CmaCh04G018940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G018940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 9878718 .. 9878954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

mRNA sequence

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Coding sequence (CDS)

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Protein sequence

MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLISPPEELSRRSQRLIRHCRLL
Homology
[Close]
BLAST of CmaCh04G018940 vs. TrEMBL
Match: A0A0A0KP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-26
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLISP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP ISP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmaCh04G018940 vs. TrEMBL
Match: A0A151SBB2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLISPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP I  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]
BLAST of CmaCh04G018940 vs. NCBI nr
Match: gi|700196233|gb|KGN51410.1| (hypothetical protein Csa_5G528950 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1 

Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLISP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP ISP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmaCh04G018940 vs. NCBI nr
Match: gi|1012340892|gb|KYP52102.1| (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLISPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP I  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

The following BLAST results are available for this feature:
BLAST of CmaCh04G018940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G018940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP64_CUCSA2.1e-2687.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1[more]
A0A151SBB2_CAJCA1.5e-1170.91Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1[more]
BLAST of CmaCh04G018940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G018940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196233|gb|KGN51410.1|3.0e-2687.84hypothetical protein Csa_5G528950 [Cucumis sativus][more]
gi|1012340892|gb|KYP52102.1|2.1e-1170.91hypothetical protein KK1_026012, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G018940.1CmaCh04G018940.1mRNA