Cp4.1LG01g21540 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g21540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLate embryogenesis abundant protein, putative
LocationCp4.1LG01 : 18024142 .. 18024648 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCCGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTATCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGCCGAATCGTCAGTTTGTAACTCTTCAGTGTTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTGTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA

mRNA sequence

ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCCGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTATCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGCCGAATCGTCAGTTTGTAACTCTTCAGTGTTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTGTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA

Coding sequence (CDS)

ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCCGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTATCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGCCGAATCGTCAGTTTGTAACTCTTCAGTGTTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTGTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA

Protein sequence

MSPRLRLSLCRLLAGKSQASTSSSSCIVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRPNRQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE
BLAST of Cp4.1LG01g21540 vs. TrEMBL
Match: A0A0A0KEB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 122/168 (72.62%), Postives = 133/168 (79.17%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCIVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRPN 60
           MSPR RL L R L   SQ S SSSS   R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
            +FV+L C R YSG SG+SEP+ DQ+REVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cp4.1LG01g21540 vs. TrEMBL
Match: A0A0S2GL25_POPTO (Uncharacterized protein OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 99/179 (55.31%), Postives = 121/179 (67.60%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGK----SQASTSSSSCIVRRILDSSLLPNS---EFPYKLRP--DDL 60
           M  RL++SL +LL  +    S   T+ S    R ++ +  +PNS     P  L     +L
Sbjct: 1   MQKRLQISLFKLLLRRPFEHSPKPTNPSPLQSRALISTYFVPNSIDSRNPKFLHTPVSNL 60

Query: 61  H-FSYVMRPNRQFVTLQCLRRYSGGSGN-SEPECDQIREVDRINLKFAEAREEIESAMES 120
           H F++  RPN + +T Q  R +S  SG  S P  D  REVD INLKFAEAREEIE A ES
Sbjct: 61  HTFTHPFRPNTRALTDQNRRGHSTESGGESVPLLDVNREVDMINLKFAEAREEIEMASES 120

Query: 121 KETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           KETVYFDEEAECAR AVKEV+D++EGLL KL E+E+ ALQRSMGLK+EQLKAELQQLD+
Sbjct: 121 KETVYFDEEAECARAAVKEVMDLFEGLLGKLPESEKAALQRSMGLKMEQLKAELQQLDD 179

BLAST of Cp4.1LG01g21540 vs. TrEMBL
Match: B9H7X4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22000g PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 99/184 (53.80%), Postives = 123/184 (66.85%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGK----SQASTSSSSCIVRRILDSSLLPNS-EFPYKLRPDDLH--- 60
           M  +L++SL +LL       S   T++ S     ++ S L+PNS E P    P  LH   
Sbjct: 1   MQKQLQISLFKLLLTHPFEHSPKPTNTLSHKYLTLISSQLVPNSVESP---NPKFLHAPI 60

Query: 61  -----FSYVMRPNRQ--FVTLQCLRRYSGGSGN-SEPECDQIREVDRINLKFAEAREEIE 120
                F++  R +R+    T    RR+S  SG+ S PE D  +EVD INLKFAEAREEIE
Sbjct: 61  SNLHTFTHPFRRSRRNRSPTGHTRRRHSTESGSGSVPELDVNKEVDMINLKFAEAREEIE 120

Query: 121 SAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQ 169
            AMESKETVYFDEEAECAR AVKEV+DM+EGLL KL E+++ ALQRSMGLK+EQLKAELQ
Sbjct: 121 MAMESKETVYFDEEAECARAAVKEVMDMFEGLLGKLQESKKAALQRSMGLKMEQLKAELQ 180

BLAST of Cp4.1LG01g21540 vs. TrEMBL
Match: B9SM69_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296450 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.8e-30
Identity = 87/141 (61.70%), Postives = 100/141 (70.92%), Query Frame = 1

Query: 34  SSLLPNSEFPYKLRPDDLHFSYVMRPNRQ-----FVTLQCLRRYSGGSGNSE-PECDQIR 93
           S+L P  +FP  L    L+FS    P  Q     + T   LR +S  SG    PE D  +
Sbjct: 64  STLTP--QFPNSLARKILYFS--TNPRHQDLHSCYPTCNALRNHSTESGGGPVPELDVNK 123

Query: 94  EVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKA 153
           EVD INLKFAEAREEIE AMESKETVYF+EEAECAR AVKEV DM++GLL KL ++ER A
Sbjct: 124 EVDMINLKFAEAREEIEMAMESKETVYFNEEAECARAAVKEVFDMFDGLLGKLPDSERAA 183

Query: 154 LQRSMGLKIEQLKAELQQLDE 169
           L+RSMGLKIEQLKAELQQLD+
Sbjct: 184 LRRSMGLKIEQLKAELQQLDD 200

BLAST of Cp4.1LG01g21540 vs. TrEMBL
Match: M5VGY7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019583mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 81/131 (61.83%), Postives = 97/131 (74.05%), Query Frame = 1

Query: 38  PNSEFPYKLRPDDLHFSYVMRPNRQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFA 97
           P +  P+ L P   + S       QF+    LR++SGG+       DQ +EVD INLKFA
Sbjct: 9   PTTNSPHFLHPTFSNSS-------QFINRHNLRQFSGGADGF----DQNKEVDMINLKFA 68

Query: 98  EAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIE 157
           EAREEIE AMESKETVYFDEEAECAR AVKEVLD+++GLLAK  E+++ ALQR+MGLKIE
Sbjct: 69  EAREEIEMAMESKETVYFDEEAECARTAVKEVLDLFDGLLAKSPEDKKAALQRAMGLKIE 128

Query: 158 QLKAELQQLDE 169
           QLKAEL+QLDE
Sbjct: 129 QLKAELKQLDE 128

BLAST of Cp4.1LG01g21540 vs. TAIR10
Match: AT1G71730.1 (AT1G71730.1 unknown protein)

HSP 1 Score: 131.3 bits (329), Expect = 5.4e-31
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1

Query: 59  PNRQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEE 118
           PN     L+  RRYS GS +  P  D  + VD INLKFAEAREEIE AM++KETVYF+EE
Sbjct: 69  PNNASFFLENQRRYSTGSSSGSPP-DVNKVVDEINLKFAEAREEIEMAMDAKETVYFNEE 128

Query: 119 AECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           AECARDAV EVL+M++GLL K+ E E+ +LQRSMGLKIEQLKAEL+QL+E
Sbjct: 129 AECARDAVAEVLEMFQGLLGKVTEKEKASLQRSMGLKIEQLKAELEQLNE 177

BLAST of Cp4.1LG01g21540 vs. NCBI nr
Match: gi|659113726|ref|XP_008456723.1| (PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 124/168 (73.81%), Postives = 133/168 (79.17%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCIVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRPN 60
           MSPR RL L R L G SQ S SSSS   RRILD S  P        R DDLHFSY+M  N
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKP-------WRADDLHFSYLMSSN 60

Query: 61  RQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
            QFVT Q  R +S  SG+SEP+ DQ+REVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SQFVTFQSFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cp4.1LG01g21540 vs. NCBI nr
Match: gi|449446379|ref|XP_004140949.1| (PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 122/168 (72.62%), Postives = 133/168 (79.17%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCIVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRPN 60
           MSPR RL L R L   SQ S SSSS   R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
            +FV+L C R YSG SG+SEP+ DQ+REVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of Cp4.1LG01g21540 vs. NCBI nr
Match: gi|952025388|gb|ALN96987.1| (hypothetical protein [Populus tomentosa])

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 99/179 (55.31%), Postives = 121/179 (67.60%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGK----SQASTSSSSCIVRRILDSSLLPNS---EFPYKLRP--DDL 60
           M  RL++SL +LL  +    S   T+ S    R ++ +  +PNS     P  L     +L
Sbjct: 1   MQKRLQISLFKLLLRRPFEHSPKPTNPSPLQSRALISTYFVPNSIDSRNPKFLHTPVSNL 60

Query: 61  H-FSYVMRPNRQFVTLQCLRRYSGGSGN-SEPECDQIREVDRINLKFAEAREEIESAMES 120
           H F++  RPN + +T Q  R +S  SG  S P  D  REVD INLKFAEAREEIE A ES
Sbjct: 61  HTFTHPFRPNTRALTDQNRRGHSTESGGESVPLLDVNREVDMINLKFAEAREEIEMASES 120

Query: 121 KETVYFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           KETVYFDEEAECAR AVKEV+D++EGLL KL E+E+ ALQRSMGLK+EQLKAELQQLD+
Sbjct: 121 KETVYFDEEAECARAAVKEVMDLFEGLLGKLPESEKAALQRSMGLKMEQLKAELQQLDD 179

BLAST of Cp4.1LG01g21540 vs. NCBI nr
Match: gi|694413817|ref|XP_009335156.1| (PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri])

HSP 1 Score: 142.9 bits (359), Expect = 5.1e-31
Identity = 95/175 (54.29%), Postives = 119/175 (68.00%), Query Frame = 1

Query: 4   RLRLSLCRLL-------AGKSQASTSSSSCIVRRILDSSLLPNSEFPY-KLRPDDLHFSY 63
           R +++LC+LL       A K  +  S S+   +R+ DS  LP  +    K   +  HF +
Sbjct: 5   RSQIALCKLLFRHSSNPAPKLFSLNSISTSPAQRVSDSPPLPKPDILLNKPTKNSHHFLH 64

Query: 64  --VMRPNRQFVTLQCLRRYSGGSGNSEPECDQIREVDRINLKFAEAREEIESAMESKETV 123
             +     QF   + +R++SGGS     E DQ + VD INLKFAEAREEIE AMESKETV
Sbjct: 65  PALSSSATQFAARRNVRQFSGGSD----EFDQNQVVDTINLKFAEAREEIEMAMESKETV 124

Query: 124 YFDEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           YFDEEAECARD+VKEVL++YEGLLAK+ E+ + ALQRSMGLKIEQLKAELQQL+E
Sbjct: 125 YFDEEAECARDSVKEVLELYEGLLAKVPESNKAALQRSMGLKIEQLKAELQQLNE 175

BLAST of Cp4.1LG01g21540 vs. NCBI nr
Match: gi|1009137936|ref|XP_015886320.1| (PREDICTED: uncharacterized protein LOC107421573 [Ziziphus jujuba])

HSP 1 Score: 142.9 bits (359), Expect = 5.1e-31
Identity = 91/151 (60.26%), Postives = 108/151 (71.52%), Query Frame = 1

Query: 22  SSSSCIVRRILDSSLLPN---SEFPYKLRPDDLHFSYVMRPNRQFVTLQCLRRYSGG-SG 81
           S ++   RR  +S+ LP    S+    +    LH +  + P  QFV+L   R YS    G
Sbjct: 46  SLTNTSTRRFANSAPLPKPRISDILTCINQSFLHPNISISPT-QFVSLPNTREYSSEPGG 105

Query: 82  NSEPECDQIREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLL 141
           +S  E D+ +EVD INLKFAEAREEIE AMESKETVYFDEEAECAR AVKEVLDM+EGLL
Sbjct: 106 DSIAEFDENKEVDMINLKFAEAREEIEMAMESKETVYFDEEAECARAAVKEVLDMFEGLL 165

Query: 142 AKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           AKL E+ + ALQRSMGLKIEQLKAELQQL++
Sbjct: 166 AKLPESNKAALQRSMGLKIEQLKAELQQLND 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEB4_CUCSA1.6e-5272.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1[more]
A0A0S2GL25_POPTO1.2e-3155.31Uncharacterized protein OS=Populus tomentosa PE=2 SV=1[more]
B9H7X4_POPTR6.7e-3053.80Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22000g PE=4 SV=1[more]
B9SM69_RICCO8.8e-3061.70Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296450 PE=4 SV=1[more]
M5VGY7_PRUPE1.5e-2961.83Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019583mg PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G71730.15.4e-3166.36 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659113726|ref|XP_008456723.1|1.6e-5373.81PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo][more]
gi|449446379|ref|XP_004140949.1|2.4e-5272.62PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus][more]
gi|952025388|gb|ALN96987.1|1.8e-3155.31hypothetical protein [Populus tomentosa][more]
gi|694413817|ref|XP_009335156.1|5.1e-3154.29PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri][more]
gi|1009137936|ref|XP_015886320.1|5.1e-3160.26PREDICTED: uncharacterized protein LOC107421573 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21540.1Cp4.1LG01g21540.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 89..109
score: -coord: 149..168
scor
NoneNo IPR availablePANTHERPTHR35706FAMILY NOT NAMEDcoord: 17..168
score: 6.9

The following gene(s) are paralogous to this gene:

None