CmoCh03G001810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G001810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Coactivator-p15 transcription factor) (RNA polymerase II transcriptional coactivator KIWI)
LocationCmo_Chr03 : 2834611 .. 2835215 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTATTACACAGGAAATTGTATAGGTTTAATTTCACGTTCGTACCCGATTTCCGTCGTACTCACTTGAGCACACATACTCGGGAAGAAGAAGACCAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATATGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTCGTCTGCGAGGTCTTTCACTTCACCTTCCTCCTCCTGTTTTTACTGCCTTTTATGTTGGTTTCAATTTTTTTATTGGTTTTTTTTCCTGACCGCAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTATCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAAATGATTTTTCGTTTTGGATTTAGAAGTCGGTTTGCTGTTTTTCTAGGGTCTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGTCTAGGTATTTGTTTTGA

mRNA sequence

TTTTTTTATTACACAGGAAATTGTATAGGTTTAATTTCACGTTCGTACCCGATTTCCGTCGTACTCACTTGAGCACACATACTCGGGAAGAAGAAGACCAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATATGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTCGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGATTTGTCTAGGTATTTGTTTTGA

Coding sequence (CDS)

ATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATATGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTCGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGATTTGTCTAGGTATTTGTTTTGA
Homology
[Close]
BLAST of CmoCh03G001810 vs. Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MSARGKRKDDE----DHVYEGDAPPKKTFRK--DSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD++    D   E  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKDLS 78
          I +DIREFYVKDGK +PGKK +S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]
BLAST of CmoCh03G001810 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 8   KDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKDLS 78
           K++P  K +S
Sbjct: 134 KELPTSKGIS 138

[Close]
BLAST of CmoCh03G001810 vs. TrEMBL
Match: A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-30
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRK DED V EGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKDLS 78
          EFYVKDGKQMPGKK +S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of CmoCh03G001810 vs. TrEMBL
Match: M5WID1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-24
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGD----APPKKTFRKDS--DETDEIVVCEISKNRRVMVRNWQGK 60
          MS RGKRKD+EDH  +GD    APPKKT ++DS  D +DEI+ CEISKNRRV VRNW GK
Sbjct: 1  MSWRGKRKDEEDHASDGDSEGHAPPKKTCKRDSADDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKDLS 78
          I+VDIREFYVKDGKQMPGKK +S
Sbjct: 61 IMVDIREFYVKDGKQMPGKKGIS 83

[Close]
BLAST of CmoCh03G001810 vs. TrEMBL
Match: W9QSL9_9ROSA (RNA polymerase II transcriptional coactivator KIWI OS=Morus notabilis GN=L484_007909 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-23
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYE---GDAPPKKTFRKD--SDETDEIVVCEISKNRRVMVRNWQGKI 60
          MS  GKRKDDE+   +   GDAPPKKT +KD  SD++D++VVCEISKNRRV VRNWQG+I
Sbjct: 1  MSGSGKRKDDEEFASDDGGGDAPPKKTLKKDSSSDDSDDVVVCEISKNRRVSVRNWQGRI 60

Query: 61 VVDIREFYVKDGKQMPGKK 75
          VVDIREFYVKDGKQ+PGKK
Sbjct: 61 VVDIREFYVKDGKQLPGKK 79

[Close]
BLAST of CmoCh03G001810 vs. TrEMBL
Match: A0A061DJ82_THECC (SsDNA-binding transcriptional regulator isoform 2 OS=Theobroma cacao GN=TCM_001543 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGD---APPKKTFRK----DSDETDEIVVCEISKNRRVMVRNWQG 60
          MS RGKRKD EDH  + +   APPKK+F+     +SD+ D IVVCEISKNRRV VRNWQG
Sbjct: 1  MSYRGKRKDGEDHASDENDDHAPPKKSFKTTAAANSDDPDGIVVCEISKNRRVTVRNWQG 60

Query: 61 KIVVDIREFYVKDGKQMPGKKDLSRYLF 82
          KI VDIREFYVKDGKQMPGKK + + L+
Sbjct: 61 KIWVDIREFYVKDGKQMPGKKGIQQILY 88

[Close]
BLAST of CmoCh03G001810 vs. TrEMBL
Match: I3SIW1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGD----APPKKTFRKDSDET-DEIVVCEISKNRRVMVRNWQGKI 60
          MS +GK++DD D   + D    APPKK+ +KDSDE  D IVVCEISKNRRV VRNWQG+I
Sbjct: 1  MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61 VVDIREFYVKDGKQMPGKKDLS 78
          VVDI EFYVKDGKQMPGKK +S
Sbjct: 61 VVDILEFYVKDGKQMPGKKGIS 82

[Close]
BLAST of CmoCh03G001810 vs. TAIR10
Match: AT5G09250.1 (AT5G09250.1 ssDNA-binding transcriptional regulator)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-21
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MSARGKRKDDE----DHVYEGDAPPKKTFRK--DSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD++    D   E  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKDLS 78
          I +DIREFYVKDGK +PGKK +S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]
BLAST of CmoCh03G001810 vs. TAIR10
Match: AT5G09240.2 (AT5G09240.2 ssDNA-binding transcriptional regulator)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 1  MSARGKRKD------DEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKD      D+    E  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP 72
          I + IR+F+VKDG  +P
Sbjct: 61 IWIAIRQFFVKDGITLP 76

[Close]
BLAST of CmoCh03G001810 vs. TAIR10
Match: AT4G10920.1 (AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 8   KDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKDLS 78
           K++P  K +S
Sbjct: 134 KELPTSKGIS 138

[Close]
BLAST of CmoCh03G001810 vs. NCBI nr
Match: gi|449457317|ref|XP_004146395.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-30
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRK DED V EGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKDLS 78
          EFYVKDGKQMPGKK +S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of CmoCh03G001810 vs. NCBI nr
Match: gi|778694918|ref|XP_011653896.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X2 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRK DED V EGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKD 76
          EFYVKDGKQMPGKK+
Sbjct: 61 EFYVKDGKQMPGKKE 75

[Close]
BLAST of CmoCh03G001810 vs. NCBI nr
Match: gi|659083009|ref|XP_008442140.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRKDDED V EGDAPP KTFRKD D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1  MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKDLS 78
          EFYVKDGKQMPGKK +S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of CmoCh03G001810 vs. NCBI nr
Match: gi|659083011|ref|XP_008442141.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X2 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 8.8e-29
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRKDDED V EGDAPP KTFRKD D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1  MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKK 75
          EFYVKDGKQMPGKK
Sbjct: 61 EFYVKDGKQMPGKK 74

[Close]
BLAST of CmoCh03G001810 vs. NCBI nr
Match: gi|645242422|ref|XP_008227543.1| (PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Prunus mume])

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-24
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 

Query: 1  MSARGKRKDDEDHVYEGD----APPKKTFRKD--SDETDEIVVCEISKNRRVMVRNWQGK 60
          MS RGKRKD+EDHV +GD    APPKKT ++D   D +DEI+ CEISKNRRV VRNW GK
Sbjct: 1  MSWRGKRKDEEDHVSDGDSEGHAPPKKTCKRDPTDDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKDLS 78
          I+VDIREFYVKDGKQMPGKK +S
Sbjct: 61 IMVDIREFYVKDGKQMPGKKGIS 83

The following BLAST results are available for this feature:
BLAST of CmoCh03G001810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KIWI_ARATH4.4e-2062.65RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KI... [more]
KELP_ARATH2.7e-0638.57RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE... [more]
BLAST of CmoCh03G001810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F1_CUCSA2.5e-3087.01Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496770 PE=4 SV=1[more]
M5WID1_PRUPE3.5e-2472.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013716mg PE=4 SV=1[more]
W9QSL9_9ROSA2.9e-2373.42RNA polymerase II transcriptional coactivator KIWI OS=Morus notabilis GN=L484_00... [more]
A0A061DJ82_THECC4.2e-2267.05SsDNA-binding transcriptional regulator isoform 2 OS=Theobroma cacao GN=TCM_0015... [more]
I3SIW1_LOTJA9.4e-2269.51Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmoCh03G001810 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09250.12.5e-2162.65 ssDNA-binding transcriptional regulator[more]
AT5G09240.21.8e-1148.05 ssDNA-binding transcriptional regulator[more]
AT4G10920.11.5e-0738.57 transcriptional coactivator p15 (PC4) family protein (KELP)[more]
BLAST of CmoCh03G001810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457317|ref|XP_004146395.1|3.6e-3087.01PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi... [more]
gi|778694918|ref|XP_011653896.1|1.0e-2988.00PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X2 [Cucumi... [more]
gi|659083009|ref|XP_008442140.1|1.4e-2985.71PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi... [more]
gi|659083011|ref|XP_008442141.1|8.8e-2987.84PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X2 [Cucumi... [more]
gi|645242422|ref|XP_008227543.1|5.0e-2472.29PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003173PC4
IPR009044ssDNA-bd_transcriptional_reg
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003713transcription coactivator activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001810.1CmoCh03G001810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 38..74
score: 4.4
IPR009044ssDNA-binding transcriptional regulatorGENE3DG3DSA:2.30.31.10coord: 37..74
score: 9.3
IPR009044ssDNA-binding transcriptional regulatorunknownSSF54447ssDNA-binding transcriptional regulator domaincoord: 37..77
score: 2.82
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 6..74
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G001810CmaCh03G001990Cucurbita maxima (Rimu)cmacmoB655
CmoCh03G001810Cp4.1LG01g17340Cucurbita pepo (Zucchini)cmocpeB617
CmoCh03G001810Carg27662Silver-seed gourdcarcmoB0310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G001810Cucurbita moschata (Rifu)cmocmoB463
CmoCh03G001810Cucumber (Gy14) v1cgycmoB0937
CmoCh03G001810Cucurbita maxima (Rimu)cmacmoB865
CmoCh03G001810Melon (DHL92) v3.5.1cmomeB608
CmoCh03G001810Watermelon (Charleston Gray)cmowcgB593
CmoCh03G001810Watermelon (97103) v1cmowmB630
CmoCh03G001810Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G001810Cucurbita pepo (Zucchini)cmocpeB622
CmoCh03G001810Bottle gourd (USVL1VR-Ls)cmolsiB584
CmoCh03G001810Bottle gourd (USVL1VR-Ls)cmolsiB600
CmoCh03G001810Melon (DHL92) v3.6.1cmomedB680
CmoCh03G001810Melon (DHL92) v3.6.1cmomedB697
CmoCh03G001810Silver-seed gourdcarcmoB0644
CmoCh03G001810Watermelon (97103) v2cmowmbB647
CmoCh03G001810Watermelon (97103) v2cmowmbB666
CmoCh03G001810Wax gourdcmowgoB0795