Cp4.1LG01g16270 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG01 : 9892903 .. 9893985 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTCTTCCTCCGCCGTTTTTTGCAGTTCTTTATGGAGCTTTGTTTTTTGCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGGGACTTTGGGTTTGACCCACTTGGTCTCTGTAAGTATCCTTGAATGATGAAAATCCCACGTCAATTAATTTAGAGAACGATAGCAGGTTTATAATGAAAGAATACTCTAAACCTTTTAGGAAGCCCAAAATAGAATTATGGAAAGTCCTGTTCACTAGAAATTTTTAAGGTTGTCTAGATTTAAAATCGTAACTATGTTTGTTTGCGTGTATGAATATTGATAGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

mRNA sequence

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

Coding sequence (CDS)

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

Protein sequence

LNGALSDLTGNGLRFSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF

Homology

[Close]

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.8e-103
Identity = 178/234 (76.07%), Postives = 187/234 (79.91%), Query Frame = 1


Query: 25  SNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL------------------------ 84
           ++FL G+RLR+ KY+    A  +  VC AADPDRPL                        
Sbjct: 32  ASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPL 91

Query: 85  -------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTT 144
                   LRWNQQAELVHCRWAMLGAAGIFIPE LTKIGILNTPSWYTAGE EYFTDTT
Sbjct: 92  GLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTT 151

Query: 145 TLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 204
           TLFIVEL+ IGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS
Sbjct: 152 TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 211

Query: 205 PEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           P KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265

[Close]

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 9.2e-100
Identity = 181/247 (73.28%), Postives = 192/247 (77.73%), Query Frame = 1


Query: 16  SQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCA-AADPDRPL----------- 75
           SQKNG       ++FL GKRLR+ K+ A  V  RS  V A AADPDRPL           
Sbjct: 20  SQKNGSIVGATKASFLGGKRLRVSKFIAP-VGSRSVAVSAVAADPDRPLWFPGSTPPEWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                L+WN QAELVH RWAMLGAAGIFIPEFLTKIG+LNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGE EYFTDTTTLF++EL+ IGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 228
           GLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.6e-97
Identity = 174/235 (74.04%), Postives = 186/235 (79.15%), Query Frame = 1


Query: 26  NFLTGKRLRLRK-YTAAAVAPRSAPVCA-AADPDRPL----------------------- 85
           +FL GK+LRL+K  T  AV+   A V A AADPDRP+                       
Sbjct: 18  SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDP 77

Query: 86  --------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT 145
                    L+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD 
Sbjct: 78  LGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 137

Query: 146 TTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 205
           TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 138 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197

Query: 206 SPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 1


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+   +DPD    L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EY
Sbjct: 90  PLGLGSDPDT---LKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY 149

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F D+TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + 
Sbjct: 150 FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMM 209

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           WG GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 210 WGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-45
Identity = 91/177 (51.41%), Postives = 112/177 (63.28%), Query Frame = 1


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+  A DP+    LRW  QAELV+ RWAMLG AG+ +PE  T IGI+N P WY AG+ EY
Sbjct: 78  PLGLAEDPEN---LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY 137

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL 
Sbjct: 138 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLN 197

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 226
           +         E + KEI NGRLAMLA +G   QH  TG GP DNL  H++DP H T+
Sbjct: 198 FA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245

[Close]

BLAST of Cp4.1LG01g16270 vs. TrEMBL
Match: A0A0A0KV98_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G589390 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.5e-112
Identity = 203/247 (82.19%), Postives = 206/247 (83.40%), Query Frame = 1


Query: 16  SQKNGCPKV-SNFLTGKRLRLRKYTAAA---VAPRSAPVCAAADPDRPL----------- 75
           S KNGCPK+ SNFLTGK+LRLR   AAA   VAPR+ PVCAAADPDRPL           
Sbjct: 20  SSKNGCPKLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTPPPWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 228
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. TrEMBL
Match: A0A059D8N4_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_B03494 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 9.3e-107
Identity = 195/243 (80.25%), Postives = 199/243 (81.89%), Query Frame = 1


Query: 17  QKNGCPKVSNFLTGKRLRLRKYTA-AAVAPRSAPVCAAADPDRPL--------------- 76
           QKNG    S+FLTGKRLR+ KYTA AA A R A VCA ADPDRPL               
Sbjct: 21  QKNG----SSFLTGKRLRVSKYTAPAAAAGRLATVCAVADPDRPLWFPGSTPPPWLDGSL 80

Query: 77  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 136
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 81  PGDFGFDPLGLGSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 140

Query: 137 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 196
           E EYFTDTTTLFI+ELIFIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 141 EQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 200

Query: 197 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 228
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 201 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. TrEMBL
Match: A0A0L9TES1_PHAAN (Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus angularis GN=LR48_Vigan635s004000 PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.0e-105
Identity = 191/249 (76.71%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 16  SQKNGC----PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL----------- 75
           SQKNG     PK S FL G++LR+ KYTAA     +  VCA ADPDRPL           
Sbjct: 33  SQKNGSVLGTPKAS-FLGGRKLRVNKYTAAVGVRSTTTVCAVADPDRPLWFPGSTPPPWL 92

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWN QAELVHCRWAMLGAAGIFIPEFLTKIG+LNTPSW
Sbjct: 93  DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSW 152

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGELEYFTDTTTLFIVEL FIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 153 YTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 212

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 230
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 213 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 272

[Close]

BLAST of Cp4.1LG01g16270 vs. TrEMBL
Match: A0A0D2Q8H6_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_002G183400 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.9e-104
Identity = 193/250 (77.20%), Postives = 200/250 (80.00%), Query Frame = 1


Query: 16  SQKNGC---PKVSNFLTGKRLR-LRKYTAAAVAPRSAPVCAAADPDRPL----------- 75
           SQK G       ++FLTGK+LR +RKYT  A  P + PVCAAADPDRPL           
Sbjct: 20  SQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGP-TFPVCAAADPDRPLWFPGSTPPPWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWN QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           Y+AG  EYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 231
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. TrEMBL
Match: A0A0S3RIJ2_PHAAN (Chlorophyll a-b binding protein, chloroplastic OS=Vigna angularis var. angularis GN=Vigan.02G338500 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.5e-104
Identity = 189/247 (76.52%), Postives = 196/247 (79.35%), Query Frame = 1


Query: 16  SQKNGC----PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL----------- 75
           SQKNG     PK S FL G++LR+ KYTAA     +  VCA ADPDRPL           
Sbjct: 20  SQKNGSVLGTPKAS-FLGGRKLRVNKYTAAVGVRSTTTVCAVADPDRPLWFPGSTPPPWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWN QAELVHCRWAMLGAAGIFIPEFLTKIG+LNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGELEYFTDTTTLFIVEL FIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 228
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 355.1 bits (910), Expect = 3.2e-98
Identity = 174/235 (74.04%), Postives = 186/235 (79.15%), Query Frame = 1


Query: 26  NFLTGKRLRLRK-YTAAAVAPRSAPVCA-AADPDRPL----------------------- 85
           +FL GK+LRL+K  T  AV+   A V A AADPDRP+                       
Sbjct: 18  SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDP 77

Query: 86  --------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT 145
                    L+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD 
Sbjct: 78  LGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 137

Query: 146 TTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 205
           TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 138 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197

Query: 206 SPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-61
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 1


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+   +DPD    L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EY
Sbjct: 90  PLGLGSDPDT---LKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY 149

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F D+TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + 
Sbjct: 150 FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMM 209

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           WG GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 210 WGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR10
Match: AT5G28450.1 (AT5G28450.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 204.1 bits (518), Expect = 9.0e-53
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 1


Query: 130 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 189
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 190 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 1


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+  A DP+    L+W  QAELV+ RWAMLG AG+ +PE  TKIGI+N P WY AG+ +Y
Sbjct: 79  PLGLAEDPEN---LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY 138

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL 
Sbjct: 139 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLN 198

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 226
           +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP H T+
Sbjct: 199 FA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-35
Identity = 76/176 (43.18%), Postives = 103/176 (58.52%), Query Frame = 1


Query: 59  PLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFI 118
           P  L+W  QAELVH R+AMLG AGI   + L   GI N P WY AG +++ F  T TL +
Sbjct: 78  PESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIV 137

Query: 119 VELIFIGWAEGRRWADILKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPLGWGSGSP 178
           V+ + +G+AE +R+ D + PG    +  F       L G + GYPGG   +PLG      
Sbjct: 138 VQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DV 197

Query: 179 EKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 231
           +   + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+    F
Sbjct: 198 QNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLF 252

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: gi|659090470|ref|XP_008446035.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 418.3 bits (1074), Expect = 8.6e-114
Identity = 206/248 (83.06%), Postives = 209/248 (84.27%), Query Frame = 1


Query: 16  SQKNGCPKV-SNFLTGKRLRLRKYTAAAV-APRSAPVCAAADPDRPL------------- 75
           S KNGCPK+ SNFL GK+LRLR   AAAV APRSAPVCAAADPDRPL             
Sbjct: 20  SSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAADPDRPLWFPGSTPPPWLDG 79

Query: 76  ------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 135
                              LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY+
Sbjct: 80  SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYS 139

Query: 136 AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 195
           AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL
Sbjct: 140 AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199

Query: 196 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 231
           WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: gi|449435085|ref|XP_004135326.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 412.9 bits (1060), Expect = 3.6e-112
Identity = 203/247 (82.19%), Postives = 206/247 (83.40%), Query Frame = 1


Query: 16  SQKNGCPKV-SNFLTGKRLRLRKYTAAA---VAPRSAPVCAAADPDRPL----------- 75
           S KNGCPK+ SNFLTGK+LRLR   AAA   VAPR+ PVCAAADPDRPL           
Sbjct: 20  SSKNGCPKLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTPPPWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 228
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: gi|659090472|ref|XP_008446036.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 412.9 bits (1060), Expect = 3.6e-112
Identity = 203/245 (82.86%), Postives = 206/245 (84.08%), Query Frame = 1


Query: 16  SQKNGCPKV-SNFLTGKRLRLRKYTAAAV-APRSAPVCAAADPDRPL------------- 75
           S KNGCPK+ SNFL GK+LRLR   AAAV APRSAPVCAAADPDRPL             
Sbjct: 20  SSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAADPDRPLWFPGSTPPPWLDG 79

Query: 76  ------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 135
                              LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY+
Sbjct: 80  SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYS 139

Query: 136 AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 195
           AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL
Sbjct: 140 AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199

Query: 196 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 228
           WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: gi|702278085|ref|XP_010044808.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 394.4 bits (1012), Expect = 1.3e-106
Identity = 195/243 (80.25%), Postives = 199/243 (81.89%), Query Frame = 1


Query: 17  QKNGCPKVSNFLTGKRLRLRKYTA-AAVAPRSAPVCAAADPDRPL--------------- 76
           QKNG    S+FLTGKRLR+ KYTA AA A R A VCA ADPDRPL               
Sbjct: 21  QKNG----SSFLTGKRLRVSKYTAPAAAAGRLATVCAVADPDRPLWFPGSTPPPWLDGSL 80

Query: 77  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 136
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 81  PGDFGFDPLGLGSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 140

Query: 137 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 196
           E EYFTDTTTLFI+ELIFIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 141 EQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 200

Query: 197 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 228
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 201 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: gi|920682343|gb|KOM29115.1| (hypothetical protein LR48_Vigan635s004000 [Vigna angularis])

HSP 1 Score: 389.4 bits (999), Expect = 4.3e-105
Identity = 191/249 (76.71%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 16  SQKNGC----PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL----------- 75
           SQKNG     PK S FL G++LR+ KYTAA     +  VCA ADPDRPL           
Sbjct: 33  SQKNGSVLGTPKAS-FLGGRKLRVNKYTAAVGVRSTTTVCAVADPDRPLWFPGSTPPPWL 92

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                LRWN QAELVHCRWAMLGAAGIFIPEFLTKIG+LNTPSW
Sbjct: 93  DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSW 152

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGELEYFTDTTTLFIVEL FIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 153 YTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 212

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 230
           GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 213 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 272

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB12_SOLLC	6.8e-103	76.07	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7...	[more]
CB12_PETHY	9.2e-100	73.28	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1	[more]
LHCA2_ARATH	5.6e-97	74.04	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
LHCA6_ARATH	1.2e-59	57.54	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
CB24_PEA	1.0e-45	51.41	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE...	[more]

BLAST of Cp4.1LG01g16270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV98_CUCSA	2.5e-112	82.19	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G58939...	[more]
A0A059D8N4_EUCGR	9.3e-107	80.25	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
A0A0L9TES1_PHAAN	3.0e-105	76.71	Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus angularis GN=LR48_Vi...	[more]
A0A0D2Q8H6_GOSRA	1.9e-104	77.20	Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_00...	[more]
A0A0S3RIJ2_PHAAN	2.5e-104	76.52	Chlorophyll a-b binding protein, chloroplastic OS=Vigna angularis var. angularis...	[more]

BLAST of Cp4.1LG01g16270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61470.1	3.2e-98	74.04	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	6.9e-61	57.54	photosystem I light harvesting complex gene 6	[more]
AT5G28450.1	9.0e-53	91.84	Chlorophyll A-B binding family protein	[more]
AT3G47470.1	1.6e-46	50.28	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.7e-35	43.18	photosystem I light harvesting complex gene 5	[more]

BLAST of Cp4.1LG01g16270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090470\|ref\|XP_008446035.1\|	8.6e-114	83.06	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis ...	[more]
gi\|449435085\|ref\|XP_004135326.1\|	3.6e-112	82.19	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus]	[more]
gi\|659090472\|ref\|XP_008446036.1\|	3.6e-112	82.86	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Cucumis ...	[more]
gi\|702278085\|ref\|XP_010044808.1\|	1.3e-106	80.25	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Eucalyptus grandis]	[more]
gi\|920682343\|gb\|KOM29115.1\|	4.3e-105	76.71	hypothetical protein LR48_Vigan635s004000 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16270.1	Cp4.1LG01g16270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 62..228 score: 9.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..202 score: 8.9
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 61..227 score: 5.8
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 61..227 score: 1.57
None	No IPR available	PANTHER	PTHR21649:SF13	LHCA2 PROTEIN	coord: 62..228 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16270	Cucsa.075700	Cucumber (Gy14) v1	cgycpeB0123
Cp4.1LG01g16270	CmaCh18G006940	Cucurbita maxima (Rimu)	cmacpeB431
Cp4.1LG01g16270	CmaCh04G018360	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16270	CmoCh04G019320	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g16270	CmoCh18G006280	Cucurbita moschata (Rifu)	cmocpeB393
Cp4.1LG01g16270	Cla022963	Watermelon (97103) v1	cpewmB463
Cp4.1LG01g16270	Csa5G589390	Cucumber (Chinese Long) v2	cpecuB440
Cp4.1LG01g16270	MELO3C011865	Melon (DHL92) v3.5.1	cpemeB364
Cp4.1LG01g16270	ClCG11G013660	Watermelon (Charleston Gray)	cpewcgB364
Cp4.1LG01g16270	CSPI05G21410	Wild cucumber (PI 183967)	cpecpiB440
Cp4.1LG01g16270	Lsi04G006830	Bottle gourd (USVL1VR-Ls)	cpelsiB353
Cp4.1LG01g16270	MELO3C011865.2	Melon (DHL92) v3.6.1	cpemedB424
Cp4.1LG01g16270	CsaV3_5G030270	Cucumber (Chinese Long) v3	cpecucB0544
Cp4.1LG01g16270	Bhi07G001531	Wax gourd	cpewgoB0555
Cp4.1LG01g16270	CsGy5G020930	Cucumber (Gy14) v2	cgybcpeB649
Cp4.1LG01g16270	Carg21227	Silver-seed gourd	carcpeB0971
Cp4.1LG01g16270	Carg19256	Silver-seed gourd	carcpeB0414

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g16270	Cp4.1LG09g05910	Cucurbita pepo (Zucchini)	cpecpeB033

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16270	Cucurbita pepo (Zucchini)	cpecpeB406
Cp4.1LG01g16270	Cucurbita maxima (Rimu)	cmacpeB186
Cp4.1LG01g16270	Cucurbita moschata (Rifu)	cmocpeB162
Cp4.1LG01g16270	Silver-seed gourd	carcpeB0888