CmaCh03G002010 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G002010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr03 : 3077476 .. 3078610 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTCCAATACAACTTCTTCCCCACCGATCTCCTGTACCCGAAGCCGTCGTCGTCGTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAAGTGTGACCTTCAAACAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGACCCAAAAGCTTGAGCATTCAAAAGGCTGATAGATCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTTTCTGAATATTCATCTCATGAATGATTCAATCATGGGCTCTCTTCAAAAAAGCTTTGTTTTTTTTTGGTTTTGGTTTTTGATCCTTAATGTTTATTGTTCTCCTATGAGTAATGAAAACTTGTACGTATATAAGCTTCACATTTTGGAGTAATTGCAAATTCATATTTCTATCAATATGAGTAATGAAACAAAAATGAAGATTATTGACTATTATTTTCTGTGTTTTCTGTAATTCTTTTCATTTTTTGATCCATAATATCGTTTCGTCTTTGAATTCTAATGTCAAAAAGCTTCAATATCGCTTGATAATGATGAAATATATATGGGTTGGGTCAGGAAAATCTTTTGGATCCACCCGAAATTTCGAGTTGATTTGTTTGGTGTTGAGCAACCCGAATAGAATTCACAACTCAATCCAACCTAAGCTAACAAACCCTTCATTTTCGAGTTGTGTAGGGTTGGGTTATAAATCTATGTTCGAGTTAAAAAAATGTCAACGGCGAACTGACCTAAATTTTTCGATTTTCTAAAGATTTAGCTCAACTCCAAACTCAAAAAAATAAACAAGAAAAAAAAAAAGAAATCTAACCCAACCCAACCTGTCGATATCTATATAAAATTATATTTTATTGAGATGAAAGCAAAGTTGGTTATATATTTAATTTGTAAAGGAAAATGTATGTATAATTAAAAATTGATGTGCACAAATATGATACGTAACTTACCACATTTTGGCTTTTTGAAAGAAATCAATTATTTATTATTTTTTTTTTTTAATGGATGATTTTAAGATTAGGAAATGCATCTAACTTTTGGTTTATGTTATTGTTTTTGTCCACTTGTTTATTTATTTAATATTTTAAAAAGGAGGCTGTTAGTATTTCGGTCTAA

mRNA sequence

ATGGCTGGGCTCCAATACAACTTCTTCCCCACCGATCTCCTGTACCCGAAGCCGTCGTCGTCGTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAAGTGTGACCTTCAAACAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGACCCAAAAGCTTGAGCATTCAAAAGGCTGATAGATCACCCTTGATTCTCAAGCATCAAGAGGCTGTTAGTATTTCGGTCTAA

Coding sequence (CDS)

ATGGCTGGGCTCCAATACAACTTCTTCCCCACCGATCTCCTGTACCCGAAGCCGTCGTCGTCGTCTTCTTCTTCTTCTTCCTCGGAAGCCATTAATAGGGCAAGTGTGACCTTCAAACAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGACCCAAAAGCTTGAGCATTCAAAAGGCTGATAGATCACCCTTGATTCTCAAGCATCAAGAGGCTGTTAGTATTTCGGTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSSSSEAINRASVTFKQPVRGNQDEEDDHGDGPKSLSIQKADRSPLILKHQEAVSISV
Homology
[Close]
BLAST of CmaCh03G002010 vs. TrEMBL
Match: A0A0A0KWJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSEAINRASVTFKQPVRGNQ-DEED-DHGDGPKS 60
          MAGLQYNFFPTDLLYPKP   SSSSSSSEAINRASVTFK P+RGN+ D+ED DHGD PKS
Sbjct: 1  MAGLQYNFFPTDLLYPKP---SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKS 60

Query: 61 --LSIQKADRSPLILKHQ 75
            +  QK DRSPLILKHQ
Sbjct: 61 RLMISQKVDRSPLILKHQ 75

[Close]
BLAST of CmaCh03G002010 vs. TrEMBL
Match: E5GC02_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-19
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSEAINRASVTFKQPVRGNQDEED-DHGDGPKS- 60
          MAGLQYNFFPTDLLYPKP   SSSSSSSEAINRASVTFK  +RGN+ EED DHGD  KS 
Sbjct: 1  MAGLQYNFFPTDLLYPKP---SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSR 60

Query: 61 -LSIQKADRSPLILKHQ 75
            S + ADRSPLILKHQ
Sbjct: 61 LFSQKVADRSPLILKHQ 74

[Close]
BLAST of CmaCh03G002010 vs. NCBI nr
Match: gi|700198817|gb|KGN53975.1| (hypothetical protein Csa_4G218340 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSEAINRASVTFKQPVRGNQ-DEED-DHGDGPKS 60
          MAGLQYNFFPTDLLYPKP   SSSSSSSEAINRASVTFK P+RGN+ D+ED DHGD PKS
Sbjct: 1  MAGLQYNFFPTDLLYPKP---SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKS 60

Query: 61 --LSIQKADRSPLILKHQ 75
            +  QK DRSPLILKHQ
Sbjct: 61 RLMISQKVDRSPLILKHQ 75

[Close]
BLAST of CmaCh03G002010 vs. NCBI nr
Match: gi|307136158|gb|ADN34001.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSEAINRASVTFKQPVRGNQDEED-DHGDGPKS- 60
          MAGLQYNFFPTDLLYPKP   SSSSSSSEAINRASVTFK  +RGN+ EED DHGD  KS 
Sbjct: 1  MAGLQYNFFPTDLLYPKP---SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSR 60

Query: 61 -LSIQKADRSPLILKHQ 75
            S + ADRSPLILKHQ
Sbjct: 61 LFSQKVADRSPLILKHQ 74

The following BLAST results are available for this feature:
BLAST of CmaCh03G002010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWJ2_CUCSA1.4e-2079.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1[more]
E5GC02_CUCME4.4e-1977.92Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CmaCh03G002010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198817|gb|KGN53975.1|2.0e-2079.49hypothetical protein Csa_4G218340 [Cucumis sativus][more]
gi|307136158|gb|ADN34001.1|6.3e-1977.92hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G002010.1CmaCh03G002010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G002010CmoCh03G001830Cucurbita moschata (Rifu)cmacmoB655
CmaCh03G002010Cp4.1LG01g17360Cucurbita pepo (Zucchini)cmacpeB666
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G002010Watermelon (97103) v2cmawmbB692
CmaCh03G002010Wax gourdcmawgoB0793
CmaCh03G002010Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G002010Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G002010Cucurbita moschata (Rifu)cmacmoB668
CmaCh03G002010Watermelon (Charleston Gray)cmawcgB593
CmaCh03G002010Watermelon (97103) v1cmawmB642
CmaCh03G002010Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G002010Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G002010Bottle gourd (USVL1VR-Ls)cmalsiB601
CmaCh03G002010Silver-seed gourdcarcmaB0812
CmaCh03G002010Silver-seed gourdcarcmaB1427