Carg27662 (gene) Silver-seed gourd

Overview
NameCarg27662
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA polymerase II transcriptional coactivator
LocationCucurbita_argyrosperma_scaffold_206 : 163472 .. 164790 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGACTGTTTATTTATCACACAGGAAATTGTATAGGTTTAATTTGACGTTCGTACCCGATTTCCGTCCTACTCACTTGAGCACACATACTCGGGAAGAAGACCAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGGTCTTTCACTTCACCTTCCTCCTGTTTTTAGTGCCTTTTATGTTGGTTTCAATTCTTCATTGGGGTTTTTTTTTTTTTGACCGCAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTACCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAATTGATTTTTCGTTTTGGATTTAGAAGTCGGTTTGCTGTTTTTCTAGGGTTTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGTCTTGGTATTTGTTTTGAATTGTCTAATGATGGTCGAGGGAGAATTTGGTGGTGAAATGGAATTCTAATGTGGGGAACTTTTCTTGCTTCATACTTGTGTTTCACTGTCTACACGATCACTTGGGCTGAACCGATAGTTTTTTTCAGCTCCATTTTAGTTGTTGGAGATTCTTTTTGCATCAGATATTGAGATTGTAAAGCGTTACTCCATATTTTTTCTCTCTAGAATTTGATATAGGGGTTTGAGTAATGATGTTTGGAAACTGCATTTATGGCTTTATCATAGATGTTTGTTCAAAGTGAAGAGGAAATATTTTTGGATGATCATATATATTCTTATGAACTTCATTTGGTCTACAGGCAATTTTATAAAATTTACCTTTCTCTGGACTTTTGCTATGACATAATTTAGTGAGGTTCCAATTTTTATGATCCACCAAGAATTTTGATTTGGGGATAGTTTTCTTATCTGGTTCATGTAAAATAGTTGTTGGGAATATTTAAGGAAGAACGTATGTATAGGGATGAAAGAATAATTTTGAAGGGCTGGGTAGAGGGTTTGAAGAAAAAAAGATGGTGAAGAAGAGACTTGAGTATGCCCAATTTGGCTGGAAACATACCTTTCTAGTGACTAGACGTCAATTTCACACTAATTGATACAGTATTACGGAAGCCTTAAAGGAAGGTTATACATTAAGAATCACATGCTCAATCCTTTGCTATGA

mRNA sequence

AAAATGACTGTTTATTTATCACACAGGAAATTGTATAGGTTTAATTTGACGTTCGTACCCGATTTCCGTCCTACTCACTTGAGCACACATACTCGGGAAGAAGACCAAAGGAGGAAGAAATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTACCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAATTGATTTTTCGTTTTGGATTTAGAAGTCGGTTTGCTGTTTTTCTAGGGTTTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGTCTTGGTATTTGTTTTGAATTGTCTAATGATGGTCGAGGGAGAATTTGGTGGTGAAATGGAATTCTAATGTGGGGAACTTTTCTTGCTTCATACTTGTGTTTCACTGTCTACACGATCACTTGGGCTGAACCGATAGTTTTTTTCAGCTCCATTTTAGTTGTTGGAGATTCTTTTTGCATCAGATATTGAGATTGTAAAGCGTTACTCCATATTTTTTCTCTCTAGAATTTGATATAGGGGTTTGAGTAATGATGTTTGGAAACTGCATTTATGGCTTTATCATAGATGTTTGTTCAAAGTGAAGAGGAAATATTTTTGGATGATCATATATATTCTTATGAACTTCATTTGGTCTACAGGCAATTTTATAAAATTTACCTTTCTCTGGACTTTTGCTATGACATAATTTAGTGAGGTTCCAATTTTTATGATCCACCAAGAATTTTGATTTGGGGATAGTTTTCTTATCTGGTTCATGTAAAATAGTTGTTGGGAATATTTAAGGAAGAACGTATGTATAGGGATGAAAGAATAATTTTGAAGGGCTGGGTAGAGGGTTTGAAGAAAAAAAGATGGTGAAGAAGAGACTTGAGTATGCCCAATTTGGCTGGAAACATACCTTTCTAGTGACTAGACGTCAATTTCACACTAATTGATACAGTATTACGGAAGCCTTAAAGGAAGGTTATACATTAAGAATCACATGCTCAATCCTTTGCTATGA

Coding sequence (CDS)

ATGTCTGCAAGAGGAAAGCGAAAAGACGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTCTCTCCGTACCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGA

Protein sequence

MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSSHHRLLFSLRTSPVFRFSCSG
Homology
[Close]
BLAST of Carg27662 vs. NCBI nr
Match: XP_023543027.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRK+DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 78
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of Carg27662 vs. NCBI nr
Match: XP_022932999.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 9.4e-34
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 78
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of Carg27662 vs. NCBI nr
Match: XP_023543026.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 9.4e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRK+DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKG 76
          EFYVKDGKQMPGKKG
Sbjct: 61 EFYVKDGKQMPGKKG 75

[Close]
BLAST of Carg27662 vs. NCBI nr
Match: XP_022933001.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGS 77
          EFYVKDGKQMPGKKG+
Sbjct: 61 EFYVKDGKQMPGKKGA 76

[Close]
BLAST of Carg27662 vs. NCBI nr
Match: XP_022977898.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKR+DDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNR+V+VRNWQGKIVVDIR
Sbjct: 1  MSARGKRRDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRKVIVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 78
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of Carg27662 vs. TAIR10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 100.1 bits (248), Expect = 7.7e-22
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 1  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGSS 78
          I +DIREFYVKDGK +PGKKG S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]
BLAST of Carg27662 vs. TAIR10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-12
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 1  MSARGKRKD------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKD      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP--GKKGSS 78
          I + IR+F+VKDG  +P   K+G S
Sbjct: 61 IWIAIRQFFVKDGITLPCNSKQGIS 84

[Close]
BLAST of Carg27662 vs. TAIR10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 8   KDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGSS 78
           K++P  KG S
Sbjct: 134 KELPTSKGIS 138

[Close]
BLAST of Carg27662 vs. Swiss-Prot
Match: sp|O65154|KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 1  MSARGKRKDDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGSS 78
          I +DIREFYVKDGK +PGKKG S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

[Close]
BLAST of Carg27662 vs. Swiss-Prot
Match: sp|O65155|KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 8   KDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           K++ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGSS 78
           K++P  KG S
Sbjct: 134 KELPTSKGIS 138

[Close]
BLAST of Carg27662 vs. TrEMBL
Match: tr|A0A0A0L2F1|A0A0A0L2F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRK DED VSEGDAPP KTF+KDSD+TDEIVVCE+SKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSASGKRKGDEDDVSEGDAPPSKTFKKDSDDTDEIVVCELSKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 78
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of Carg27662 vs. TrEMBL
Match: tr|A0A1S3B4K6|A0A1S3B4K6_CUCME (RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486087 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.5e-30
Identity = 68/77 (88.31%), Postives = 70/77 (90.91%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRKDDED VSEGDAPP KTFRKD D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1  MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 78
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

[Close]
BLAST of Carg27662 vs. TrEMBL
Match: tr|A0A1S3B509|A0A1S3B509_CUCME (RNA polymerase II transcriptional coactivator KIWI isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486087 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.3e-30
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSA GKRKDDED VSEGDAPP KTFRKD D+ DEIVVCE+SKNRRVMVR WQGKIVVDIR
Sbjct: 1  MSASGKRKDDEDRVSEGDAPPSKTFRKDPDDADEIVVCELSKNRRVMVRKWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKG 76
          EFYVKDGKQMPGKKG
Sbjct: 61 EFYVKDGKQMPGKKG 75

[Close]
BLAST of Carg27662 vs. TrEMBL
Match: tr|M5WID1|M5WID1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G275800 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0 

Query: 1  MSARGKRKDDEDHVSEGD----APPKKTFRKDS--DETDEIVVCEISKNRRVMVRNWQGK 60
          MS RGKRKD+EDH S+GD    APPKKT ++DS  D +DEI+ CEISKNRRV VRNW GK
Sbjct: 1  MSWRGKRKDEEDHASDGDSEGHAPPKKTCKRDSADDNSDEIIACEISKNRRVTVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGSS 78
          I+VDIREFYVKDGKQMPGKKG S
Sbjct: 61 IMVDIREFYVKDGKQMPGKKGIS 83

[Close]
BLAST of Carg27662 vs. TrEMBL
Match: tr|A0A2P6RST8|A0A2P6RST8_ROSCH (Putative transcription factor ssDNA-binding-TF family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0122541 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 0 

Query: 2  SARGKRKDDEDHVSEGD----APPKKTFRKDSDE--TDEIVVCEISKNRRVMVRNWQGKI 61
          S RGKRKD+EDH S+GD    APPKKT ++DSD+   ++IVVCEISKNRRV VRNW GK+
Sbjct: 3  SWRGKRKDEEDHASDGDSEGHAPPKKTAKRDSDDDSAEDIVVCEISKNRRVTVRNWNGKV 62

Query: 62 VVDIREFYVKDGKQMPGKKGSS 78
          +VDIREFYVKDGKQ+PGKKG S
Sbjct: 63 IVDIREFYVKDGKQLPGKKGIS 84

The following BLAST results are available for this feature:
BLAST of Carg27662 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543027.15.5e-3497.40RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pe... [more]
XP_022932999.19.4e-3497.40RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita mo... [more]
XP_023543026.19.4e-3498.67RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita pe... [more]
XP_022933001.11.2e-3397.37RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita mo... [more]
XP_022977898.12.7e-3394.81RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita ma... [more]
BLAST of Carg27662 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09250.17.7e-2265.06ssDNA-binding transcriptional regulator[more]
AT5G09240.27.2e-1248.24ssDNA-binding transcriptional regulator[more]
AT4G10920.11.4e-0740.00transcriptional coactivator p15 (PC4) family protein (KELP)[more]
BLAST of Carg27662 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O65154|KIWI_ARATH1.4e-2065.06RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37... [more]
sp|O65155|KELP_ARATH2.6e-0640.00RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37... [more]
BLAST of Carg27662 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2F1|A0A0A0L2F1_CUCSA1.4e-3089.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=4 SV=1[more]
tr|A0A1S3B4K6|A0A1S3B4K6_CUCME5.5e-3088.31RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1S3B509|A0A1S3B509_CUCME9.3e-3089.33RNA polymerase II transcriptional coactivator KIWI isoform X2 OS=Cucumis melo OX... [more]
tr|M5WID1|M5WID1_PRUPE2.0e-2474.70Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G275800 PE=4 SV=1[more]
tr|A0A2P6RST8|A0A2P6RST8_ROSCH2.2e-2371.95Putative transcription factor ssDNA-binding-TF family OS=Rosa chinensis OX=74649... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009044ssDNA-bd_transcriptional_reg
IPR003173PC4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27662-RACarg27662-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 38..75
e-value: 5.2E-16
score: 57.9
IPR009044ssDNA-binding transcriptional regulatorGENE3DG3DSA:2.30.31.10coord: 26..85
e-value: 1.6E-16
score: 61.5
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILYSSF54447ssDNA-binding transcriptional regulator domaincoord: 37..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 12..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27662CmoCh03G001810Cucurbita moschata (Rifu)carcmoB0310
Carg27662Cp4.1LG01g17340Cucurbita pepo (Zucchini)carcpeB0314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None