Cp4.1LG01g22740.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g22740.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cp4.1LG01 : 20022449 .. 20024370 (-)
Sequence length	588

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGGTATGCAAGAAGAGGGGAATTGGATGTTGCACGACAACTGTTTGATGAAATGCCAATAAGAGACTTGGTCTCGTGGAATGTGATGATAACAGCATATGCAAAGCTCGGGGCGATGGAGAAGGCAAGGAAACTGTTTGATGAAGCTCCGAACAAAGATGTCGTCACGTGGAATGCAATGATTGCGGGATACGTTCTATCGGGATTGAACAGGGAAGCTCTGGAGATGTTTGATGCAATGAGAGATGTGGGACAAAGGCCAGATGATGTGACAATGTTGAGTATCTTATCTGCTACTGCTGATTTGGGAGACTTGGAAGTTGGAAAGAAGATATACCGTTCCATTTTCGATATGTATTGTGGAGATATAAGTGTTCTTCTTGGTAATGCACTTATAGACATGTATGCCAAATGTGGAAGCATTGAGAACGCTCTGGACGTGTTCCGAGCGATGAGAGATAAAGATACCTCCTCATGGAATTCAATAATAGGAGGATTGGCTTTTCATGGACATGCCAAGGAATCCATAAATCTGTTTCAAGAAATGATGAGGTTGAAAATCAGGCCAAATGAGATCACTTTTGTTGGTGTGTTGGTTGCTTGTAGTCATGCTGGGAAAGTACAAGAAGGGCGTATGTATTTTAATCTCATGAGAGACTCGTATAAAATCGAGCCGAATATCAAGCATTACGGATGTATGGTTGACATCTTGGGGCGAGCCGGGTTATTGATTGAAGCATTTGATTTTATAGACACAATGGAGATTGAACCTAATGCCATCATTTGGAGAACACTGCTAGGGGCTTGTAGAGTACATGGAGATGTCGAGTTGGGAAGGCGTGCCAACGAGCAATTACTCAAAATGAGGAAGGATGAGAGTGGGGATTATGTACTCCTATCTAACATATATGCATCAAAAGGTGAGTGGGATGGTGTCGAGAAAGTACGAAAGTTGATGGATGATGGTGGGGTGAAGAAGGAGGCAGGTCGTAGTATGATCGATGCAGATAATAGCTTTCTAATGAATTTTTTGTTCGACTCAAAGCCGAAGTTCGTCGAAGAAAGTAGTTAACTGTGCGTTGCTATGCTCCCATCTTTCGTGTATTTTCTCTCGGTCAGGAACGACTGAAGGCACAATGTGCATTCTGTTCCAATAACCACACGCTCTCGTAGCTTTACTTTTGGTTTCCCCAAAATGTCTCGTACCAATGGAGATATATTCCTTAATTAGCTGACGTGGGACTCCTCTCTCAACACAATTCTCGTCATAGATTATACCGTTCTTTACATGATTTTCATTTAGATTGGAGTATTCTTACCATGTTTTCCTGTTGAAGTCTACCTGCATTGTTGGGCTAG

mRNA sequence

ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGTCTACCTGCATTGTTGGGCTAG

Coding sequence (CDS)

ATGATCCGAAAGAGAACGAATGATAATGTTAGCTCCAACCGCTTTCAACGCTCTAGCTTATGGCAGAAATGCACCAATTTTCGTGCTTTGAAGCAAGTTCATGCTTTTTTGGTCATCAATGGCTTTAATTCAAGCCCCTCTGCCCTCAGAGAACTTATTTTCCTAAGTGCTATAGCTGTTTCTGGAACAATGCACTATGCCCATCAAGTGTTTGCTCAAATTACTGAACCGGATATCTTCATGTGGAACACCATGATCAGGGGTTCGGCTCAGAGTCTGGCGCCTGCAAGCGCTGTTTCTCTTTACGCACAGATGGAAAATCGTGGGGTTAAGCCTGATAAATTTACCTTCTCCTTTGTTCTCAAGGCATGTACTAAACTTTCTTGGGTTAAGTTAGGATTTGGGATTCATGGGAAGGTTGTGAAGTTTGGGTTTCAATCCAATACATTTGTAAGGAATACTCTTATTTATTTTCATGCTAATTGCGGCGATTTGAGCACTGCAAGAGCACTTTTTGATGCCTCTGCTAAAAGGGATGTTGTGCCTTGGTCAGCTTTGACAGCAGGTCTACCTGCATTGTTGGGCTAG

Protein sequence

MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAGLPALLG

Homology

[Close]

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 5.0e-54
Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIR++TND  ++ R  R  LWQ C N R LKQ+HA +V+NG  S+ S + ELI+ ++++V
Sbjct: 1   MIRRQTNDRTTNRR--RPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
            G + YAH++F +I +PD+ + N ++RGSAQS+ P   VSLY +ME RGV PD++TF+FV
Sbjct: 61  PGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKAC+KL W   GF  HGKVV+ GF  N +V+N LI FHANCGDL  A  LFD SAK   
Sbjct: 121 LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 180

Query: 181 VPWSALTAG 190
           V WS++T+G
Sbjct: 181 VAWSSMTSG 187

[Close]

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 67/164 (40.85%), Postives = 111/164 (67.68%), Query Frame = 1


Query: 30  LKQVHAFLVINGFNSSPSAL-RELIF-LSAIAVSGTMHYAHQVFAQITEP-DIFMWNTMI 89
           L+Q+HAF + +G + S + L + LIF L ++     M YAH+VF++I +P ++F+WNT+I
Sbjct: 33  LRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLI 92

Query: 90  RGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGF 149
           RG A+     SA SLY +M   G V+PD  T+ F++KA T ++ V+LG  IH  V++ GF
Sbjct: 93  RGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGF 152

Query: 150 QSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAG 190
            S  +V+N+L++ +ANCGD+++A  +FD   ++D+V W+++  G
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

[Close]

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 28  RALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPDIFMWNTMIR 87
           + LK++HA ++  GF+   S L +L  L  + V G M YA QVF ++ +P IF+WNT+ +
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQL--LENLVVIGDMCYARQVFDEMHKPRIFLWNTLFK 84

Query: 88  GSAQSLAPASAVSLYAQMENRGVKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGFQS 147
           G  ++  P  ++ LY +M + GV+PD+FT+ FV+KA ++L     GF +H  VVK+GF  
Sbjct: 85  GYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGC 144

Query: 148 NTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTA 189
              V   L+  +   G+LS+A  LF++   +D+V W+A  A
Sbjct: 145 LGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLA 183

[Close]

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 60/180 (33.33%), Postives = 105/180 (58.33%), Query Frame = 1


Query: 11  SSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQV 70
           ++ R +  SL ++C + R LKQ H  ++  G  S P +  +L  ++A++   ++ YA +V
Sbjct: 27  NNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKV 86

Query: 71  FAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSW 130
           F +I +P+ F WNT+IR  A    P  ++  +  M +     P+K+TF F++KA  ++S 
Sbjct: 87  FDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSS 146

Query: 131 VKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAG 190
           + LG  +HG  VK    S+ FV N+LI+ + +CGDL +A  +F    ++DVV W+++  G
Sbjct: 147 LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206

[Close]

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.5e-26
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 1


Query: 19  SLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPD 78
           SL   C N RAL Q+H   +  G ++      +LI   AI++S  + YA ++     EPD
Sbjct: 10  SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPD 69

Query: 79  IFMWNTMIRGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSWVKLGFGIH 138
            FM+NT++RG ++S  P ++V+++ +M  +G V PD F+F+FV+KA      ++ GF +H
Sbjct: 70  AFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMH 129

Query: 139 GKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSAL 187
            + +K G +S+ FV  TLI  +  CG +  AR +FD   + ++V W+A+
Sbjct: 130 CQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 178

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL
Match: A0A0A0KU97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636660 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 5.7e-89
Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTNDN S NRFQ+SSLWQKCTNFR+LKQ+HAFL++NG NS+ S LRELIF+SAI V
Sbjct: 1   MIRKRTNDN-SFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGTM YAHQ+FAQI++PDIFMWNTMIRGSAQ+L PA+AVSLY QMENRGV+PDKFTFSFV
Sbjct: 61  SGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVKLGFGIHGKV+K GFQSNTFVRNTLIYFHANCGDL+TARALFDASAKR+V
Sbjct: 121 LKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL
Match: M5WT44_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003946mg PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.6e-75
Identity = 139/189 (73.54%), Postives = 158/189 (83.60%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRK+ ND  S+ R QRSS WQKCTN RALKQVHA +V+NGFNS+ SA+R+LIF  A+A+
Sbjct: 1   MIRKKPNDR-SAYRHQRSSFWQKCTNLRALKQVHASMVVNGFNSNYSAIRQLIFAGAMAI 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGT+ YAHQ+F  + EPD FMWNTMIRGSAQS  P +A+ LY +MENR   PD FTF F+
Sbjct: 61  SGTIDYAHQLFVHVAEPDTFMWNTMIRGSAQSQNPLNAIVLYTRMENRHAMPDSFTFPFI 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVK+G GIHGKVV+FGF+SNTFVRNTLIYFHANCGDL  A  LFDASAKRDV
Sbjct: 121 LKACTKLSWVKMGMGIHGKVVRFGFESNTFVRNTLIYFHANCGDLKIASELFDASAKRDV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL
Match: F6H5U9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01060 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.4e-73
Identity = 135/189 (71.43%), Postives = 158/189 (83.60%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKR  D  S +R QRS LW+ CT    LKQ+HA +++ GFNS+ SALRELI+ S+IA+
Sbjct: 1   MIRKRLTDK-SPSRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAI 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGTM YAHQ+F  ITEPD FMWNTMIRGSAQS +P +A+SLY+QMEN  V+PDKFTF FV
Sbjct: 61  SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACT+L WVK+GFG+HG+V + GF+SNTFVRNTLIYFHANCGDL+ ARALFD SAKRDV
Sbjct: 121 LKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDV 180

Query: 181 VPWSALTAG 190
           V WSALTAG
Sbjct: 181 VAWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL
Match: A0A059BEH9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01936 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 138/189 (73.02%), Postives = 162/189 (85.71%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTND  SSNR QRSSLW+ CT+  ALKQ+ A LV+ GFNS+ +ALREL+F  AIAV
Sbjct: 1   MIRKRTNDR-SSNRQQRSSLWRNCTDLHALKQIQASLVVRGFNSNRAALRELVFAGAIAV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGT+ YA +VFAQI EPD+FMWNT+IRG+AQSL P++AV LY+QME+R V+PD FTF FV
Sbjct: 61  SGTIGYALRVFAQIAEPDLFMWNTVIRGAAQSLNPSNAVRLYSQMESRFVRPDDFTFPFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVK+GFGIHG+++KFGF+SNTFVRNTLIYFHAN G+L  AR  F+ SAKRDV
Sbjct: 121 LKACTKLSWVKMGFGIHGRIIKFGFESNTFVRNTLIYFHANRGELGIARHYFEGSAKRDV 180

Query: 181 VPWSALTAG 190
           V WSALTAG
Sbjct: 181 VAWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL
Match: B9T4E5_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0299330 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 6.3e-72
Identity = 135/189 (71.43%), Postives = 154/189 (81.48%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTND  S+ R Q SSLWQ CTN R+LKQ+HA L+I GFNSS  ALRELIF SAI +
Sbjct: 1   MIRKRTNDR-STKRQQPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVI 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
            GT+ YAHQ+F Q+ EPDIFMWNTM+RGS+QS +P  AVSLY QMEN G+KPDKFTFSF+
Sbjct: 61  PGTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFL 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACT+L W  +GF IHGK +K GFQ NTFVRNTL+Y+HA CGDL  AR +FD SAKRDV
Sbjct: 121 LKACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDV 180

Query: 181 VPWSALTAG 190
           V WSALTAG
Sbjct: 181 VAWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10
Match: AT5G15300.1 (AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-55
Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIR++TND  ++ R  R  LWQ C N R LKQ+HA +V+NG  S+ S + ELI+ ++++V
Sbjct: 1   MIRRQTNDRTTNRR--RPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
            G + YAH++F +I +PD+ + N ++RGSAQS+ P   VSLY +ME RGV PD++TF+FV
Sbjct: 61  PGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKAC+KL W   GF  HGKVV+ GF  N +V+N LI FHANCGDL  A  LFD SAK   
Sbjct: 121 LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 180

Query: 181 VPWSALTAG 190
           V WS++T+G
Sbjct: 181 VAWSSMTSG 187

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-29
Identity = 67/164 (40.85%), Postives = 111/164 (67.68%), Query Frame = 1


Query: 30  LKQVHAFLVINGFNSSPSAL-RELIF-LSAIAVSGTMHYAHQVFAQITEP-DIFMWNTMI 89
           L+Q+HAF + +G + S + L + LIF L ++     M YAH+VF++I +P ++F+WNT+I
Sbjct: 33  LRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLI 92

Query: 90  RGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGF 149
           RG A+     SA SLY +M   G V+PD  T+ F++KA T ++ V+LG  IH  V++ GF
Sbjct: 93  RGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGF 152

Query: 150 QSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAG 190
            S  +V+N+L++ +ANCGD+++A  +FD   ++D+V W+++  G
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 196

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10
Match: AT2G01510.1 (AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 28  RALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPDIFMWNTMIR 87
           + LK++HA ++  GF+   S L +L  L  + V G M YA QVF ++ +P IF+WNT+ +
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQL--LENLVVIGDMCYARQVFDEMHKPRIFLWNTLFK 84

Query: 88  GSAQSLAPASAVSLYAQMENRGVKPDKFTFSFVLKACTKLSWVKLGFGIHGKVVKFGFQS 147
           G  ++  P  ++ LY +M + GV+PD+FT+ FV+KA ++L     GF +H  VVK+GF  
Sbjct: 85  GYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGC 144

Query: 148 NTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTA 189
              V   L+  +   G+LS+A  LF++   +D+V W+A  A
Sbjct: 145 LGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLA 183

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 60/180 (33.33%), Postives = 105/180 (58.33%), Query Frame = 1


Query: 11  SSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQV 70
           ++ R +  SL ++C + R LKQ H  ++  G  S P +  +L  ++A++   ++ YA +V
Sbjct: 27  NNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKV 86

Query: 71  FAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSW 130
           F +I +P+ F WNT+IR  A    P  ++  +  M +     P+K+TF F++KA  ++S 
Sbjct: 87  FDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSS 146

Query: 131 VKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSALTAG 190
           + LG  +HG  VK    S+ FV N+LI+ + +CGDL +A  +F    ++DVV W+++  G
Sbjct: 147 LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206

[Close]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10
Match: AT1G74630.1 (AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-27
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 1


Query: 19  SLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAVSGTMHYAHQVFAQITEPD 78
           SL   C N RAL Q+H   +  G ++      +LI   AI++S  + YA ++     EPD
Sbjct: 10  SLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPD 69

Query: 79  IFMWNTMIRGSAQSLAPASAVSLYAQMENRG-VKPDKFTFSFVLKACTKLSWVKLGFGIH 138
            FM+NT++RG ++S  P ++V+++ +M  +G V PD F+F+FV+KA      ++ GF +H
Sbjct: 70  AFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMH 129

Query: 139 GKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDVVPWSAL 187
            + +K G +S+ FV  TLI  +  CG +  AR +FD   + ++V W+A+
Sbjct: 130 CQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 178

[Close]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr
Match: gi|449447637|ref|XP_004141574.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.1e-89
Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTNDN S NRFQ+SSLWQKCTNFR+LKQ+HAFL++NG NS+ S LRELIF+SAI V
Sbjct: 1   MIRKRTNDN-SFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGTM YAHQ+FAQI++PDIFMWNTMIRGSAQ+L PA+AVSLY QMENRGV+PDKFTFSFV
Sbjct: 61  SGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVKLGFGIHGKV+K GFQSNTFVRNTLIYFHANCGDL+TARALFDASAKR+V
Sbjct: 121 LKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr
Match: gi|700197297|gb|KGN52474.1| (hypothetical protein Csa_5G636660 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.1e-89
Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTNDN S NRFQ+SSLWQKCTNFR+LKQ+HAFL++NG NS+ S LRELIF+SAI V
Sbjct: 1   MIRKRTNDN-SFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGTM YAHQ+FAQI++PDIFMWNTMIRGSAQ+L PA+AVSLY QMENRGV+PDKFTFSFV
Sbjct: 61  SGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVKLGFGIHGKV+K GFQSNTFVRNTLIYFHANCGDL+TARALFDASAKR+V
Sbjct: 121 LKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr
Match: gi|659118836|ref|XP_008459333.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.3e-83
Identity = 155/189 (82.01%), Postives = 170/189 (89.95%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKRTNDN   NRF  SSLWQKCTNFRALKQ+HAFL++NG NS+ S LRELIF+SA+ V
Sbjct: 1   MIRKRTNDN-RFNRFHHSSLWQKCTNFRALKQLHAFLIVNGLNSTNSVLRELIFVSAMVV 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGTM YAHQ+FAQIT+PDIFMWNTMIRGS QSL PA+AVSLY QM+NRGV+PDKFTFSFV
Sbjct: 61  SGTMDYAHQLFAQITQPDIFMWNTMIRGSTQSLKPATAVSLYTQMDNRGVRPDKFTFSFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSW KLG  IHGK++K GFQSNTFVRNTLIYFHANCGDL+ ARALFD SAKRDV
Sbjct: 121 LKACTKLSWDKLGIVIHGKILKSGFQSNTFVRNTLIYFHANCGDLAIARALFDDSAKRDV 180

Query: 181 VPWSALTAG 190
           VPWSA+TAG
Sbjct: 181 VPWSAMTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr
Match: gi|645249535|ref|XP_008230793.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Prunus mume])

HSP 1 Score: 299.7 bits (766), Expect = 3.8e-78
Identity = 144/189 (76.19%), Postives = 161/189 (85.19%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKR ND  S+NR QRSS WQKCTN RALKQVHA +V+NGFNS+ SA+RELIF  A+A+
Sbjct: 1   MIRKRPNDR-SANRHQRSSFWQKCTNLRALKQVHASMVVNGFNSNYSAIRELIFAGAMAI 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGT+ YAHQ+F  + EPD FMWNTMIRGSAQS  P +A+ LY QMENR  +PD FTF F+
Sbjct: 61  SGTIDYAHQLFVHVAEPDTFMWNTMIRGSAQSQNPLNAIVLYTQMENRHARPDSFTFPFI 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVK+G GIHGKVV+FGF+SNTFVRNTLIYFHANCGDL  AR LFDASAKRDV
Sbjct: 121 LKACTKLSWVKMGMGIHGKVVRFGFESNTFVRNTLIYFHANCGDLKIARELFDASAKRDV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

[Close]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr
Match: gi|658025350|ref|XP_008348079.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Malus domestica])

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-77
Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 1


Query: 1   MIRKRTNDNVSSNRFQRSSLWQKCTNFRALKQVHAFLVINGFNSSPSALRELIFLSAIAV 60
           MIRKR ND  S+NR QRSSLWQKCTN RALKQVHA +V+NGFNS+ SA+RELIF SA+A+
Sbjct: 1   MIRKRPNDR-STNRQQRSSLWQKCTNLRALKQVHASMVVNGFNSNYSAIRELIFCSAMAI 60

Query: 61  SGTMHYAHQVFAQITEPDIFMWNTMIRGSAQSLAPASAVSLYAQMENRGVKPDKFTFSFV 120
           SGT+ YAHQVF  ++EPD F+WNTMIRGSAQS +P +AV LY +MENR  +PD FTF FV
Sbjct: 61  SGTIDYAHQVFDHVSEPDNFLWNTMIRGSAQSQSPLNAVLLYTRMENRHARPDGFTFPFV 120

Query: 121 LKACTKLSWVKLGFGIHGKVVKFGFQSNTFVRNTLIYFHANCGDLSTARALFDASAKRDV 180
           LKACTKLSWVK+G GIHGKVV+FGF+SNTFVRNTLIYFHANCGDL  A ALFD SAKRDV
Sbjct: 121 LKACTKLSWVKMGMGIHGKVVRFGFESNTFVRNTLIYFHANCGDLRIASALFDDSAKRDV 180

Query: 181 VPWSALTAG 190
           VPWSALTAG
Sbjct: 181 VPWSALTAG 188

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g22740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP385_ARATH	5.0e-54	52.91	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN...	[more]
PP330_ARATH	1.0e-27	40.85	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP140_ARATH	3.0e-27	37.89	Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop...	[more]
PP175_ARATH	2.0e-26	33.33	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
PP122_ARATH	7.5e-26	35.50	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG01g22740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU97_CUCSA	5.7e-89	86.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636660 PE=4 SV=1	[more]
M5WT44_PRUPE	3.6e-75	73.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003946mg PE=4 SV=1	[more]
F6H5U9_VITVI	7.4e-73	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01060 PE=4 SV=...	[more]
A0A059BEH9_EUCGR	1.7e-72	73.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01936 PE=4 SV=1	[more]
B9T4E5_RICCO	6.3e-72	71.43	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]

BLAST of Cp4.1LG01g22740.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15300.1	2.8e-55	52.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	5.9e-29	40.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G01510.1	1.7e-28	37.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	1.1e-27	33.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74630.1	4.2e-27	35.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG01g22740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447637\|ref\|XP_004141574.1\|	8.1e-89	86.24	PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis sativu...	[more]
gi\|700197297\|gb\|KGN52474.1\|	8.1e-89	86.24	hypothetical protein Csa_5G636660 [Cucumis sativus]	[more]
gi\|659118836\|ref\|XP_008459333.1\|	1.3e-83	82.01	PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Cucumis melo]	[more]
gi\|645249535\|ref\|XP_008230793.1\|	3.8e-78	76.19	PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Prunus mume]	[more]
gi\|658025350\|ref\|XP_008348079.1\|	1.9e-77	77.25	PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Malus dom...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g22740	Cp4.1LG01g22740	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22740.1:cds:001	Cp4.1LG01g22740.1:cds:001	CDS
Cp4.1LG01g22740.1:cds:002	Cp4.1LG01g22740.1:cds:002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22740.1	Cp4.1LG01g22740.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 77..125 score: 2.1
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 81..113 score: 0.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 113..147 score: 6.851coord: 148..182 score: 7.881coord: 78..112 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 61..189 score: 4.7E-86coord: 1..22 score: 4.7
None	No IPR available	PANTHER	PTHR24015:SF820	SUBFAMILY NOT NAMED	coord: 61..189 score: 4.7E-86coord: 1..22 score: 4.7