Cp4.1LG01g17360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 12170147 .. 12170398 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTATACCCGAAGCCATCGTCGTCCTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

mRNA sequence

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTATACCCGAAGCCATCGTCGTCCTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

Coding sequence (CDS)

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTATACCCGAAGCCATCGTCGTCCTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGAKSLSIQKGDRSPLILKHQVKNDSSTL
Homology
[Close]
BLAST of Cp4.1LG01g17360 vs. TrEMBL
Match: A0A0A0KWJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGDGAK 60
          MAGLQYNFFPTDLLYPKP    SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD  K
Sbjct: 1  MAGLQYNFFPTDLLYPKP----SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPK 60

Query: 61 S--LSIQKGDRSPLILKHQVKNDSST 83
          S  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 SRLMISQKVDRSPLILKHQIKSTSSS 82

[Close]
BLAST of Cp4.1LG01g17360 vs. TrEMBL
Match: E5GC02_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.9e-20
Identity = 62/85 (72.94%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDGAKS 60
          MAGLQYNFFPTDLLYPKP    SSSSSSS+AINRASVTFK  +RGN+ EED DHGD  KS
Sbjct: 1  MAGLQYNFFPTDLLYPKP----SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKS 60

Query: 61 --LSIQKGDRSPLILKHQVKNDSST 83
             S +  DRSPLILKHQ K+ SST
Sbjct: 61 RLFSQKVADRSPLILKHQSKSTSST 81

[Close]
BLAST of Cp4.1LG01g17360 vs. NCBI nr
Match: gi|700198817|gb|KGN53975.1| (hypothetical protein Csa_4G218340 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGDGAK 60
          MAGLQYNFFPTDLLYPKP    SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD  K
Sbjct: 1  MAGLQYNFFPTDLLYPKP----SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPK 60

Query: 61 S--LSIQKGDRSPLILKHQVKNDSST 83
          S  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 SRLMISQKVDRSPLILKHQIKSTSSS 82

[Close]
BLAST of Cp4.1LG01g17360 vs. NCBI nr
Match: gi|307136158|gb|ADN34001.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.4 bits (259), Expect = 9.9e-20
Identity = 62/85 (72.94%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDGAKS 60
          MAGLQYNFFPTDLLYPKP    SSSSSSS+AINRASVTFK  +RGN+ EED DHGD  KS
Sbjct: 1  MAGLQYNFFPTDLLYPKP----SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKS 60

Query: 61 --LSIQKGDRSPLILKHQVKNDSST 83
             S +  DRSPLILKHQ K+ SST
Sbjct: 61 RLFSQKVADRSPLILKHQSKSTSST 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWJ2_CUCSA1.4e-2073.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1[more]
E5GC02_CUCME6.9e-2072.94Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cp4.1LG01g17360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198817|gb|KGN53975.1|2.0e-2073.26hypothetical protein Csa_4G218340 [Cucumis sativus][more]
gi|307136158|gb|ADN34001.1|9.9e-2072.94hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17360.1Cp4.1LG01g17360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17360CmaCh03G002010Cucurbita maxima (Rimu)cmacpeB666
Cp4.1LG01g17360CmoCh03G001830Cucurbita moschata (Rifu)cmocpeB617
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17360Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g17360Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g17360Cucurbita maxima (Rimu)cmacpeB725
Cp4.1LG01g17360Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17360Cucurbita moschata (Rifu)cmocpeB677
Cp4.1LG01g17360Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17360Cucurbita moschata (Rifu)cmocpeB682
Cp4.1LG01g17360Cucurbita moschata (Rifu)cmocpeB686
Cp4.1LG01g17360Wild cucumber (PI 183967)cpecpiB453
Cp4.1LG01g17360Cucumber (Chinese Long) v2cpecuB448
Cp4.1LG01g17360Bottle gourd (USVL1VR-Ls)cpelsiB321
Cp4.1LG01g17360Melon (DHL92) v3.5.1cpemeB371
Cp4.1LG01g17360Melon (DHL92) v3.6.1cpemedB429
Cp4.1LG01g17360Silver-seed gourdcarcpeB0314
Cp4.1LG01g17360Wax gourdcpewgoB0540