ClCG08G007260 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G007260
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Late embryogenesis abundant protein
Location	CG_Chr08 : 19660031 .. 19660510 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTCGTTTACGCCTTCCACTCTACAGATTGCTTGCCGGAAAATCTCAGGCTTCAATTTCTTCATCTTCGTATAGTTTTCAGCGAATTCTGGATTTCACTGTGAACCCAAAATCTGAGTTTCCTAACAAATGGCGGGCAGATGATCTCCATTTTTCGTATCTAATGAGGTCCAATCGGAGGTACAGTGGTGGTTCGGGCACATCGGAGCCCGAATTCGATCAGGTTAGAGAGGTAGACAGGATCAATCTCAAGTTTGCCGAAGCGAGGGAAGAGATAGAGTCAGCTATGGAGTCTAAAGAGACCGTATATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAAGAAGTTTTAGATATGTACGAGGGGCTTCTGGCGAAGTTGCCCGAGAGCGAAAGGAAGGCGTTGCAGAGGTCAATGGGGCTTAAGATCGAACAGCTGAAGGCTGAGCTCAAACAGCTTGACGAGTAA

mRNA sequence

ATGAGTCCTCGTTTACGCCTTCCACTCTACAGATTGCTTGCCGGAAAATCTCAGGCTTCAATTTCTTCATCTTCGTATAGTTTTCAGCGAATTCTGGATTTCACTGTGAACCCAAAATCTGAGTTTCCTAACAAATGGCGGGCAGATGATCTCCATTTTTCGTATCTAATGAGGTCCAATCGGAGGTACAGTGGTGGTTCGGGCACATCGGAGCCCGAATTCGATCAGGTTAGAGAGGTAGACAGGATCAATCTCAAGTTTGCCGAAGCGAGGGAAGAGATAGAGTCAGCTATGGAGTCTAAAGAGACCGTATATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAAGAAGTTTTAGATATGTACGAGGGGCTTCTGGCGAAGTTGCCCGAGAGCGAAAGGAAGGCGTTGCAGAGGTCAATGGGGCTTAAGATCGAACAGCTGAAGGCTGAGCTCAAACAGCTTGACGAGTAA

Coding sequence (CDS)

ATGAGTCCTCGTTTACGCCTTCCACTCTACAGATTGCTTGCCGGAAAATCTCAGGCTTCAATTTCTTCATCTTCGTATAGTTTTCAGCGAATTCTGGATTTCACTGTGAACCCAAAATCTGAGTTTCCTAACAAATGGCGGGCAGATGATCTCCATTTTTCGTATCTAATGAGGTCCAATCGGAGGTACAGTGGTGGTTCGGGCACATCGGAGCCCGAATTCGATCAGGTTAGAGAGGTAGACAGGATCAATCTCAAGTTTGCCGAAGCGAGGGAAGAGATAGAGTCAGCTATGGAGTCTAAAGAGACCGTATATTTTGATGAAGAGGCCGAGTGTGCTCGGGATGCTGTGAAAGAAGTTTTAGATATGTACGAGGGGCTTCTGGCGAAGTTGCCCGAGAGCGAAAGGAAGGCGTTGCAGAGGTCAATGGGGCTTAAGATCGAACAGCTGAAGGCTGAGCTCAAACAGCTTGACGAGTAA

Protein sequence

MSPRLRLPLYRLLAGKSQASISSSSYSFQRILDFTVNPKSEFPNKWRADDLHFSYLMRSNRRYSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE

Homology

[Close]

BLAST of ClCG08G007260 vs. TrEMBL
Match: A0A0A0KEB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.5e-58
Identity = 127/168 (75.60%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MSPRLRLPLYRLLAGKSQASISSSSYSFQRILDFTVNPKSEFPNKWRADDLHFSYLMRSN 60
           MSPR RLPL+R L   SQ SISSSS +F+ ILDF+V P       WRADDLHF YLM  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RR---------YSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
            R         YSG SG+SEP+FDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 160
           CARDAVKEVL++YEGLLAKL +SERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

[Close]

BLAST of ClCG08G007260 vs. TrEMBL
Match: W9R986_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001243 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 84/129 (65.12%), Postives = 97/129 (75.19%), Query Frame = 1


Query: 35  TVNPKSEFPNKWRADDLHFSYLMRSN----RRYSGGSGTSEPEFDQVREVDRINLKFAEA 94
           T +PK   PN   +   HF    R N    RRY GG G    EFD  +EVD INLKFAEA
Sbjct: 41  TNSPKPTIPNALISTFRHFVQPNRRNVSTPRRYGGGPG----EFDVNKEVDTINLKFAEA 100

Query: 95  REEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQL 154
           REEIE A+ESK++VYF+EEA+CAR AVKEVLDM++GLL KLPESE+ ALQRSMGLKIEQL
Sbjct: 101 REEIEMALESKDSVYFNEEADCARAAVKEVLDMFDGLLGKLPESEKAALQRSMGLKIEQL 160

Query: 155 KAELKQLDE 160
           KAEL+QLD+
Sbjct: 161 KAELQQLDD 165

[Close]

BLAST of ClCG08G007260 vs. TrEMBL
Match: B9SM69_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296450 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.7e-33
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 29  QRILDFTVNPKSEFPNKWRADDLHFSY----LMRSNRRYSGGSGTSEPEFDQVREVDRIN 88
           ++IL F+ NP+ +        DLH  Y     +R++   SGG     PE D  +EVD IN
Sbjct: 76  RKILYFSTNPRHQ--------DLHSCYPTCNALRNHSTESGGGPV--PELDVNKEVDMIN 135

Query: 89  LKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESERKALQRSMG 148
           LKFAEAREEIE AMESKETVYF+EEAECAR AVKEV DM++GLL KLP+SER AL+RSMG
Sbjct: 136 LKFAEAREEIEMAMESKETVYFNEEAECARAAVKEVFDMFDGLLGKLPDSERAALRRSMG 195

Query: 149 LKIEQLKAELKQLDE 160
           LKIEQLKAEL+QLD+
Sbjct: 196 LKIEQLKAELQQLDD 200

[Close]

BLAST of ClCG08G007260 vs. TrEMBL
Match: V7BFA5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G084500g PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.1e-33
Identity = 80/106 (75.47%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 55  YLMRSN-RRYSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECA 114
           Y +R N R +SGGSG    E D  +EVD INLKFAEAREEIE A+ESK+TVYFDEEAECA
Sbjct: 51  YPIRHNPRSFSGGSG----ELDHTKEVDTINLKFAEAREEIEMALESKDTVYFDEEAECA 110

Query: 115 RDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 160
           RDAV EVL ++EGLLAKLPE ER ALQRSMGLKIEQLKAE+ QLDE
Sbjct: 111 RDAVNEVLGLFEGLLAKLPEKERGALQRSMGLKIEQLKAEIAQLDE 152

[Close]

BLAST of ClCG08G007260 vs. TrEMBL
Match: A0A151S8D2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_027136 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 55  YLMRSNRR-YSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECA 114
           + +R NRR  SGGSG    E D  +EVD INLKFAEAREEIE A+ESK+TVYFDEEAECA
Sbjct: 54  FAIRCNRRSLSGGSG----ELDHTKEVDSINLKFAEAREEIEMALESKDTVYFDEEAECA 113

Query: 115 RDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 160
           R AV EVL M+EGLLAKLPE E+ ALQRSMGLKIEQLKAE++QLDE
Sbjct: 114 RAAVNEVLSMFEGLLAKLPEGEKGALQRSMGLKIEQLKAEIRQLDE 155

[Close]

BLAST of ClCG08G007260 vs. TAIR10
Match: AT1G71730.1 (AT1G71730.1 unknown protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 80/143 (55.94%), Postives = 100/143 (69.93%), Query Frame = 1


Query: 17  SQASISSSSYSFQRILDFTVNPKSEFPNKWRADDLHFSYLMRSNRRYSGGSGTSEPEFDQ 76
           S++S+S +S S    L F +      PN       + S+ + + RRYS GS +  P  D 
Sbjct: 49  SKSSLSEASSSSSSSLIFQI------PN-------NASFFLENQRRYSTGSSSGSPP-DV 108

Query: 77  VREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESER 136
            + VD INLKFAEAREEIE AM++KETVYF+EEAECARDAV EVL+M++GLL K+ E E+
Sbjct: 109 NKVVDEINLKFAEAREEIEMAMDAKETVYFNEEAECARDAVAEVLEMFQGLLGKVTEKEK 168

Query: 137 KALQRSMGLKIEQLKAELKQLDE 160
            +LQRSMGLKIEQLKAEL+QL+E
Sbjct: 169 ASLQRSMGLKIEQLKAELEQLNE 177

[Close]

BLAST of ClCG08G007260 vs. NCBI nr
Match: gi|659113726|ref|XP_008456723.1| (PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 129/168 (76.79%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 1   MSPRLRLPLYRLLAGKSQASISSSSYSFQRILDFTVNPKSEFPNKWRADDLHFSYLMRSN 60
           MSPR RLPLYR L G SQ SISSSS  F+RILDF+  P       WRADDLHFSYLM SN
Sbjct: 1   MSPRSRLPLYRFLLGISQPSISSSSSCFRRILDFSAKP-------WRADDLHFSYLMSSN 60

Query: 61  ---------RRYSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
                    R +S  SG+SEP+FDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SQFVTFQSFRSFSAASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 160
           CARDAVKEVL++YEGLLAKL +SERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

[Close]

BLAST of ClCG08G007260 vs. NCBI nr
Match: gi|449446379|ref|XP_004140949.1| (PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 7.9e-58
Identity = 127/168 (75.60%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MSPRLRLPLYRLLAGKSQASISSSSYSFQRILDFTVNPKSEFPNKWRADDLHFSYLMRSN 60
           MSPR RLPL+R L   SQ SISSSS +F+ ILDF+V P       WRADDLHF YLM  N
Sbjct: 1   MSPRSRLPLHRFLLRISQPSISSSSSTFRPILDFSVKP-------WRADDLHFPYLMSLN 60

Query: 61  RR---------YSGGSGTSEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120
            R         YSG SG+SEP+FDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE
Sbjct: 61  SRFVSLHCFRSYSGASGSSEPDFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAE 120

Query: 121 CARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQLKAELKQLDE 160
           CARDAVKEVL++YEGLLAKL +SERKALQRSMGLKIEQLKAEL QLDE
Sbjct: 121 CARDAVKEVLELYEGLLAKLSDSERKALQRSMGLKIEQLKAELNQLDE 161

[Close]

BLAST of ClCG08G007260 vs. NCBI nr
Match: gi|703108711|ref|XP_010099103.1| (hypothetical protein L484_001243 [Morus notabilis])

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-33
Identity = 84/129 (65.12%), Postives = 97/129 (75.19%), Query Frame = 1


Query: 35  TVNPKSEFPNKWRADDLHFSYLMRSN----RRYSGGSGTSEPEFDQVREVDRINLKFAEA 94
           T +PK   PN   +   HF    R N    RRY GG G    EFD  +EVD INLKFAEA
Sbjct: 41  TNSPKPTIPNALISTFRHFVQPNRRNVSTPRRYGGGPG----EFDVNKEVDTINLKFAEA 100

Query: 95  REEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESERKALQRSMGLKIEQL 154
           REEIE A+ESK++VYF+EEA+CAR AVKEVLDM++GLL KLPESE+ ALQRSMGLKIEQL
Sbjct: 101 REEIEMALESKDSVYFNEEADCARAAVKEVLDMFDGLLGKLPESEKAALQRSMGLKIEQL 160

Query: 155 KAELKQLDE 160
           KAEL+QLD+
Sbjct: 161 KAELQQLDD 165

[Close]

BLAST of ClCG08G007260 vs. NCBI nr
Match: gi|694413817|ref|XP_009335156.1| (PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri])

HSP 1 Score: 150.6 bits (379), Expect = 2.3e-33
Identity = 90/150 (60.00%), Postives = 106/150 (70.67%), Query Frame = 1


Query: 22  SSSSYSFQRILDFTVNPKSEFP-NKWRADDLHFSY-----------LMRSNRRYSGGSGT 81
           S S+   QR+ D    PK +   NK   +  HF +             R+ R++SGGS  
Sbjct: 30  SISTSPAQRVSDSPPLPKPDILLNKPTKNSHHFLHPALSSSATQFAARRNVRQFSGGSD- 89

Query: 82  SEPEFDQVREVDRINLKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLA 141
              EFDQ + VD INLKFAEAREEIE AMESKETVYFDEEAECARD+VKEVL++YEGLLA
Sbjct: 90  ---EFDQNQVVDTINLKFAEAREEIEMAMESKETVYFDEEAECARDSVKEVLELYEGLLA 149

Query: 142 KLPESERKALQRSMGLKIEQLKAELKQLDE 160
           K+PES + ALQRSMGLKIEQLKAEL+QL+E
Sbjct: 150 KVPESNKAALQRSMGLKIEQLKAELQQLNE 175

[Close]

BLAST of ClCG08G007260 vs. NCBI nr
Match: gi|223533511|gb|EEF35251.1| (hypothetical protein RCOM_0296450 [Ricinus communis])

HSP 1 Score: 149.1 bits (375), Expect = 6.7e-33
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 29  QRILDFTVNPKSEFPNKWRADDLHFSY----LMRSNRRYSGGSGTSEPEFDQVREVDRIN 88
           ++IL F+ NP+ +        DLH  Y     +R++   SGG     PE D  +EVD IN
Sbjct: 76  RKILYFSTNPRHQ--------DLHSCYPTCNALRNHSTESGGGPV--PELDVNKEVDMIN 135

Query: 89  LKFAEAREEIESAMESKETVYFDEEAECARDAVKEVLDMYEGLLAKLPESERKALQRSMG 148
           LKFAEAREEIE AMESKETVYF+EEAECAR AVKEV DM++GLL KLP+SER AL+RSMG
Sbjct: 136 LKFAEAREEIEMAMESKETVYFNEEAECARAAVKEVFDMFDGLLGKLPDSERAALRRSMG 195

Query: 149 LKIEQLKAELKQLDE 160
           LKIEQLKAEL+QLD+
Sbjct: 196 LKIEQLKAELQQLDD 200

The following BLAST results are available for this feature:

BLAST of ClCG08G007260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEB4_CUCSA	5.5e-58	75.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052810 PE=4 SV=1	[more]
W9R986_9ROSA	1.2e-33	65.12	Uncharacterized protein OS=Morus notabilis GN=L484_001243 PE=4 SV=1	[more]
B9SM69_RICCO	4.7e-33	62.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296450 PE=4 SV=1	[more]
V7BFA5_PHAVU	6.1e-33	75.47	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G084500g PE=4 SV=1	[more]
A0A151S8D2_CAJCA	1.8e-32	74.53	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_027136 PE=4 SV=1	[more]

BLAST of ClCG08G007260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71730.1	1.4e-33	55.94	unknown protein	[more]

BLAST of ClCG08G007260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113726\|ref\|XP_008456723.1\|	1.4e-59	76.79	PREDICTED: uncharacterized protein LOC103496582 [Cucumis melo]	[more]
gi\|449446379\|ref\|XP_004140949.1\|	7.9e-58	75.60	PREDICTED: uncharacterized protein LOC101219561 [Cucumis sativus]	[more]
gi\|703108711\|ref\|XP_010099103.1\|	1.8e-33	65.12	hypothetical protein L484_001243 [Morus notabilis]	[more]
gi\|694413817\|ref\|XP_009335156.1\|	2.3e-33	60.00	PREDICTED: uncharacterized protein LOC103927906 [Pyrus x bretschneideri]	[more]
gi\|223533511\|gb\|EEF35251.1\|	6.7e-33	62.22	hypothetical protein RCOM_0296450 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G007260.1	ClCG08G007260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 80..100 scor
None	No IPR available	PANTHER	PTHR35706	FAMILY NOT NAMED	coord: 55..159 score: 9.8
None	No IPR available	PANTHER	PTHR35706:SF1	F14O23.11 PROTEIN	coord: 55..159 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G007260	Csa6G052810	Cucumber (Chinese Long) v2	cuwcgB501
ClCG08G007260	MELO3C019969	Melon (DHL92) v3.5.1	mewcgB303
ClCG08G007260	Cla013793	Watermelon (97103) v1	wcgwmB400
ClCG08G007260	Cla97C08G149960	Watermelon (97103) v2	wcgwmbB336
ClCG08G007260	Bhi04G001251	Wax gourd	wcgwgoB635
ClCG08G007260	CSPI06G04580	Wild cucumber (PI 183967)	cpiwcgB527
ClCG08G007260	Cucsa.364000	Cucumber (Gy14) v1	cgywcgB621
ClCG08G007260	CmaCh04G024680	Cucurbita maxima (Rimu)	cmawcgB683
ClCG08G007260	CmoCh04G025830	Cucurbita moschata (Rifu)	cmowcgB685
ClCG08G007260	Cp4.1LG01g21540	Cucurbita pepo (Zucchini)	cpewcgB419
ClCG08G007260	CsGy6G004560	Cucumber (Gy14) v2	cgybwcgB459
ClCG08G007260	MELO3C019969.2	Melon (DHL92) v3.6.1	medwcgB298
ClCG08G007260	Carg15811	Silver-seed gourd	carwcgB0068
ClCG08G007260	CsaV3_6G004930	Cucumber (Chinese Long) v3	cucwcgB519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G007260	Cucurbita maxima (Rimu)	cmawcgB272
ClCG08G007260	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G007260	Cucurbita moschata (Rifu)	cmowcgB264
ClCG08G007260	Cucurbita pepo (Zucchini)	cpewcgB184
ClCG08G007260	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G007260	Bottle gourd (USVL1VR-Ls)	lsiwcgB444
ClCG08G007260	Silver-seed gourd	carwcgB0806
ClCG08G007260	Wax gourd	wcgwgoB624
ClCG08G007260	Cucumber (Gy14) v1	cgywcgB625