Cp4.1LG01g16770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g16770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCytochrome c
LocationCp4.1LG01 : 10565536 .. 10567044 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGCTTTGACGAAGCCCCCCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGAGCTGGTCACAAGCAAGGTCCTTCTTTCTCTTACTCCATTAGGCTCTTCTTATTCATATGTAAGAATTTCTTTGCGATTGGAGATCATTTGGTCTCTGTTGGTAATATGAACGTATCCAACCGTCTTCGGGGATCGTGACGCTGATTTGAGCTAGCTTCAACCGATCTGATTGTTCTCTCTCTCTTTCTCTCCCCCCTCCCCAGCGCACTAGGTTTATAATAGTTAGTATCGGCCTTGATAAACACTTTTCGTGGAATCTCACTTGTCCTTGTCCGAGAAGGAAACCCCGAAGGCATATATATTTTGGTTATTTGATTTGATGAAACGAATTTTAACATTTAGAAACGTATACTATTATAGAAGCTATTACTAATATATCATATTTATATCTTTTTAAATTCTGGTTTTTTAGAAATTGTTATCATCTATTAACTTGGTATGATAAGGTGGTATGTTTTTGTTTGATGTGATAGACATTGTTCAATATAAATTCTGATCGAGGTTAACGATTTAATCTACATTTATCTGTGTCCATTTTTTGTATATTTTCTATTGTGGTTCTAGCTGCTATTCTTGTTATCTTATTTGTTATGATGATCAAGTTTTAACATCTCAACCTGGATGAAAATGTTGGGGTCTTAATTTAACAGAGATAAATGACCATTGAAGTATCGATTAAATGTCGGATGTAAATTTCTGGCTAAGTTACAAACAATGAATTCTAAACAAAAAAACATCGTGTAAATCAACATTTTTTAACTTTTAAAACAAGTTAAAATGACTATTTGACATTTTTTTTCCTCTTTTCTCTTTTTTTATTATTATAAATTTTTATGTTTCATGTTTTTTTTTTTAAATTGTATAATGGAAATGATGAATCACCCCTTTTGTTGATGTCAAATCCATGGATGTGGAAATATCGATGGAAATGTTGAGTCGATGGAAATTTAATTTACTGATAATGATTATATTTGACACTTTTAATTGGAGTAGAATTTGATCTCACCCCCCCGCTGGGTCATGGGGGAAAATCAGCTCTTCTTTGTTAGTATTTAAGTCGACACTAAAACTAGCAACGTCACTTGGATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCCGCTGCCANACCAAATGTACCTTCCATTTATGAAAGCATGAAGTACCCTTTGTATTCACTTAAGAGTCACATTTTAAAGAGAAGACGTTGTATTTGTGTTCAAAATTTGTCATGTATGGTAAGTAGTCGCTGGAATCAACCGTAGTTGCTTTTTGTTCCAAAAGAAGTTTTGCCTTAAGCTTACAATTTCCTTGTTGAATCTTAGGATTGTTAGGAGCAAAGTTAACACAATAACACTCCTAAAGTTAACACAATAG

mRNA sequence

ATGGCGAGCTTTGACGAAGCCCCCCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGAGCTGGTCACAAGCAAGGTCCTTCTTTCTCTTACTCCATTAGGCTCTTCTTATTCATATGTAAGAATTTCTTTGCGATTGGAGATCATTTGGTCTCTGTTGGTAATATGAACCAACGTCACTTGGATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCCGCTGCCANACCAAATGTACCTTCCATTTATGAAAGCATGAAGATTGTTAGGAGCAAAGTTAACACAATAACACTCCTAAAGTTAACACAATAG

Coding sequence (CDS)

ATGGCGAGCTTTGACGAAGCCCCCCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGAGCTGGTCACAAGCAAGGTCCTTCTTTCTCTTACTCCATTAGGCTCTTCTTATTCATATGTAAGAATTTCTTTGCGATTGGAGATCATTTGGTCTCTGTTGGTAATATGAACCAACGTCACTTGGATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCCGCTGCCANACCAAATGTACCTTCCATTTATGAAAGCATGAAGATTGTTAGGAGCAAAGTTAACACAATAACACTCCTAAAGTTAACACAATAG

Protein sequence

MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFSYSIRLFLFICKNFFAIGDHLVSVGNMNQRHLDLAGPNLNGLFGRQSGTTPGYSYSAAXPNVPSIYESMKIVRSKVNTITLLKLTQ
Homology
[Close]
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 2  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLN 41

[Close]
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 2  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLN 41

[Close]
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 2  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLN 41

[Close]
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match: CYC_VIGRR (Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 2  ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          ASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLN 41

[Close]
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.6e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASF EAPPGN KAGEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match: A0A078G9G4_BRANA (BnaA09g30340D protein OS=Brassica napus GN=BnaA09g30340D PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match: A0A078FH37_BRANA (BnaA07g10260D protein OS=Brassica napus GN=BnaC07g13460D PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match: A0A0D3D797_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match: M4E6Y6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match: M4D786_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TAIR10
Match: AT4G10040.1 (AT4G10040.1 cytochrome c-2)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-17
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. TAIR10
Match: AT1G22840.1 (AT1G22840.1 CYTOCHROME C-1)

HSP 1 Score: 83.6 bits (205), Expect = 9.8e-17
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match: gi|950955084|ref|XP_014496567.1| (PREDICTED: cytochrome c [Vigna radiata var. radiata])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match: gi|729296184|ref|XP_010542745.1| (PREDICTED: cytochrome c [Tarenaya hassleriana])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match: gi|674251607|gb|KFK44372.1| (hypothetical protein AALP_AA1G248700 [Arabis alpina])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match: gi|685330540|ref|XP_009103216.1| (PREDICTED: cytochrome c [Brassica rapa])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

[Close]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match: gi|685362536|ref|XP_009115594.1| (PREDICTED: cytochrome c [Brassica rapa])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 

Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPSFS 43
          MASFDEAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGP+ +
Sbjct: 1  MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLN 42

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g16770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYC_BRAOL1.2e-1692.68Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA1.2e-1692.68Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC_CUCMA1.2e-1692.68Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_VIGRR2.7e-1690.24Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1[more]
CYC_ORYSI4.6e-1688.10Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=3 SV=1[more]
BLAST of Cp4.1LG01g16770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078G9G4_BRANA6.0e-1590.48BnaA09g30340D protein OS=Brassica napus GN=BnaA09g30340D PE=3 SV=1[more]
A0A078FH37_BRANA6.0e-1590.48BnaA07g10260D protein OS=Brassica napus GN=BnaC07g13460D PE=3 SV=1[more]
A0A0D3D797_BRAOL6.0e-1590.48Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1[more]
M4E6Y6_BRARP6.0e-1590.48Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
M4D786_BRARP6.0e-1590.48Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
BLAST of Cp4.1LG01g16770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10040.13.4e-1785.71 cytochrome c-2[more]
AT1G22840.19.8e-1783.33 CYTOCHROME C-1[more]
BLAST of Cp4.1LG01g16770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|950955084|ref|XP_014496567.1|8.6e-1590.48PREDICTED: cytochrome c [Vigna radiata var. radiata][more]
gi|729296184|ref|XP_010542745.1|8.6e-1590.48PREDICTED: cytochrome c [Tarenaya hassleriana][more]
gi|674251607|gb|KFK44372.1|8.6e-1590.48hypothetical protein AALP_AA1G248700 [Arabis alpina][more]
gi|685330540|ref|XP_009103216.1|8.6e-1590.48PREDICTED: cytochrome c [Brassica rapa][more]
gi|685362536|ref|XP_009115594.1|8.6e-1590.48PREDICTED: cytochrome c [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0009055electron carrier activity
Vocabulary: INTERPRO
TermDefinition
IPR009056Cyt_c-like_dom
IPR002327Cyt_c_1A/1B
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0005740 mitochondrial envelope
cellular_component GO:0070469 respiratory chain
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g16770.1Cp4.1LG01g16770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002327Cytochrome c, class IA/ IBPANTHERPTHR11961CYTOCHROME Ccoord: 1..39
score: 1.1E-31coord: 79..108
score: 1.1
IPR009056Cytochrome c-like domainGENE3DG3DSA:1.10.760.10coord: 74..102
score: 1.0E-6coord: 9..41
score: 2.
IPR009056Cytochrome c-like domainPFAMPF00034Cytochrom_Ccoord: 13..95
score: 1.
IPR009056Cytochrome c-like domainPROFILEPS51007CYTCcoord: 10..127
score: 9
IPR009056Cytochrome c-like domainunknownSSF46626Cytochrome ccoord: 8..29
score: 8.38E-10coord: 69..103
score: 8.38E-10coord: 11..69
score: 1.5
NoneNo IPR availablePANTHERPTHR11961:SF8SUBFAMILY NOT NAMEDcoord: 1..39
score: 1.1E-31coord: 79..108
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g16770CmaCh04G019360Cucurbita maxima (Rimu)cmacpeB732
Cp4.1LG01g16770CmoCh04G020540Cucurbita moschata (Rifu)cmocpeB686
Cp4.1LG01g16770Cla016943Watermelon (97103) v1cpewmB455
Cp4.1LG01g16770ClCG11G000560Watermelon (Charleston Gray)cpewcgB365
Cp4.1LG01g16770Lsi11G000540Bottle gourd (USVL1VR-Ls)cpelsiB319
Cp4.1LG01g16770Bhi07G000003Wax gourdcpewgoB0559
Cp4.1LG01g16770Carg24966Silver-seed gourdcarcpeB1026
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g16770Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g16770Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g16770Watermelon (Charleston Gray)cpewcgB369