sbjct: 188 VNKSDAKLCAATLNGNKLGGKKTSYYYDDIINIKYLPGFKWLDLTQQIAKENEVRQAKLA 247

Query: 371 LEISAAKRERDFYLSKVDKSRALKSIEERLK--KKQNLRED 406
           +EIS  ++    ++S V+KS+ + +I+++ K     N+R D
Sbjct: 248 MEISQQQKLNKSFVSNVEKSKMIANIQKKRKTTDDDNIRRD 285

[Close]

BLAST of Cp4.1LG01g23600 vs. TrEMBL
Match: A0A0A0KUC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517890 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 8.7e-149
Identity = 295/383 (77.02%), Postives = 327/383 (85.38%), Query Frame = 1


Query: 79  MPKEESFEVNLTTDCSPESSKK-LKGSKKKKKQLLVEGVDVMERNVEGSVELWESNINSE 138
           M  EES EVNL TDCSPES KK  K  K K+KQLL++GVDVME    GSV+L ESN+N++
Sbjct: 1   MSNEESSEVNLKTDCSPESRKKRAKSRKNKRKQLLIKGVDVMEMKDVGSVQLGESNMNTD 60

Query: 139 V------KNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEE 198
                  K KKKRKKST+Q V E+ I+ EAGEYE +AE  +KE SP+S+ GSE     E+
Sbjct: 61  SDKVKKKKKKKKRKKSTQQRVEESFIKDEAGEYENRAETFMKEASPVSNSGSEI--FFEK 120

Query: 199 RQFAFEDDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLS 258
           R+ A ED ENER DSI+RE S  KILES+NGK +QR +KRKK+LLKE ANADMRGICYLS
Sbjct: 121 RKIALEDAENERTDSILRENSDGKILESDNGK-NQRKIKRKKQLLKEAANADMRGICYLS 180

Query: 259 RVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRV 318
           RVPPHMDPLKLRQILSQ+GEIQRIYLAPEDAA+QV+RKRAGGFRGQFFSEGWVEFTDKRV
Sbjct: 181 RVPPHMDPLKLRQILSQHGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRV 240

Query: 319 AKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISA 378
           AK+VAN LNGE IGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQK+ALEISA
Sbjct: 241 AKRVANMLNGEPIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISA 300

Query: 379 AKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPV 438
           AKRERDFYL+KVDKSRAL SIEERLKKKQ +REDSEMNS L DSQKLPKLIR+FPQTQPV
Sbjct: 301 AKRERDFYLAKVDKSRALNSIEERLKKKQKMREDSEMNSTLDDSQKLPKLIRSFPQTQPV 360

Query: 439 ANSAVQDKPKLSTNFLAGVFGGS 455
           A+ AVQ+KP+LSTN LAGVFG S
Sbjct: 361 ADFAVQNKPRLSTNVLAGVFGSS 380

[Close]

BLAST of Cp4.1LG01g23600 vs. TrEMBL
Match: D7SH86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00140 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.7e-91
Identity = 176/237 (74.26%), Postives = 198/237 (83.54%), Query Frame = 1


Query: 218 ESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYL 277
           E N+ K   R  K KKRLLKE + AD RG+CYLSR+PPHMD +KLR ILSQYGEIQRIYL
Sbjct: 107 EGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYL 166

Query: 278 APEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLW 337
           APED A QV RKRAGGFRGQ FSEGWVEFT K VAK+VA  LNGEQIGGRKRSSFYYDLW
Sbjct: 167 APEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLW 226

Query: 338 NIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLK 397
           NIKYLSKFKWDDLTEE AYK+AIREQK+ALE+SAAKRERDFYLSKVDKSRAL SIEERLK
Sbjct: 227 NIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLK 286

Query: 398 KKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAGVFGGS 455
           KKQ +++D+  N+E   + + PK+IR FPQ  P+A+ A + KP+LS + LAGVFGGS
Sbjct: 287 KKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAGVFGGS 343

[Close]

BLAST of Cp4.1LG01g23600 vs. TrEMBL
Match: A5BED4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022556 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 171/232 (73.71%), Postives = 193/232 (83.19%), Query Frame = 1


Query: 218 ESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYL 277
           E N+ K   R  K KKRLLKE + AD RG+CYLSR+PPHMD +KLR ILSQYGEIQRIYL
Sbjct: 20  EGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYL 79

Query: 278 APEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLW 337
           APED A QV RKRAGGFRGQ FSEGWVEFT K VAK+VA  LNGEQIGGRKRSSFYYDLW
Sbjct: 80  APEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLW 139

Query: 338 NIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLK 397
           NIKYLSKFKWDDLTEE AYK+AIREQK+ALE+SAAKRERDFYLSKVDKSRAL SIEERLK
Sbjct: 140 NIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLK 199

Query: 398 KKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAG 450
           KKQ +++D+  N+E   + + PK+IR FPQ  P+A+ A + KP+LS + LAG
Sbjct: 200 KKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAG 251

[Close]

BLAST of Cp4.1LG01g23600 vs. TrEMBL
Match: V4U1X3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015979mg PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 9.5e-87
Identity = 188/322 (58.39%), Postives = 229/322 (71.12%), Query Frame = 1


Query: 137 EVKNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQFAF 196
           E   +K+RKK     V E     E  E   + E ++K         S   EI E      
Sbjct: 11  ERSERKQRKKKENFFVKETGKTDEEEEEASRVENNLK---------SNVEEIGEADMIGK 70

Query: 197 EDDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPH 256
           E + N     ++ E   E++ E N+  +     K+K+RLL+E A AD RGICYLSR+PPH
Sbjct: 71  EKEVN-----LMEEGKQEELNEKNSKHSKS---KKKQRLLEEAAKADQRGICYLSRIPPH 130

Query: 257 MDPLKLRQILSQYGEIQRIYLAPEDAANQV-----KRKRAGGFRGQFFSEGWVEFTDKRV 316
           MDP+KLRQILSQYGEIQRIYLAPED + +V      RKR GGF+ Q FSEGWVEFT K V
Sbjct: 131 MDPVKLRQILSQYGEIQRIYLAPEDPSTRVLRKRENRKRDGGFQDQGFSEGWVEFTKKGV 190

Query: 317 AKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISA 376
           AK+VAN LNGEQIGG+KRSSFYYDLWNIKYLSKFKWDDLT E AYK+A+REQ++ALEISA
Sbjct: 191 AKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTAEIAYKNAVREQRLALEISA 250

Query: 377 AKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPV 436
           AKRERDFYLSKVDKSRAL SIEERLKKKQ ++++S+ + EL  S+++ K+IR+FPQ +PV
Sbjct: 251 AKRERDFYLSKVDKSRALSSIEERLKKKQKVQQESQTHPELPGSEQVTKVIRHFPQKKPV 310

Query: 437 ANSAVQDKPKLSTNFLAGVFGG 454
           A +A   KP+LS + LAGVFGG
Sbjct: 311 AENAAPSKPRLSKDILAGVFGG 315

[Close]

BLAST of Cp4.1LG01g23600 vs. TrEMBL
Match: W9QHA4_9ROSA (Pre-rRNA-processing protein esf2 OS=Morus notabilis GN=L484_002507 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 8.0e-86
Identity = 192/370 (51.89%), Postives = 250/370 (67.57%), Query Frame = 1


Query: 82  EESFEVNLTTDCSPESSKKLKGSKKKKKQLLVEGVDVMERNVEGSVELWESNINSEVKNK 141
           EE  ++N      P+  KK+K    KKKQLL E  ++ E++        ++ ++     K
Sbjct: 3   EEEIQLN-NEKAKPDKEKKIK----KKKQLLKEDAEMEEQD--------QNQLHKTSSQK 62

Query: 142 KKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQFAFEDDEN 201
            K++K  K         A+    + + E+  + G+     G EKN+  E    A ++ + 
Sbjct: 63  SKKRKEEK---------AKCKSLKEEMEKEEENGA-----GGEKNQSQEAVLAAIDEGKK 122

Query: 202 ERADSIVRETSGEKILESNNGKTDQRNM-KRKKRLLKEVANADMRGICYLSRVPPHMDPL 261
           +  +            E+++ KTD + + KRK+RLLKE A A+ RGICYLSRVPPHMDP 
Sbjct: 123 KSLEE-----------EADDEKTDMKKINKRKRRLLKEAAMANKRGICYLSRVPPHMDPF 182

Query: 262 KLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLN 321
           KLRQ+LSQYGEIQRIYL PE +A +  RKRAG F+ Q FSEGW EF+DKR+AK+ AN LN
Sbjct: 183 KLRQLLSQYGEIQRIYLVPEKSAGKAPRKRAGRFQEQGFSEGWAEFSDKRIAKRAANMLN 242

Query: 322 GEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYL 381
           GEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEE AY +A REQK+ALEISAAKRERDFYL
Sbjct: 243 GEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEEIAYNNAAREQKLALEISAAKRERDFYL 302

Query: 382 SKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKP 441
           SKVD++RAL SIE+RLKKKQ L+E++E N++L  SQ+ PK++R F Q QPVA++    K 
Sbjct: 303 SKVDQARALSSIEKRLKKKQKLQEEAETNADLPVSQQSPKVVRKFQQKQPVADNTTVSKR 334

Query: 442 KLSTNFLAGV 451
           +LS + LAG+
Sbjct: 363 RLSKDILAGL 334

[Close]

BLAST of Cp4.1LG01g23600 vs. TAIR10
Match: AT3G56510.1 (AT3G56510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 295.8 bits (756), Expect = 4.5e-80
Identity = 152/257 (59.14%), Postives = 196/257 (76.26%), Query Frame = 1


Query: 198 DDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHM 257
           ++ +E  D I  E   ++ ++S   K D++  K K++LLKE + AD RG+CYLSR+PPHM
Sbjct: 4   EESHELTDGISEEKESKETMKSQ--KADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHM 63

Query: 258 DPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVAN 317
           D ++LR IL+QYGE+ RIYLAPED+  QV RKRAGGFRGQ FSEGWVEF  K VAK+VA+
Sbjct: 64  DHVRLRHILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVAD 123

Query: 318 TLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERD 377
            LNGEQIGG+K+SS YYD+WNIKYL+KFKWDDLTEE AYK AIREQK+ + +SAAKRE+D
Sbjct: 124 MLNGEQIGGKKKSSVYYDIWNIKYLTKFKWDDLTEEIAYKSAIREQKLNMVLSAAKREKD 183

Query: 378 FYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQ 437
           FYLSK++KSRA+  I+ R++KK+ ++E+S  N+E A     P+ I  F Q + + N   Q
Sbjct: 184 FYLSKIEKSRAMTEIDARMEKKRKIQEESGSNAEAAPVFP-PRAIFQFRQKKSIENETSQ 243

Query: 438 DKPKLSTNFLAGVFGGS 455
            KP LST+FLA VFGGS
Sbjct: 244 SKPGLSTDFLASVFGGS 257

[Close]

BLAST of Cp4.1LG01g23600 vs. NCBI nr
Match: gi|659117889|ref|XP_008458840.1| (PREDICTED: pre-rRNA-processing protein ESF2 [Cucumis melo])

HSP 1 Score: 537.7 bits (1384), Expect = 1.9e-149
Identity = 297/380 (78.16%), Postives = 326/380 (85.79%), Query Frame = 1


Query: 79  MPKEESFEVNLTTDCSPESSKK-LKGSKKKKKQLLVEGVDVMERNVEGSVELWESNINSE 138
           M KEES EVNLTTDC+PESSKK  K  K KKKQLL++GVDVME     SV+L ESNINS+
Sbjct: 1   MSKEESSEVNLTTDCNPESSKKRAKSRKNKKKQLLMKGVDVMEMKDVRSVQLGESNINSD 60

Query: 139 ---VKNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQF 198
              VK KKKRKKST+Q + E+SI+ EAGEYE + E  +KE SP+S+ GSE     E+R  
Sbjct: 61  SDKVKKKKKRKKSTQQRIEESSIKDEAGEYENRTETFMKEASPVSNSGSEN--FFEKRTI 120

Query: 199 AFEDDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVP 258
           A ED ENER D+I+RE S  KILES+NGK D+R +KRKK+LLKE ANADMRGICYLSRVP
Sbjct: 121 ALEDAENERTDNILREKSDRKILESDNGKVDRRKIKRKKQLLKEAANADMRGICYLSRVP 180

Query: 259 PHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKK 318
           PHMDPL+LRQILSQYGEIQRIYLAPEDAA+QV+RKRAGGFRGQFFSEGWVEFTDKRVAKK
Sbjct: 181 PHMDPLRLRQILSQYGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRVAKK 240

Query: 319 VANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKR 378
           VAN LNGE IGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQK+ALEISAAKR
Sbjct: 241 VANMLNGEPIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKR 300

Query: 379 ERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANS 438
           ERD YL+KVDKSRAL SIEERLKKKQ LREDSEMNS L DSQKLPKLIR+FPQTQPVA+ 
Sbjct: 301 ERDSYLAKVDKSRALNSIEERLKKKQKLREDSEMNS-LDDSQKLPKLIRSFPQTQPVADV 360

Query: 439 AVQDKPKLSTNFLAGVFGGS 455
           AVQ+K +LSTN LA VFG S
Sbjct: 361 AVQNKQRLSTNVLARVFGSS 377

[Close]

BLAST of Cp4.1LG01g23600 vs. NCBI nr
Match: gi|449450052|ref|XP_004142778.1| (PREDICTED: pre-rRNA-processing protein ESF2 [Cucumis sativus])

HSP 1 Score: 535.0 bits (1377), Expect = 1.2e-148
Identity = 295/383 (77.02%), Postives = 327/383 (85.38%), Query Frame = 1


Query: 79  MPKEESFEVNLTTDCSPESSKK-LKGSKKKKKQLLVEGVDVMERNVEGSVELWESNINSE 138
           M  EES EVNL TDCSPES KK  K  K K+KQLL++GVDVME    GSV+L ESN+N++
Sbjct: 1   MSNEESSEVNLKTDCSPESRKKRAKSRKNKRKQLLIKGVDVMEMKDVGSVQLGESNMNTD 60

Query: 139 V------KNKKKRKKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEE 198
                  K KKKRKKST+Q V E+ I+ EAGEYE +AE  +KE SP+S+ GSE     E+
Sbjct: 61  SDKVKKKKKKKKRKKSTQQRVEESFIKDEAGEYENRAETFMKEASPVSNSGSEI--FFEK 120

Query: 199 RQFAFEDDENERADSIVRETSGEKILESNNGKTDQRNMKRKKRLLKEVANADMRGICYLS 258
           R+ A ED ENER DSI+RE S  KILES+NGK +QR +KRKK+LLKE ANADMRGICYLS
Sbjct: 121 RKIALEDAENERTDSILRENSDGKILESDNGK-NQRKIKRKKQLLKEAANADMRGICYLS 180

Query: 259 RVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRV 318
           RVPPHMDPLKLRQILSQ+GEIQRIYLAPEDAA+QV+RKRAGGFRGQFFSEGWVEFTDKRV
Sbjct: 181 RVPPHMDPLKLRQILSQHGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRV 240

Query: 319 AKKVANTLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISA 378
           AK+VAN LNGE IGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQK+ALEISA
Sbjct: 241 AKRVANMLNGEPIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISA 300

Query: 379 AKRERDFYLSKVDKSRALKSIEERLKKKQNLREDSEMNSELADSQKLPKLIRNFPQTQPV 438
           AKRERDFYL+KVDKSRAL SIEERLKKKQ +REDSEMNS L DSQKLPKLIR+FPQTQPV
Sbjct: 301 AKRERDFYLAKVDKSRALNSIEERLKKKQKMREDSEMNSTLDDSQKLPKLIRSFPQTQPV 360

Query: 439 ANSAVQDKPKLSTNFLAGVFGGS 455
           A+ AVQ+KP+LSTN LAGVFG S
Sbjct: 361 ADFAVQNKPRLSTNVLAGVFGSS 380

[Close]

BLAST of Cp4.1LG01g23600 vs. NCBI nr
Match: gi|297734519|emb|CBI15766.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 176/237 (74.26%), Postives = 198/237 (83.54%), Query Frame = 1


Query: 218 ESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYL 277
           E N+ K   R  K KKRLLKE + AD RG+CYLSR+PPHMD +KLR ILSQYGEIQRIYL
Sbjct: 107 EGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYL 166

Query: 278 APEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLW 337
           APED A QV RKRAGGFRGQ FSEGWVEFT K VAK+VA  LNGEQIGGRKRSSFYYDLW
Sbjct: 167 APEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLW 226

Query: 338 NIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLK 397
           NIKYLSKFKWDDLTEE AYK+AIREQK+ALE+SAAKRERDFYLSKVDKSRAL SIEERLK
Sbjct: 227 NIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLK 286

Query: 398 KKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAGVFGGS 455
           KKQ +++D+  N+E   + + PK+IR FPQ  P+A+ A + KP+LS + LAGVFGGS
Sbjct: 287 KKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAGVFGGS 343

[Close]

BLAST of Cp4.1LG01g23600 vs. NCBI nr
Match: gi|225456507|ref|XP_002284683.1| (PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera])

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 176/237 (74.26%), Postives = 198/237 (83.54%), Query Frame = 1


Query: 218 ESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYL 277
           E N+ K   R  K KKRLLKE + AD RG+CYLSR+PPHMD +KLR ILSQYGEIQRIYL
Sbjct: 20  EGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYL 79

Query: 278 APEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLW 337
           APED A QV RKRAGGFRGQ FSEGWVEFT K VAK+VA  LNGEQIGGRKRSSFYYDLW
Sbjct: 80  APEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLW 139

Query: 338 NIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLK 397
           NIKYLSKFKWDDLTEE AYK+AIREQK+ALE+SAAKRERDFYLSKVDKSRAL SIEERLK
Sbjct: 140 NIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLK 199

Query: 398 KKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAGVFGGS 455
           KKQ +++D+  N+E   + + PK+IR FPQ  P+A+ A + KP+LS + LAGVFGGS
Sbjct: 200 KKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAGVFGGS 256

[Close]

BLAST of Cp4.1LG01g23600 vs. NCBI nr
Match: gi|147860851|emb|CAN83161.1| (hypothetical protein VITISV_022556 [Vitis vinifera])

HSP 1 Score: 335.1 bits (858), Expect = 1.9e-88
Identity = 171/232 (73.71%), Postives = 193/232 (83.19%), Query Frame = 1


Query: 218 ESNNGKTDQRNMKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYL 277
           E N+ K   R  K KKRLLKE + AD RG+CYLSR+PPHMD +KLR ILSQYGEIQRIYL
Sbjct: 20  EGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYL 79

Query: 278 APEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANTLNGEQIGGRKRSSFYYDLW 337
           APED A QV RKRAGGFRGQ FSEGWVEFT K VAK+VA  LNGEQIGGRKRSSFYYDLW
Sbjct: 80  APEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLW 139

Query: 338 NIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLK 397
           NIKYLSKFKWDDLTEE AYK+AIREQK+ALE+SAAKRERDFYLSKVDKSRAL SIEERLK
Sbjct: 140 NIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLK 199

Query: 398 KKQNLREDSEMNSELADSQKLPKLIRNFPQTQPVANSAVQDKPKLSTNFLAG 450
           KKQ +++D+  N+E   + + PK+IR FPQ  P+A+ A + KP+LS + LAG
Sbjct: 200 KKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAG 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ESF2_SCHPO	2.6e-37	37.94	Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
ESF2_GIBZE	4.4e-37	35.36	Pre-rRNA-processing protein ESF2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620...	[more]
ESF2_DEBHA	1.7e-36	36.02	Pre-rRNA-processing protein ESF2 OS=Debaryomyces hansenii (strain ATCC 36239 / C...	[more]
ESF2_PICST	3.2e-35	31.03	Pre-rRNA-processing protein ESF2 OS=Scheffersomyces stipitis (strain ATCC 58785 ...	[more]
ESF2_CANAL	4.1e-35	35.94	Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2...	[more]

BLAST of Cp4.1LG01g23600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUC2_CUCSA	8.7e-149	77.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517890 PE=4 SV=1	[more]
D7SH86_VITVI	1.7e-91	74.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00140 PE=4 SV=...	[more]
A5BED4_VITVI	1.3e-88	73.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022556 PE=4 SV=1	[more]
V4U1X3_9ROSI	9.5e-87	58.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015979mg PE=4 SV=1	[more]
W9QHA4_9ROSA	8.0e-86	51.89	Pre-rRNA-processing protein esf2 OS=Morus notabilis GN=L484_002507 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g23600 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56510.1	4.5e-80	59.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG01g23600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117889\|ref\|XP_008458840.1\|	1.9e-149	78.16	PREDICTED: pre-rRNA-processing protein ESF2 [Cucumis melo]	[more]
gi\|449450052\|ref\|XP_004142778.1\|	1.2e-148	77.02	PREDICTED: pre-rRNA-processing protein ESF2 [Cucumis sativus]	[more]
gi\|297734519\|emb\|CBI15766.3\|	2.4e-91	74.26	unnamed protein product [Vitis vinifera]	[more]
gi\|225456507\|ref\|XP_002284683.1\|	2.4e-91	74.26	PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]	[more]
gi\|147860851\|emb\|CAN83161.1\|	1.9e-88	73.71	hypothetical protein VITISV_022556 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0034462	small-subunit processome assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23600.1	Cp4.1LG01g23600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 249..328 score: 8.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 247..331 score: 0.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 246..328 score: 9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 249..328 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 240..328 score: 3.94
None	No IPR available	unknown	Coil	Coil	coord: 382..409 scor
None	No IPR available	PANTHER	PTHR12311	FAMILY NOT NAMED	coord: 184..454 score: 1.4
None	No IPR available	PANTHER	PTHR12311:SF7	ACTIVATOR OF BASAL TRANSCRIPTION 1	coord: 184..454 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g23600	Cucsa.011090	Cucumber (Gy14) v1	cgycpeB0522
Cp4.1LG01g23600	Cla004636	Watermelon (97103) v1	cpewmB381
Cp4.1LG01g23600	Csa5G517890	Cucumber (Chinese Long) v2	cpecuB417
Cp4.1LG01g23600	MELO3C021598	Melon (DHL92) v3.5.1	cpemeB358
Cp4.1LG01g23600	ClCG09G019430	Watermelon (Charleston Gray)	cpewcgB344
Cp4.1LG01g23600	CSPI05G18030	Wild cucumber (PI 183967)	cpecpiB416
Cp4.1LG01g23600	Lsi02G016070	Bottle gourd (USVL1VR-Ls)	cpelsiB336
Cp4.1LG01g23600	MELO3C021598.2	Melon (DHL92) v3.6.1	cpemedB418
Cp4.1LG01g23600	CsaV3_5G026950	Cucumber (Chinese Long) v3	cpecucB0519
Cp4.1LG01g23600	Bhi06G000493	Wax gourd	cpewgoB0502
Cp4.1LG01g23600	CsGy5G017710	Cucumber (Gy14) v2	cgybcpeB627
Cp4.1LG01g23600	Carg04475	Silver-seed gourd	carcpeB0965

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g23600	Silver-seed gourd	carcpeB0374
Cp4.1LG01g23600	Silver-seed gourd	carcpeB0509
Cp4.1LG01g23600	Silver-seed gourd	carcpeB0517
Cp4.1LG01g23600	Silver-seed gourd	carcpeB0611
Cp4.1LG01g23600	Cucumber (Chinese Long) v3	cpecucB0473
Cp4.1LG01g23600	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g23600	Cucurbita pepo (Zucchini)	cpecpeB347
Cp4.1LG01g23600	Cucurbita pepo (Zucchini)	cpecpeB396
Cp4.1LG01g23600	Cucurbita pepo (Zucchini)	cpecpeB398
Cp4.1LG01g23600	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g23600	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g23600	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g23600	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g23600	Cucumber (Gy14) v2	cgybcpeB062