CmoCh03G001830 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G001830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 2845694 .. 2845954 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

mRNA sequence

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

Coding sequence (CDS)

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA
Homology
[Close]
BLAST of CmoCh03G001830 vs. TrEMBL
Match: A0A0A0KWJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-20
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGD 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGD 60

Query: 61 GAKS--LSIQKGDRSPLILKHQVKNDSST 86
            KS  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 EPKSRLMISQKVDRSPLILKHQIKSTSSS 82

[Close]
BLAST of CmoCh03G001830 vs. TrEMBL
Match: E5GC02_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-19
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDG 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK  +RGN+ EED DHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDE 60

Query: 61 AKS--LSIQKGDRSPLILKHQVKNDSST 86
           KS   S +  DRSPLILKHQ K+ SST
Sbjct: 61 RKSRLFSQKVADRSPLILKHQSKSTSST 81

[Close]
BLAST of CmoCh03G001830 vs. NCBI nr
Match: gi|700198817|gb|KGN53975.1| (hypothetical protein Csa_4G218340 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-19
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGD 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGD 60

Query: 61 GAKS--LSIQKGDRSPLILKHQVKNDSST 86
            KS  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 EPKSRLMISQKVDRSPLILKHQIKSTSSS 82

[Close]
BLAST of CmoCh03G001830 vs. NCBI nr
Match: gi|307136158|gb|ADN34001.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDG 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK  +RGN+ EED DHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDE 60

Query: 61 AKS--LSIQKGDRSPLILKHQVKNDSST 86
           KS   S +  DRSPLILKHQ K+ SST
Sbjct: 61 RKSRLFSQKVADRSPLILKHQSKSTSST 81

The following BLAST results are available for this feature:
BLAST of CmoCh03G001830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWJ2_CUCSA7.2e-2070.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G218340 PE=4 SV=1[more]
E5GC02_CUCME3.6e-1970.45Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CmoCh03G001830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198817|gb|KGN53975.1|1.0e-1970.79hypothetical protein Csa_4G218340 [Cucumis sativus][more]
gi|307136158|gb|ADN34001.1|5.1e-1970.45hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001830.1CmoCh03G001830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G001830CmaCh03G002010Cucurbita maxima (Rimu)cmacmoB655
CmoCh03G001830Lsi01G018040Bottle gourd (USVL1VR-Ls)cmolsiB584
CmoCh03G001830Cp4.1LG01g17360Cucurbita pepo (Zucchini)cmocpeB617
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G001830Bottle gourd (USVL1VR-Ls)cmolsiB600
CmoCh03G001830Melon (DHL92) v3.6.1cmomedB680
CmoCh03G001830Melon (DHL92) v3.6.1cmomedB697
CmoCh03G001830Silver-seed gourdcarcmoB0310
CmoCh03G001830Silver-seed gourdcarcmoB0644
CmoCh03G001830Watermelon (97103) v2cmowmbB647
CmoCh03G001830Watermelon (97103) v2cmowmbB666
CmoCh03G001830Wax gourdcmowgoB0795
CmoCh03G001830Cucurbita moschata (Rifu)cmocmoB463
CmoCh03G001830Cucumber (Gy14) v1cgycmoB0937
CmoCh03G001830Cucurbita maxima (Rimu)cmacmoB865
CmoCh03G001830Melon (DHL92) v3.5.1cmomeB608
CmoCh03G001830Watermelon (Charleston Gray)cmowcgB593
CmoCh03G001830Watermelon (97103) v1cmowmB630
CmoCh03G001830Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G001830Cucurbita pepo (Zucchini)cmocpeB622