Cp4.1LG01g17120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 11416264 .. 11416500 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

mRNA sequence

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Coding sequence (CDS)

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Protein sequence

MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSRRSQRLIRHCRLL
Homology
[Close]
BLAST of Cp4.1LG01g17120 vs. TrEMBL
Match: A0A0A0KP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-26
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of Cp4.1LG01g17120 vs. TrEMBL
Match: A0A151SBB2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]
BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: gi|700196233|gb|KGN51410.1| (hypothetical protein Csa_5G528950 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-26
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: gi|1012340892|gb|KYP52102.1| (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP64_CUCSA2.7e-2686.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1[more]
A0A151SBB2_CAJCA1.9e-1169.09Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1[more]
BLAST of Cp4.1LG01g17120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196233|gb|KGN51410.1|3.9e-2686.49hypothetical protein Csa_5G528950 [Cucumis sativus][more]
gi|1012340892|gb|KYP52102.1|2.7e-1169.09hypothetical protein KK1_026012, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17120.1Cp4.1LG01g17120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17120CmaCh04G018940Cucurbita maxima (Rimu)cmacpeB725
Cp4.1LG01g17120CmoCh04G019960Cucurbita moschata (Rifu)cmocpeB677
Cp4.1LG01g17120Cla001878Watermelon (97103) v1cpewmB469
Cp4.1LG01g17120Csa5G528950Cucumber (Chinese Long) v2cpecuB453
Cp4.1LG01g17120ClCG11G000080Watermelon (Charleston Gray)cpewcgB362
Cp4.1LG01g17120MELO3C034522.2Melon (DHL92) v3.6.1cpemedB429
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17120Wild cucumber (PI 183967)cpecpiB453
Cp4.1LG01g17120Wild cucumber (PI 183967)cpecpiB458
Cp4.1LG01g17120Cucumber (Chinese Long) v2cpecuB448
Cp4.1LG01g17120Cucumber (Chinese Long) v2cpecuB449
Cp4.1LG01g17120Bottle gourd (USVL1VR-Ls)cpelsiB321
Cp4.1LG01g17120Watermelon (Charleston Gray)cpewcgB365
Cp4.1LG01g17120Watermelon (97103) v1cpewmB455
Cp4.1LG01g17120Melon (DHL92) v3.5.1cpemeB371
Cp4.1LG01g17120Cucumber (Gy14) v2cgybcpeB663
Cp4.1LG01g17120Cucumber (Gy14) v2cgybcpeB664
Cp4.1LG01g17120Silver-seed gourdcarcpeB0397
Cp4.1LG01g17120Cucumber (Chinese Long) v3cpecucB0557
Cp4.1LG01g17120Cucumber (Chinese Long) v3cpecucB0560
Cp4.1LG01g17120Wax gourdcpewgoB0540
Cp4.1LG01g17120Cucumber (Gy14) v1cgycpeB0502
Cp4.1LG01g17120Cucumber (Gy14) v1cgycpeB0524
Cp4.1LG01g17120Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g17120Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17120Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17120Cucurbita moschata (Rifu)cmocpeB682
Cp4.1LG01g17120Cucurbita moschata (Rifu)cmocpeB686