CmoCh04G025830 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G025830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLate embryogenesis abundant protein, putative
LocationCmo_Chr04 : 18904252 .. 18904758 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCTGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTAGCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGTCGAATCGTCAGTTTGTAACTCTTCAGTGGTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTTTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTAATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA

mRNA sequence

ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCTGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTAGCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGTCGAATCGTCAGTTTGTAACTCTTCAGTGGTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTTTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTAATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA

Coding sequence (CDS)

ATGAGCCCTCGATTACGCCTTTCACTCTGCAGATTGCTTGCTGGAAAATCTCAGGCTTCTACTTCTTCATCTTCGTGTAGCGTTCGTCGAATTCTGGACTCTTCTCTGTTGCCAAATTCTGAGTTTCCTTACAAATTGCGACCAGATGATCTCCATTTTTCGTATGTAATGAGGTCGAATCGTCAGTTTGTAACTCTTCAGTGGTTGAGGAGGTACAGTGGTGGTTCGGGCAACTCGGAGCCGGAGTTTGATCAGATTAGAGAGGTGGACAGGATCAATCTCAAGTTTGCTGAAGCGAGAGAAGAGATAGAGTCGGCTATGGAGTCTAAAGAGACCGTTTATTTTAATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAGGAAGTTTTAGACATGTACGAGGGGCTTCTTGCGAAATTGTGCGAGAACGAGAGGAAGGCGTTGCAGAGGTCCATGGGGCTTAAGATTGAGCAGTTGAAGGCTGAGCTTCAACAGCTTGACGAGTAA
BLAST of CmoCh04G025830 vs. TrEMBL
Match: A0A0A0KEB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 121/168 (72.02%), Postives = 134/168 (79.76%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRSN 60
           MSPR RL L R L   SQ S SSSS + R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAE 120
            +FV+L   R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIESAMESKETVYF+EEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of CmoCh04G025830 vs. TrEMBL
Match: A0A0S2GL25_POPTO (Uncharacterized protein OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.9e-30
Identity = 97/179 (54.19%), Postives = 120/179 (67.04%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGK----SQASTSSSSCSVRRILDSSLLPNS---EFPYKLRP--DDL 60
           M  RL++SL +LL  +    S   T+ S    R ++ +  +PNS     P  L     +L
Sbjct: 1   MQKRLQISLFKLLLRRPFEHSPKPTNPSPLQSRALISTYFVPNSIDSRNPKFLHTPVSNL 60

Query: 61  H-FSYVMRSNRQFVTLQWLRRYSGGSGN-SEPEFDQIREVDRINLKFAEAREEIESAMES 120
           H F++  R N + +T Q  R +S  SG  S P  D  REVD INLKFAEAREEIE A ES
Sbjct: 61  HTFTHPFRPNTRALTDQNRRGHSTESGGESVPLLDVNREVDMINLKFAEAREEIEMASES 120

Query: 121 KETVYFNEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           KETVYF+EEAECAR AVKEV+D++EGLL KL E+E+ ALQRSMGLK+EQLKAELQQLD+
Sbjct: 121 KETVYFDEEAECARAAVKEVMDLFEGLLGKLPESEKAALQRSMGLKMEQLKAELQQLDD 179

BLAST of CmoCh04G025830 vs. TrEMBL
Match: A0A067JQD6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22270 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 1

Query: 65  TLQWLRRYSGGSG-NSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAECAR 124
           T +  R++S  S  N  PE D  +EVD INLKFAEAREEIE AMESKETVYFNEEAECAR
Sbjct: 77  TYKTRRKFSIESADNPVPELDVNKEVDMINLKFAEAREEIEMAMESKETVYFNEEAECAR 136

Query: 125 DAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           DAV+EVLDM+EGLL KL E E+ ALQRSMGLKIEQLKAELQQLD+
Sbjct: 137 DAVREVLDMFEGLLGKLPEKEKAALQRSMGLKIEQLKAELQQLDD 181

BLAST of CmoCh04G025830 vs. TrEMBL
Match: W9R986_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001243 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1

Query: 53  FSYVMRSNRQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKET 112
           F + ++ NR+ V+    RRY GG G    EFD  +EVD INLKFAEAREEIE A+ESK++
Sbjct: 56  FRHFVQPNRRNVSTP--RRYGGGPG----EFDVNKEVDTINLKFAEAREEIEMALESKDS 115

Query: 113 VYFNEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           VYFNEEA+CAR AVKEVLDM++GLL KL E+E+ ALQRSMGLKIEQLKAELQQLD+
Sbjct: 116 VYFNEEADCARAAVKEVLDMFDGLLGKLPESEKAALQRSMGLKIEQLKAELQQLDD 165

BLAST of CmoCh04G025830 vs. TrEMBL
Match: M5VGY7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019583mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-30
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1

Query: 52  HFSYVMRSNR-QFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESK 111
           HF +   SN  QF+    LR++SGG+      FDQ +EVD INLKFAEAREEIE AMESK
Sbjct: 15  HFLHPTFSNSSQFINRHNLRQFSGGADG----FDQNKEVDMINLKFAEAREEIEMAMESK 74

Query: 112 ETVYFNEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           ETVYF+EEAECAR AVKEVLD+++GLLAK  E+++ ALQR+MGLKIEQLKAEL+QLDE
Sbjct: 75  ETVYFDEEAECARTAVKEVLDLFDGLLAKSPEDKKAALQRAMGLKIEQLKAELKQLDE 128

BLAST of CmoCh04G025830 vs. TAIR10
Match: AT1G71730.1 (AT1G71730.1 unknown protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1

Query: 70  RRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAECARDAVKEV 129
           RRYS GS +  P  D  + VD INLKFAEAREEIE AM++KETVYFNEEAECARDAV EV
Sbjct: 80  RRYSTGSSSGSPP-DVNKVVDEINLKFAEAREEIEMAMDAKETVYFNEEAECARDAVAEV 139

Query: 130 LDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           L+M++GLL K+ E E+ +LQRSMGLKIEQLKAEL+QL+E
Sbjct: 140 LEMFQGLLGKVTEKEKASLQRSMGLKIEQLKAELEQLNE 177

BLAST of CmoCh04G025830 vs. NCBI nr
Match: gi|659113726|ref|XP_008456723.1| (PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 7.3e-54
Identity = 125/168 (74.40%), Postives = 135/168 (80.36%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRSN 60
           MSPR RL L R L G SQ S SSSS   RRILD S  P        R DDLHFSY+M SN
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKP-------WRADDLHFSYLMSSN 60

Query: 61  RQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAE 120
            QFVT Q  R +S  SG+SEP+FDQ+REVDRINLKFAEAREEIESAMESKETVYF+EEAE
Sbjct: 61  SQFVTFQSFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of CmoCh04G025830 vs. NCBI nr
Match: gi|449446379|ref|XP_004140949.1| (PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-51
Identity = 121/168 (72.02%), Postives = 134/168 (79.76%), Query Frame = 1

Query: 1   MSPRLRLSLCRLLAGKSQASTSSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSYVMRSN 60
           MSPR RL L R L   SQ S SSSS + R ILD S+ P        R DDLHF Y+M  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAE 120
            +FV+L   R YSG SG+SEP+FDQ+REVDRINLKFAEAREEIESAMESKETVYF+EEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           CARDAVKEVL++YEGLLAKL ++ERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

BLAST of CmoCh04G025830 vs. NCBI nr
Match: gi|694413817|ref|XP_009335156.1| (PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 96/175 (54.86%), Postives = 121/175 (69.14%), Query Frame = 1

Query: 4   RLRLSLCRLL-------AGKSQASTSSSSCSVRRILDSSLLPNSEFPY-KLRPDDLHFSY 63
           R +++LC+LL       A K  +  S S+   +R+ DS  LP  +    K   +  HF +
Sbjct: 5   RSQIALCKLLFRHSSNPAPKLFSLNSISTSPAQRVSDSPPLPKPDILLNKPTKNSHHFLH 64

Query: 64  --VMRSNRQFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETV 123
             +  S  QF   + +R++SGGS     EFDQ + VD INLKFAEAREEIE AMESKETV
Sbjct: 65  PALSSSATQFAARRNVRQFSGGSD----EFDQNQVVDTINLKFAEAREEIEMAMESKETV 124

Query: 124 YFNEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           YF+EEAECARD+VKEVL++YEGLLAK+ E+ + ALQRSMGLKIEQLKAELQQL+E
Sbjct: 125 YFDEEAECARDSVKEVLELYEGLLAKVPESNKAALQRSMGLKIEQLKAELQQLNE 175

BLAST of CmoCh04G025830 vs. NCBI nr
Match: gi|1009137936|ref|XP_015886320.1| (PREDICTED: uncharacterized protein LOC107421573 [Ziziphus jujuba])

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-31
Identity = 91/150 (60.67%), Postives = 108/150 (72.00%), Query Frame = 1

Query: 22  SSSSCSVRRILDSSLLPNSEFPYKLRPDDLHFSY--VMRSNRQFVTLQWLRRYSGG-SGN 81
           S ++ S RR  +S+ LP       L   +  F +  +  S  QFV+L   R YS    G+
Sbjct: 46  SLTNTSTRRFANSAPLPKPRISDILTCINQSFLHPNISISPTQFVSLPNTREYSSEPGGD 105

Query: 82  SEPEFDQIREVDRINLKFAEAREEIESAMESKETVYFNEEAECARDAVKEVLDMYEGLLA 141
           S  EFD+ +EVD INLKFAEAREEIE AMESKETVYF+EEAECAR AVKEVLDM+EGLLA
Sbjct: 106 SIAEFDENKEVDMINLKFAEAREEIEMAMESKETVYFDEEAECARAAVKEVLDMFEGLLA 165

Query: 142 KLCENERKALQRSMGLKIEQLKAELQQLDE 169
           KL E+ + ALQRSMGLKIEQLKAELQQL++
Sbjct: 166 KLPESNKAALQRSMGLKIEQLKAELQQLND 195

BLAST of CmoCh04G025830 vs. NCBI nr
Match: gi|658004240|ref|XP_008337235.1| (PREDICTED: uncharacterized protein LOC103400366 [Malus domestica])

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 95/175 (54.29%), Postives = 118/175 (67.43%), Query Frame = 1

Query: 4   RLRLSLCRLL-------AGKSQASTSSSSCSVRRILDSSLLPNSEFPYKL-RPDDLHFSY 63
           R +++LC+ L       + K  +  S S+   RR+ DS+ LP  E           HF +
Sbjct: 5   RSQIALCKWLFQHSFHPSPKLFSLNSLSTSPTRRVSDSAPLPEPEILLNTPTTTPHHFLH 64

Query: 64  VMRSNR--QFVTLQWLRRYSGGSGNSEPEFDQIREVDRINLKFAEAREEIESAMESKETV 123
              SN   QF   + +R++SGG      EFDQ + VD INLKFAEAREEIE AMESKETV
Sbjct: 65  PAXSNSPTQFAARRNVRQFSGGP----EEFDQNQVVDTINLKFAEAREEIEMAMESKETV 124

Query: 124 YFNEEAECARDAVKEVLDMYEGLLAKLCENERKALQRSMGLKIEQLKAELQQLDE 169
           YF+EEAECARD+VKEVL++YEGLLAK+ E+ + ALQRSMGLKIEQLKAELQQL+E
Sbjct: 125 YFDEEAECARDSVKEVLELYEGLLAKVPESNKAALQRSMGLKIEQLKAELQQLNE 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEB4_CUCSA1.4e-5172.02Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1[more]
A0A0S2GL25_POPTO3.9e-3054.19Uncharacterized protein OS=Populus tomentosa PE=2 SV=1[more]
A0A067JQD6_JATCU6.7e-3075.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22270 PE=4 SV=1[more]
W9R986_9ROSA6.7e-3068.10Uncharacterized protein OS=Morus notabilis GN=L484_001243 PE=4 SV=1[more]
M5VGY7_PRUPE6.7e-3067.80Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019583mg PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G71730.12.1e-3071.72 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659113726|ref|XP_008456723.1|7.3e-5474.40PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo][more]
gi|449446379|ref|XP_004140949.1|2.0e-5172.02PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus][more]
gi|694413817|ref|XP_009335156.1|1.0e-3154.86PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri][more]
gi|1009137936|ref|XP_015886320.1|3.0e-3160.67PREDICTED: uncharacterized protein LOC107421573 [Ziziphus jujuba][more]
gi|658004240|ref|XP_008337235.1|3.9e-3154.29PREDICTED: uncharacterized protein LOC103400366 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025830.1CmoCh04G025830.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 149..168
score: -coord: 89..109
scor
NoneNo IPR availablePANTHERPTHR35706FAMILY NOT NAMEDcoord: 53..168
score: 3.6
NoneNo IPR availablePANTHERPTHR35706:SF1F14O23.11 PROTEINcoord: 53..168
score: 3.6

The following gene(s) are paralogous to this gene:

None