Cp4.1LG01g17340 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g17340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA polymerase II transcriptional coactivator
LocationCp4.1LG01 : 12180566 .. 12189290 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTGTTTTTTTAAAAGTTTTAATTGTTTTTTTTTAAGGAAATGGTTAGAAATTTGAAAATGTTTTTTATTACACATGAAATTGTATTGCACTTGCTGTATTGAAGAGCACACATACTCGGGAAGGAGAAGAAGACCACGAGAAAGGAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGGTCTTTCACTTCACCTTCCTCCTTCTGTTTTTAGTGCCTTTTATGTTGGTTTCAATTTTTTATTGGTTTTTTTTTTTGACCGCAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTTCTCTCCCTATCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAATTGATTTTTCGTTTTGGATTTAGAAGTTTGTTTGCTGTTTTTCTAGGGTTTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGGCTTGATATTTGTTTTGAATTGTCTAATGATGGTCGAGGGAGAATTTGGTGGTGAAATGAAATTCTAATGTGGGGAACTTTTCTTGCTTCATTGTTGTGTTTCACTGTCTACACGATCACTTGGGCTGAACCAATAGTTTGATTCAGCTCCATTTTAGTTGTTGGAGATTCTTTTTGCATCAGATATTGAGATTGTAAAGCGTTACTCCATATTTTTTCTCTCTAGAATTTGATGTAGCGGTTTAAGTAATGATGTTTGGAAACTGCATTTATGGCTTTATCATAGATGTTTGTTCAAAGTGAAAAGGAAATATTTTTGGATGATCGTATGTATTCTTATGAACTTCAGTTGGTCTACAGGCAATTTTATAAAATTTACCTTTCTCTAAACTTTTGCTATGACATAATTTAGTGAGGTTCCAATTTTTATGATCCACCAAGAATTTTGATTTGGGGATAGTTTTCTTATCTGGTTGATGTAAAATAGTTGTTGGGAATATTTAAGGAAGAACGTATGTATAGGGATGAAAGAATAGATTTTGAAGGGCTGGGTAGAGGGTTTGAAGAAAAAAAAGAAAAGAAAAAAAGATGGTGAAGAAGAGACTTGAGTATGCCCAATTGGGCTGGAAACTTACCTTTGTAGTGACCAGACGTCAATTTCACACTAATTGATACAGTATTACGGAAGCCTTAAAGGAAGGTTATACATTAAGAATCACATGCTCAATCCTTTGCTATGAAGAGTAGTAAAGGAGGAGTTAGATTAAGGTGGGCTTTCTCGCTCAAGTTGAAAGGTATTGGCGAACAACATGGTAAACTTGACATGAAGTGATACCATGTCATGGGGAATGGAGAAGCTTCATGAAATACCTTTGATGTTATGGAAAGAAGAGATTGTTGAAGCTATATGTTAAAATTGCGGGAGAAAAGCTTTGAATACGCCTGCTTTCTTGGAGGCTGCAAGAAAACTATAGTGACTTCCACCATTTGAAACGGAGATCGCATATCCTAACGAAGAAAATTATGTGGTTCAAATAGTTGGTAGAGTGAGGAGTGTCCTTGCAGGATTTTTAGAAGCAGCTTCCAAGTTCAAGGTGTTTAATTCTGTTTGAATAGTTGGTGTTGACACTTAAAGTGAAGTAGGAGTAGAAGGTGGGCCGAACAATATTTTCACAATTCATGTAAGATAAAATGGGGGTTCAAATGATAAAAAAATTCTGTTGTTGTTGAAGTTTACTTATACAAGTTGCTGATTAAGGAGAAGGTGGAATGTCTGGATTTGGAAGAGGAAGATGGTTTATTTAAATATAAATAGTTGGTTAATTTAATTGACAAAGATGGTTTATCGCAAAGTCACTTGTTTATGCAATGTACATGCGCTCAGAATTTCTGGACAACGATTCTCAATATATTTGGATGACATCTCATATTTCCTAGGGAGGTAAAGGAATTTTGAGATATGGCCTTAACGTACCACCCTTTCAAGAACGCAAAAGCCCTATTGTGGACAAACCTCATCATGGCTTTCTTTTGGAACCTATGGAAAGAAAGAAATCAGAGAATATTTGCAGACAAGAAACAGACCTACACAAAACTTTTCGACAATGTTGTTTACCAAGCTATATCTTGGTGTTAATTGTCTAATATTTTTACTTCCTATAGTTATACCTCCCTCATTGCAAATTGGGAAGGTCTTTTGTAAACACCATGGATTATACATCCCTCTTGTAAATTTCAATCATCAATGAAATTGTCTCCTATAAAAAAAATAAAAATAAATAATTAATTGGCATAGATGTTAGAGAAAAAGTCATATGCCTAGGGGCTTGCATGGAAAAATGAAACTTCAGAGTTTTTAAGGGAATTTGGAAAGGTTGGAATCGGTGAGTTCTAGAAATATATTATAGAAGGTGGTTGGTAATAAGTTTGGGACGCTTTTGGTAGAGGTAACAATAGGGTTTTGGTGGCTGAAGAGGTGTTAGTGGGGTATTATGTGGAAGAATTGGTGTACATAGAAGTGGAGGACTTTTGATAAATGTTTAAAGAAGCATGAGGGAAGAAGGGAAAAATTAAAAAAAAGGTGACAATGAGTTGGCATTAAATAAGGATCGATTTTGAAAAGGCTTGTGACCATGTGGATTGGAATTTCCTTGACAAAATATTGACAATAAAGATTCTAGTTATAAATGGAGATCTTGGATTTGGAGTTAGTGTCAAGTCGATAAAATTTTCCGTTCTCATTAATGGAAATCCTAAGGGTAAGATCACAACTTCGTGAAGCCTTAGGCAAAGGGACCCTTTATCTCCTTTCTTATTCTTGCTTGTTGTAGATGTTTTGAGCAGAATGGTCTCCTAAAGTATTGAAGGTAAGAATTGTGGTAAATTGTCATAAGTTTTGATTTGATTTGGTTATTTGGATTAGATTTGATTTGGTTATTTGGATTTGATTTGATTTGGGTATTTGAATTAGATTTAGTCATACAGATTTAGTCACATCGCAATTTGATATCGGGATTTGGGAGTTTTGTGTCACATTGTATTTCTTGAGTGACATATTGGAGAGAGTCTTTGTAGTGTGATAGTGAGGTATTCACTTGGAACGCTTTGTTTTATTAGTGATTGGTTGCTACTCGTGGATGTAGGGGATCTTCTTCTCTTCGAACCATGTAAATATCTTGGTGTCTCTTTGTGTAATTTTGTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAGCAATTGGTATCAGAGCCTAATTGTGGTATTTGGGGTATTGTGAAAGTTTTGGCCTCATCGACCACTAGACGTGCTCACAATCGTGCTTATTTTCTTGAAAATCAATTTTCAAGAATTGTGTTTTTAGTTACATCCAGATTACTTATTGCAAATGGCATAATCATCTGGAATTAAATCACGGCGTGGATCGAGATTTTTGAGCTCTAATTTNTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAGCAATTGGTATCAGAGCCTAATTGTGGTATTTGGGGTATTGTGAAAGTTTTGGCCTCATCGACCACTAGACGTGCTCACAATCGTGCTTATTTTCTTGAAAATCAATTTTCAAGAATTGTGTTTTTAGTTACATCCAGATTACTTATTGCAAATGGCATAATCATCTGGAATTAAATCACGGCGTGGATCGAGATTTTTGAGCTCTAATTTCGAAGTAGAGAAATTTGATGGAACCAATAATTTTGGTGTTTGGCGAGGCGAAGTTAGCGATTTGCTGATCATGCAAGATCTTGATGCTTCTCTCCAAGAGGAGATGCCTGAAGACATGACAGACGCCGAATGGATGAAATTAAATCGACAAGCTTGCGGAATTATTCGATCCTGTCTTGGCAAGGTTTAGAAATATCCATTTATGAAGGTGACCATGGCGAAAGAACTATAGGACAAGCTTGAGGCGAAATATATGCAAAATAGTGGAAAATAAACTCTATTTGAAGAAGAAACTCTTCCGTTTTGACTACAAGAAATGTATCTCAATTAAATTCTTTGACGGAGACAAGGCAGCGTTCTTATTAAATTCTTTGACGGAGTCCGACGAGTTTTTAATAACCACTCTACTACATGGAATCACTGATATTGATTTTGAAGATGTTTCAAATGTCTTGATGAATAATGAGGTGGGAAAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTTGTGGAAGGACTTCTACTTTGAAAAAGAGCGAACGTGGAAAGTCCCGATCAAAGTCGAGAGGTAGATATGATAATTGGAGAAAACTTGATAAAAATGAGTGTGCATATTGTCGATAGAAAGGCCATTGGAAGAAAGATTGCCCGATCTTAAAAGAGAAGAGGTCGAAGTCGACTCTCGCCTATGCACGAGGAAGAGTTGGAGTTAGTGAATTTATGGGCTTGTAACATAGGGTTATTGGCAAAGTGGTTACGGCGTTTCCCCTTTTGAGTCTACTTCTCGTTGGTATAGGATTATCGTGAGCTAGTATTACTCTCATTCCTTCTAATGGTCGTCGAGTGGGGTTAAAGGCACATTCAAAAACCTTTGGAAAGATATTTTGAATGAGCCTTTTTCTTTTTCTGATTTAATTAAGTGTGTGGTGGTGATAGGAATGATACATTTTTTAGGGACAATAGGTGGATGATGGATCGACCCCTCTACAGCATGTTTCCTGGTCTTATCATTTATTCGCTATGAAAGACTGGTGTTTTTCTGATGTTCTAATTCATTTTGTCATTTGTTTAGGTTCCGTCATTTGTTTGACAGGAAAACAATGGAGGTAATGGCTCTCCTTTCTTTAACCGGAGAGTTTGAGCTTAGATCGGAAGAGGATTTCATTGGTGGAGCCCTAATACTTTTGAATGCTTTTCTCATTATTATTGTGCCCTTTCCCATCTAGGGAGTCTATTTCTTTGATTCTTTTGAAGATGAAAATTCTAGAAAAGGTGAACTTATTTATTTATTTATTTTTCGGCTGGTTATCCATGGAAGAATTAATACTTTGGATAGGCTTTTGAGGAAGTTGTCATTTTTGGGAAGGCCTATATGTTGTATCCTTTTTCAGAGGGCGGTGGAAGGTTAGGATACTTTATTTTCAAGTTGTGATTATGCTCAAATGGTGTGGAATTACTTCATTGGTGTGTTTGGCATATAGCTTGCTTGACACAAAGATTTTAGTGAAATGATCACTGTTCCTCCCCCATCCGCCATTTTGGGAGAAAGGATGTTCTTTATGCCAAATCGAGGTGTGTACTTTATCGTGGGGCATTTGGAGAGAGAGAAATAATAGAAAGTTGGTCTCTTATAAAAAACAAACAAACAAAAATTTCCCCGTATGAAAGTTTTTAGAGCTTTTGTTATCATTTTAATTGGATAGAGGGATATTTGTATGCTTCTAAAGGAGATTTTATTCCTTTTAACCTTTCATTATTGTGGGGAAGTTTAAAAAACGTAACCTTACCTCTAGGCTTTAGGCTTGGTATTGAAAATTATCCAAAAATTTGAAAATTGAGACACACCCCCTCGTGCATCTTCTCTACCTCTTACCAAAGCCACTACCTGGAAAAATAGCATCAAGGAATTCTAAGCTTGTTGAAGTTGTCTTTACTTTAGAAAGTTTAGTAACTTTCCCGGTGAAGGTAATCTAGCTTGTTGTATAAACTTGTTTAGGTTCAAATAAACTGAACTCTAATGATATGGGGGACATATAAACTCTGTTTTGAGTAGAATATTCGGTATTTTGCACACACTTGGCATGTGTCAAACTGTTGGGTATCTTCCTTATTTTCCTTTGATTGATAATAGAAACCAACGATGAGTTCACAAAATAACAAGGTCATACTTTACTGGATTGAAGCCCCTTTTGTAGATTGTTTCTTGTTTCCCATTTCTTTGTGGACTATGCCTTTCTACTCTCTCAATAAATTTTTTTGTTTATCATCATAAACAGACAAAATAACAAGGTCATACTTTACTGGATTGAAGCCCCTTTTGTAGATTGTTTCTTGTTTCCCATTTCTTTGTGGACTATGCCCTTCTACTCTCTCAATAAATTTTTTTGTTTATCATCATAAACAGAAAAAATATATATATAGCATCAAGATACAAGGTAGAACTCCCAGCCAATTTGAGAGTTTCGGTAAACTCTCGCAAGAGACGACTATTTCTCCTCACACTAATCTCCTAACCAATTTCCTACACTACTCACCCCTTCTCACCAACTGTCGCTTTTTGTCCTACTTACTAGATGTATGAACTTTCGGAGGGCTGACAATAGTATTTCAAAAAGCTCAAAAGGTGCAAACTTATTTTTTATTTTTAAATTTGGACATGCTGAGATGTAGCAGAAGCATACTTGGCAGAGAACTCGTTTGTTATTGGAAAATAAAGAACAAATATGGTGTCTTCTGCCGTTCTATGATTACTATTACCCAAATCTCTCAGACAAGGATATAGAGTAGTAGAGAAAATTTAGAGGCAGACTTGGCATAAGAGAAAGAGAACCATATGAACGAGGGAGAAGGAGAAAGATAGTTGGGCCAAAAGTGAAAGTGGGAATATATCTAGCGATGAGTGATAGGCTGGTTTCAGTGCAGGAGAAATCAATTGTGGAGGATAGAAGTTTGATTTTTTTGGTTGAAAAGTTACTGCAAAAGAGACTTCTGATTTGGATGGGTTGGAATCCGACTTTCTTGTTTTAAAAGCTGTTGAAACCGAGGCTTCAAATTTTGATTTGCAGTGGTTCAATCTTCATAACCCTTTTTTACACTCCAAAAGGGATTTATTACTATTACCATTTTATTTCTGGGCTGTCATGGAAACGTTTTAAATATATTGGTACTTGTTCAAAAAAAGGTCTGCTTATGTATAGGTAGGACTACACAACTTCTTGTCCCTCCCTTGATGCATTTCAACAATCTCAGTTCTAATGCTTGCACAAGATTGCAACACTATGCATGCTATATTGTGTAGTCATATATATAAATATATGAAGTTGCATATGTAGCCAAGCTTAACATAAAATAAGATAGTAAAACACTGAAAATTTTGGATCTCACGTTATCAGCTGAAGTAATTTGAACAGAAGAGCGTTTCTCCAAATGAAAAACTATGCAATAAAACCTCTGATAGGCCTCTATTTTAAATATCTCTCCGAGTAAGTACAAATGGGGGAATTAATCCCTGATGGCATTTAGAGTTTTGGTAGGGTACTTGTTTATTTGTTCAATCCCTCTGTTTGAACTTGTGTGGCTAAGGACTTTAGTCTTTATTCATTATCTCTCGTTCTTTTAAATTTGAGCTTTTCTTCGGTAGCTGTGTAGTTAGTCTATTGTTCTTGGGCCCTTTTGTTTTAGTTTTTTTTTAACTTACCATAGACGATATAATTATACGAGTGGGTTGCATATAATACTGCAAATGTAGAAGTTGAGTATGCCGTTTGATTTTCTTTTTGTTTCCAGGCATCTCGCTATCCTTGGATCAGGTATGCACTTATTTTTATTTTCTTAAGCTTCAATATCTTTTTGTGTTTCTTTGTTCTTTTAGAGAAGCTGATCATCTTTCTACTTTTTACAATGGTTGTCTTTCTGCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAGTGAGGCATCTTTGGTTGATATTAGTAGCAAATGTATTGCTCCGTAGGGTTGTTTTGCTTTATGACAACGAAAGTATGCCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGGTATATTAGCAGTTGTATTTGTATAAACTGGATCACTGGATTGACATTTTGAATTATAGTATGGCATAACTGACTATTACAATTCTCAATGAGTATCAAATTGATATTTTGAGCATCAAATAGAGAATCTTCTCCTGGTTTAGATATTGCACCATGTTCCAAGCAAAAGAAGTTTCTAAATGGCCAAAACTCGACTTCGTACCGATCCCTCTCCTAGGTTACATATCATCTTGGAGTAAGCCAATCCGACCTGGAGGAGCTCATCTCTCTCTTTATGACAATTGGGTAGCAAGCTTCCCAAACTATATGCCAAGATCGAAGAAGAACATGGAGCCTTGACATGATGTCATGGTTCGAGATGTGGCAGAATTTGTTGCACCATCGTCCTCGAAGAATGGCTCTCGAAAGCAACTCGTTTCCTATGGACAGGTTGCCAAAGGTGATGCATAGAATTGGCTGATGAGATGTGATGAGAGGGTTTGAAATGGAAGAATGAGAGCAGCCAAAGAGTACATAGAGTGGCTGCTTCTCCTCCAAGTGAATGAGCTGTTGTAATTCTCCATTACTCTTGTCATCTGCAATATTTGAGATCATGTTTTGTCATACCAATAATTCTTTTTACAGCATGTTTGATAGTGCTTTTGTTTTTGTTTTCTAATAGTCTTCAACGTTATTTGCCCGACTTTGTTATGTGTAATTACATACAATGAAATTAGACCAACAAGAATATAGTTAAAAATGTAACATCAT

mRNA sequence

AAAATTGTTTTTTTAAAAGTTTTAATTGTTTTTTTTTAAGGAAATGGTTAGAAATTTGAAAATGTTTTTTATTACACATGAAATTGTATTGCACTTGCTGTATTGAAGAGCACACATACTCGGGAAGGAGAAGAAGACCACGAGAAAGGAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAGTGAGGCATCTTTGGTTGATATTAGTAGCAAATGTATTGCTCCGTAGGGTTGTTTTGCTTTATGACAACGAAAGTATGCCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGGTATATTAGCAGTTGTATTTGTATAAACTGGATCACTGGATTGACATTTTGAATTATAGTATGGCATAACTGACTATTACAATTCTCAATGAGTATCAAATTGATATTTTGAGCATCAAATAGAGAATCTTCTCCTGGTTTAGATATTGCACCATGTTCCAAGCAAAAGAAGTTTCTAAATGGCCAAAACTCGACTTCGTACCGATCCCTCTCCTAGGTTACATATCATCTTGGAGTAAGCCAATCCGACCTGGAGGAGCTCATCTCTCTCTTTATGACAATTGGGTAGCAAGCTTCCCAAACTATATGCCAAGATCGAAGAAGAACATGGAGCCTTGACATGATGTCATGGTTCGAGATGTGGCAGAATTTGTTGCACCATCGTCCTCGAAGAATGGCTCTCGAAAGCAACTCGTTTCCTATGGACAGGTTGCCAAAGGTGATGCATAGAATTGGCTGATGAGATGTGATGAGAGGGTTTGAAATGGAAGAATGAGAGCAGCCAAAGAGTACATAGAGTGGCTGCTTCTCCTCCAAGTGAATGAGCTGTTGTAATTCTCCATTACTCTTGTCATCTGCAATATTTGAGATCATGTTTTGTCATACCAATAATTCTTTTTACAGCATGTTTGATAGTGCTTTTGTTTTTGTTTTCTAATAGTCTTCAACGTTATTTGCCCGACTTTGTTATGTGTAATTACATACAATGAAATTAGACCAACAAGAATATAGTTAAAAATGTAACATCAT

Coding sequence (CDS)

ATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAG

Protein sequence

MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD
BLAST of Cp4.1LG01g17340 vs. Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.2e-31
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1

Query: 1   MSARGKRKEDE----DHVSEGDAPPKKTFRK--DSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRK+++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH ++I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

BLAST of Cp4.1LG01g17340 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-12
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 1

Query: 8   KEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           KE+ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           K++P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

BLAST of Cp4.1LG01g17340 vs. Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 1

Query: 7   RKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-K 66
           +K+     S+G A  K++  +D +      + +I K R V VR+++GK+++DIRE+++ +
Sbjct: 38  KKQKTGESSKGAASSKQSSNRDEN------MFQIGKMRYVSVRDFKGKVLIDIREYWMDQ 97

Query: 67  DGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           +G+  PG+KGISL+ +QWN L+  + +ID AV +
Sbjct: 98  EGEMKPGRKGISLNPEQWNQLKEQISDIDDAVRK 125

BLAST of Cp4.1LG01g17340 vs. Swiss-Prot
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 27  KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVDEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

BLAST of Cp4.1LG01g17340 vs. Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 27  KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVDEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

BLAST of Cp4.1LG01g17340 vs. TrEMBL
Match: A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK DED VSEGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVL NHV+EIDKAVNENS GD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

BLAST of Cp4.1LG01g17340 vs. TrEMBL
Match: M5WID1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-35
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGD----APPKKTFRKDS--DETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRK++EDH S+GD    APPKKT ++DS  D +DEI+ CEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEEDHASDGDSEGHAPPKKTCKRDSADDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I+VDIREFYVKDGKQMPGKKGISL+ DQW+VL NHV+EIDKAVN  S
Sbjct: 61  IMVDIREFYVKDGKQMPGKKGISLTKDQWDVLHNHVEEIDKAVNGTS 107

BLAST of Cp4.1LG01g17340 vs. TrEMBL
Match: I3SIW1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-35
Identity = 77/105 (73.33%), Postives = 90/105 (85.71%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGD----APPKKTFRKDSDET-DEIVVCEISKNRRVMVRNWQGKI 60
           MS +GK+++D D  S+ D    APPKK+ +KDSDE  D IVVCEISKNRRV VRNWQG+I
Sbjct: 1   MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  VVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNEN 101
           VVDI EFYVKDGKQMPGKKGISL++DQWNVLRNH++EIDKAVNE+
Sbjct: 61  VVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNES 105

BLAST of Cp4.1LG01g17340 vs. TrEMBL
Match: V7AVU6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.3e-35
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 1

Query: 1   MSARGKRKEDE---DHVSEGDAPPKKTFRKDSD-ETDEIVVCEISKNRRVMVRNWQGKIV 60
           MS + KR++++   D  SEG APPKKT ++DSD E+D IVVCEISKNRRV VRNWQG+IV
Sbjct: 1   MSGKAKRRDEDGASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRIV 60

Query: 61  VDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           VDIREFY+KDGK+MPGKKGISL++DQWNVLR HV+EIDKAV+ENS
Sbjct: 61  VDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105

BLAST of Cp4.1LG01g17340 vs. TrEMBL
Match: A0A0B2PPL3_GLYSO (RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_011908 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-34
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 1

Query: 1   MSARGKRKEDE---DHVSEGDAPPKKTFRKDSDET-DEIVVCEISKNRRVMVRNWQGKIV 60
           MS + KR++D+   D  SEG APPKK+ +KDSD+  D I VCEISKNRRV VRNW+G I+
Sbjct: 1   MSGKAKRRDDDGASDADSEGHAPPKKSLKKDSDDDPDSITVCEISKNRRVAVRNWKGSIM 60

Query: 61  VDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           VDIREFYVKDGKQ+PG+KGISL++DQWNVLRNHV+EIDKA+NENS
Sbjct: 61  VDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

BLAST of Cp4.1LG01g17340 vs. TAIR10
Match: AT5G09250.1 (AT5G09250.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 134.0 bits (336), Expect = 5.2e-32
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1

Query: 1   MSARGKRKEDE----DHVSEGDAPPKKTFRK--DSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRK+++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH ++I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

BLAST of Cp4.1LG01g17340 vs. TAIR10
Match: AT5G09240.2 (AT5G09240.2 ssDNA-binding transcriptional regulator)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1

Query: 1   MSARGKRKE------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS  GKRK+      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKQMP--GKKGISLSLD----------------------------QWN 102
           I + IR+F+VKDG  +P   K+GISLSL+                            QWN
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWN 120

BLAST of Cp4.1LG01g17340 vs. TAIR10
Match: AT4G10920.1 (AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-13
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 1

Query: 8   KEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           KE+ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           K++P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: gi|449457317|ref|XP_004146395.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-46
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK DED VSEGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVL NHV+EIDKAVNENS GD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: gi|659083009|ref|XP_008442140.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 5.0e-45
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSA GKRK+DED VSEGDAPP KTFRKD D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1   MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 105
           EFYVKDGKQMPGKKGISLSLDQWNVL NHV+EIDKAVNENS GD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: gi|694406930|ref|XP_009378234.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bretschneideri])

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGDA----PPKKTFRKD--SDETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRK+++DH SEGD+    PPKK  ++D  SD +D+I VCEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEDDHASEGDSEGHEPPKKASKRDTDSDSSDDITVCEISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           +VVDIREFYVKDGKQMPGKKGISL++DQWNVLRNHV+EIDKAVNE S
Sbjct: 61  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNETS 107

BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: gi|658047012|ref|XP_008359177.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Malus domestica])

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGD----APPKKTFRKD--SDETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRK+++DH S GD    APPKK  ++D  SD +D+I VCEISKNRRV VRNW GK
Sbjct: 1   MSWRGKRKDEDDHASGGDSEGHAPPKKASKRDTDSDSSDDITVCEISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           +VVDIREFYVKDGKQMPGKKGISL++DQWNVLRNHV+EIDKAVNE S
Sbjct: 61  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNETS 107

BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: gi|694330280|ref|XP_009355849.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bretschneideri])

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-36
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 1

Query: 1   MSARGKRKEDEDHVSEGDA----PPKKTFRKDS--DETDEIVVCEISKNRRVMVRNWQGK 60
           MS RGKRK+++DH S+GD+    PPKK  +K+S  D +D+I VCEISKNRRV VRNW GK
Sbjct: 4   MSGRGKRKDEDDHASDGDSEGHPPPKKASKKNSSDDSSDDITVCEISKNRRVSVRNWNGK 63

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           +VVDIREFYVKDGKQMPGKKGISL++DQWNVLRNHV+EIDKAVNE
Sbjct: 64  VVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHVEEIDKAVNE 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KIWI_ARATH9.2e-3163.55RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KI... [more]
KELP_ARATH5.6e-1239.13RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE... [more]
TCP4_CHICK3.1e-1036.17Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=... [more]
TCP4_MOUSE4.0e-1040.54Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=S... [more]
TCP4_RAT4.0e-1040.54Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus... [more]
Match NameE-valueIdentityDescription
A0A0A0L2F1_CUCSA4.1e-4690.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1[more]
M5WID1_PRUPE1.5e-3573.83Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1[more]
I3SIW1_LOTJA5.6e-3573.33Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
V7AVU6_PHAVU7.3e-3573.33Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G154400g PE=4 SV=1[more]
A0A0B2PPL3_GLYSO2.1e-3471.43RNA polymerase II transcriptional coactivator KIWI OS=Glycine soja GN=glysoja_01... [more]
Match NameE-valueIdentityDescription
AT5G09250.15.2e-3263.55 ssDNA-binding transcriptional regulator[more]
AT5G09240.21.2e-1741.61 ssDNA-binding transcriptional regulator[more]
AT4G10920.13.2e-1339.13 transcriptional coactivator p15 (PC4) family protein (KELP)[more]
Match NameE-valueIdentityDescription
gi|449457317|ref|XP_004146395.1|5.9e-4690.38PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi... [more]
gi|659083009|ref|XP_008442140.1|5.0e-4588.46PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi... [more]
gi|694406930|ref|XP_009378234.1|6.6e-3774.77PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bret... [more]
gi|658047012|ref|XP_008359177.1|1.9e-3674.77PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Malus domest... [more]
gi|694330280|ref|XP_009355849.1|3.3e-3674.29PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Pyrus x bret... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003713transcription coactivator activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009044ssDNA-bd_transcriptional_reg
IPR003173PC4
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17340.1Cp4.1LG01g17340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 38..88
score: 1.1
IPR009044ssDNA-binding transcriptional regulatorGENE3DG3DSA:2.30.31.10coord: 37..98
score: 3.8
IPR009044ssDNA-binding transcriptional regulatorunknownSSF54447ssDNA-binding transcriptional regulator domaincoord: 37..98
score: 1.1
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 6..101
score: 3.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17340CmaCh03G001990Cucurbita maxima (Rimu)cmacpeB666
Cp4.1LG01g17340CmoCh03G001810Cucurbita moschata (Rifu)cmocpeB617
Cp4.1LG01g17340Carg27662Silver-seed gourdcarcpeB0314
The following gene(s) are paralogous to this gene:

None