CmoCh04G019960 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G019960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 10532300 .. 10532536 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCGGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

mRNA sequence

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCGGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Coding sequence (CDS)

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCGGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA
Homology
[Close]
BLAST of CmoCh04G019960 vs. TrEMBL
Match: A0A0A0KP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.9e-26
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSGRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmoCh04G019960 vs. TrEMBL
Match: A0A151SBB2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELS 66
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

[Close]
BLAST of CmoCh04G019960 vs. NCBI nr
Match: gi|700196233|gb|KGN51410.1| (hypothetical protein Csa_5G528950 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSGRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmoCh04G019960 vs. NCBI nr
Match: gi|1012340892|gb|KYP52102.1| (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-11
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELS 66
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

The following BLAST results are available for this feature:
BLAST of CmoCh04G019960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G019960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP64_CUCSA7.9e-2685.14Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1[more]
A0A151SBB2_CAJCA5.5e-1168.52Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1[more]
BLAST of CmoCh04G019960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G019960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196233|gb|KGN51410.1|1.1e-2585.14hypothetical protein Csa_5G528950 [Cucumis sativus][more]
gi|1012340892|gb|KYP52102.1|7.9e-1168.52hypothetical protein KK1_026012, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019960.1CmoCh04G019960.1mRNA


Synteny