Cp4.1LG01g22740 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGGTATGCAAGAAGAGGGGAATTGGATGTTGCACGACAACTGTTTGATGAAATGCCAATAAGAGACTTGGTCTCGTGGAATGTGATGATAACAGCATATGCAAAGCTCGGGGCGATGGAGAAGGCAAGGAAACTGTTTGATGAAGCTCCGAACAAAGATGTCGTCACGTGGAATGCAATGATTGCGGGATACGTTCTATCGGGATTGAACAGGGAAGCTCTGGAGATGTTTGATGCAATGAGAGATGTGGGACAAAGGCCAGATGATGTGACAATGTTGAGTATCTTATCTGCTACTGCTGATTTGGGAGACTTGGAAGTTGGAAAGAAGATATACCGTTCCATTTTCGATATGTATTGTGGAGATATAAGTGTTCTTCTTGGTAATGCACTTATAGACATGTATGCCAAATGTGGAAGCATTGAGAACGCTCTGGACGTGTTCCGAGCGATGAGAGATAAAGATACCTCCTCATGGAATTCAATAATAGGAGGATTGGCTTTTCATGGACATGCCAAGGAATCCATAAATCTGTTTCAAGAAATGATGAGGTTGAAAATCAGGCCAAATGAGATCACTTTTGTTGGTGTGTTGGTTGCTTGTAGTCATGCTGGGAAAGTACAAGAAGGGCGTATGTATTTTAATCTCATGAGAGACTCGTATAAAATCGAGCCGAATATCAAGCATTACGGATGTATGGTTGACATCTTGGGGCGAGCCGGGTTATTGATTGAAGCATTTGATTTTATAGACACAATGGAGATTGAACCTAATGCCATCATTTGGAGAACACTGCTAGGGGCTTGTAGAGTACATGGAGATGTCGAGTTGGGAAGGCGTGCCAACGAGCAATTACTCAAAATGAGGAAGGATGAGAGTGGGGATTATGTACTCCTATCTAACATATATGCATCAAAAGGTGAGTGGGATGGTGTCGAGAAAGTACGAAAGTTGATGGATGATGGTGGGGTGAAGAAGGAGGCAGGTCGTAGTATGATCGATGCAGATAATAGCTTTCTAATGAATTTTTTGTTCGACTCAAAGCCGAAGTTCGTCGAAGAAAGTAGTTAACTGTGCGTTGCTATGCTCCCATCTTTCGTGTATTTTCTCTCGGTCAGGAACGACTGAAGGCACAATGTGCATTCTGTTCCAATAACCACACGCTCTCGTAGCTTTACTTTTGGTTTCCCCAAAATGTCTCGTACCAATGGAGATATATTCCTTAATTAGCTGACGTGGGACTCCTCTCTCAACACAATTCTCGTCATAGATTATACCGTTCTTTACATGATTTTCATTTAGATTGGAGTATTCTTACCATGTTTTCCTGTTGAAGTCTACCTGCATTGTTGGGCTAG ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGTCTACCTGCATTGTTGGGCTAG ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGTCTACCTGCATTGTTGGGCTAG MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAGLPALLG
BLAST of Cp4.1LG01g22740 vs. Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 212.2 bits (539), Expect = 5.0e-54 Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27 Identity = 67/164 (40.85%), Postives = 111/164 (67.68%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27 Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26 Identity = 60/180 (33.33%), Postives = 105/180 (58.33%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 7.5e-26 Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TrEMBL
Match: A0A0A0KU97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636660 PE=4 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 5.7e-89 Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TrEMBL
Match: M5WT44_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003946mg PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 3.6e-75 Identity = 139/189 (73.54%), Postives = 158/189 (83.60%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TrEMBL
Match: F6H5U9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01060 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 7.4e-73 Identity = 135/189 (71.43%), Postives = 158/189 (83.60%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TrEMBL
Match: A0A059BEH9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01936 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72 Identity = 138/189 (73.02%), Postives = 162/189 (85.71%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TrEMBL
Match: B9T4E5_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0299330 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 6.3e-72 Identity = 135/189 (71.43%), Postives = 154/189 (81.48%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TAIR10
Match: AT5G15300.1 (AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 212.2 bits (539), Expect = 2.8e-55 Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 124.8 bits (312), Expect = 5.9e-29 Identity = 67/164 (40.85%), Postives = 111/164 (67.68%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TAIR10
Match: AT2G01510.1 (AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28 Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27 Identity = 60/180 (33.33%), Postives = 105/180 (58.33%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. TAIR10
Match: AT1G74630.1 (AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 118.6 bits (296), Expect = 4.2e-27 Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. NCBI nr
Match: gi|449447637|ref|XP_004141574.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis sativus]) HSP 1 Score: 335.1 bits (858), Expect = 8.1e-89 Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. NCBI nr
Match: gi|700197297|gb|KGN52474.1| (hypothetical protein Csa_5G636660 [Cucumis sativus]) HSP 1 Score: 335.1 bits (858), Expect = 8.1e-89 Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. NCBI nr
Match: gi|659118836|ref|XP_008459333.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis melo]) HSP 1 Score: 317.8 bits (813), Expect = 1.3e-83 Identity = 155/189 (82.01%), Postives = 170/189 (89.95%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. NCBI nr
Match: gi|645249535|ref|XP_008230793.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Prunus mume]) HSP 1 Score: 299.7 bits (766), Expect = 3.8e-78 Identity = 144/189 (76.19%), Postives = 161/189 (85.19%), Query Frame = 1
BLAST of Cp4.1LG01g22740 vs. NCBI nr
Match: gi|658025350|ref|XP_008348079.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Malus domestica]) HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77 Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |