Carg21227 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21227
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_149 : 286257 .. 288082 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATCCAAACCCACACGGTCATCTTCATCACTCAAATTTCCCATTTTACAGCTAAAGTGATCCGACTCGAAATGGCCTCGGCTTGTGCTTCTTCTGCCATCACGGCGGTCGCAATTTCTTCATCAAGGCAACTTATTCTCTCATTCATCTTCTTTATTTTCCTAAACTAGTCGTTTCAACTAAATTATTAATTATGAAGCTAAACGTTTTGCAGTTCTCAGAAGAACGGGTGTCCAAAGGCTTCTAATTTCGTAACAGGGAAGAAATTGAGGTTGAGAAAGTACACTACCGGCGTTGTTGCTCCTCGATCTGCTCCAGTTTGTGCCGCTACTGACCCCAACAGACCCCTTTGGTTCCCTGGTAGCACCCCTCCTCCGTGGCTTGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTTTGTAAGTGTTAAACCACTGTTAAATTACTATTGAGTACCAGTGAATTGAGTTGGACCAGACTGAACAACCCAACTGTTCAAATAGTAAAAATTTTCAATATATACCATTTTTATTAAACAATGAATTCAACCTAATTGAACGGTTCAGATTGTCCGAGTCATTTATTTACGATTATAAATAAAATATTAGCTCGTAAAATATATATTTACCTTTTATATAATTAAAAATTATTAAAGTGGAAGAATTAAATAAAAACAATATATATATATAAATTTAGTAATTATATATATAATTGTAGCGGAATTAAAAATATCACCTGTATTTTGGTAGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAGGCGGAGCTGGTGCACTGCCGGTGGGCAATGTTAGGCGCTGCCGGAATTTTCATACCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACACCGCCGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCGTCGTCGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATTCTCAAACCCGGCTGCGTCAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGAACGGACGTTGGGTACCCAGGAGGGCTGTGGTTCGACCCGCTCGGATGGGGTAGCGGGTCACCCGAAAAGATCAAGGAGTTGAGAACTAAAGAGATCAAGAACGGTCGATTGGCTATGTTGGCAGTGATGGGTGCATGGTTTCAACACATTTACACCGGCACCGGTCCCATCGACAATCTTTTCGCGCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGTAAGTTTTAACCTAGGATTAGGAAGGTCTTGAGATTAAATAGTGTGGTAAATTTTAGGGTTTAACTGTTGTGTTCTTCTTTTTTACAGGCTTTTACTCCCAAGTGAAGAAATTGAAGAGCATAGGAGGCGTGTGTATCAAATCATAACTTGAAAACTATGTGTTTATGTCTTGTGTATGGACATTGATATCAATTTCATGTACAAATGAGAACGGGAATTAAGGAAGTTTTAGACGCGTTTTGAGTTCTTGAATCTCTGCGTATGCTCTATGGTTGCAATTTTGTATGAACGGTTATATCAGACTAAATTTGGCTATGATCATTCTTGCAAATGTAAACGAAATTTCAGACTTTGAGAGGAGCTTGAGGTGATGTACCACCCAACGAGCATCTCAAATTAGCAATACGTGTAGTGTCATACCCAACGATCCAAACTTTTGATGAAGGAATAACAGTTGAATCAAAGAAAATAATAATTTTTTATACAAAATTCGGATCAAACAAAGAATAATTCTAGAATTAGATTACTTTAAAGATCAAAGATCTAGA

mRNA sequence

TTCAATCCAAACCCACACGGTCATCTTCATCACTCAAATTTCCCATTTTACAGCTAAAGTGATCCGACTCGAAATGGCCTCGGCTTGTGCTTCTTCTGCCATCACGGCGGTCGCAATTTCTTCATCAAGGCAACTTATTCTCTCATTCATCTTCTTTATTTTCCTAAACTAGTCGTTTCAACTAAATTATTAATTATGAAGCTAAACGTTTTGCAGTTCTCAGAAGAACGGGTGTCCAAAGGCTTCTAATTTCGTAACAGGGAAGAAATTGAGGTTGAGAAAGTACACTACCGGCGTTGTTGCTCCTCGATCTGCTCCAGTTTGTGCCGCTACTGACCCCAACAGACCCCTTTGGTTCCCTGGTAGCACCCCTCCTCCGTGGCTTGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTTTCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAGGCGGAGCTGGTGCACTGCCGGTGGGCAATGTTAGGCGCTGCCGGAATTTTCATACCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACACCGCCGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCGTCGTCGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATTCTCAAACCCGGCTGCGTCAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGAACGGACGTTGGGTACCCAGGAGGGCTGTGGTTCGACCCGCTCGGATGGGGTAGCGGGTCACCCGAAAAGATCAAGGAGTTGAGAACTAAAGAGATCAAGAACGGTCGATTGGCTATGTTGGCAGTGATGGGTGCATGGTTTCAACACATTTACACCGGCACCGGTCCCATCGACAATCTTTTCGCGCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTTACTCCCAAGTGAAGAAATTGAAGAGCATAGGAGGCGTGTGTATCAAATCATAACTTGAAAACTATGTGTTTATGTCTTGTGTATGGACATTGATATCAATTTCATGTACAAATGAGAACGGGAATTAAGGAAGTTTTAGACGCGTTTTGAGTTCTTGAATCTCTGCGTATGCTCTATGGTTGCAATTTTGTATGAACGGTTATATCAGACTAAATTTGGCTATGATCATTCTTGCAAATGTAAACGAAATTTCAGACTTTGAGAGGAGCTTGAGGTGATGTACCACCCAACGAGCATCTCAAATTAGCAATACGTGTAGTGTCATACCCAACGATCCAAACTTTTGATGAAGGAATAACAGTTGAATCAAAGAAAATAATAATTTTTTATACAAAATTCGGATCAAACAAAGAATAATTCTAGAATTAGATTACTTTAAAGATCAAAGATCTAGA

Coding sequence (CDS)

ATGTTAGGCGCTGCCGGAATTTTCATACCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACACCGCCGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCGTCGTCGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATTCTCAAACCCGGCTGCGTCAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGAACGGACGTTGGGTACCCAGGAGGGCTGTGGTTCGACCCGCTCGGATGGGGTAGCGGGTCACCCGAAAAGATCAAGGAGTTGAGAACTAAAGAGATCAAGAACGGTCGATTGGCTATGTTGGCAGTGATGGGTGCATGGTTTCAACACATTTACACCGGCACCGGTCCCATCGACAATCTTTTCGCGCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTTACTCCCAAGTGA

Protein sequence

MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK

Homology

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BLAST of Carg21227 vs. NCBI nr
Match: XP_022945038.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 6.7e-90
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK
Sbjct: 112 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 171

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 172 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 231

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 232 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 267

[Close]

BLAST of Carg21227 vs. NCBI nr
Match: XP_022966812.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 6.7e-90
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK
Sbjct: 112 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 171

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 172 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 231

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 232 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 267

[Close]

BLAST of Carg21227 vs. NCBI nr
Match: XP_023541134.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.3 bits (869), Expect = 6.7e-90
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK
Sbjct: 112 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 171

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 172 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 231

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 232 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 267

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BLAST of Carg21227 vs. NCBI nr
Match: XP_004135326.1 (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus] >KGN51671.1 hypothetical protein Csa_5G589390 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 8.8e-90
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILK
Sbjct: 116 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK 175

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 176 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 235

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 236 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 271

[Close]

BLAST of Carg21227 vs. NCBI nr
Match: XP_011020754.1 (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like [Populus euphratica])

HSP 1 Score: 339.0 bits (868), Expect = 8.8e-90
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILK
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK 173

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 174 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 233

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 234 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 269

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BLAST of Carg21227 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 323.9 bits (829), Expect = 5.3e-89
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD TTLFVVELI IGWAEGRRWADI+K
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257

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BLAST of Carg21227 vs. TAIR10
Match: AT5G28450.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-56
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 54  RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 113
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 114 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 173

[Close]

BLAST of Carg21227 vs. TAIR10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 93/154 (60.39%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           ML   GI IPE L ++G +   SWY AG  EYF D+TTLFV +++ +GWAEGRRWAD++K
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIK 174

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG V+ +P +P+      DVGYPGGLWFD + WG GSPE +  LRTKEIKNGRLAMLA +
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFT 155
           G  FQ  YT   PI+NL AHLADPGH  VF+AFT
Sbjct: 235 GFCFQATYTSQDPIENLMAHLADPGHCNVFSAFT 268

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BLAST of Carg21227 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-39
Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLG AG+ +PE  TKIGI+N P WY AG+ +YF  ++TLFV+E I   + E RRW DI  
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 163

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG VN DPIF    L   +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +
Sbjct: 164 PGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFL 223

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 154
           G   QH  TG GP +NL  HL+DP H T+   F
Sbjct: 224 GFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

[Close]

BLAST of Carg21227 vs. TAIR10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-28
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFVVELIFIGWAEGRRWADIL 60
           MLG AGI   + L   GI N P WY AG +++ F  T TL VV+ + +G+AE +R+ D +
Sbjct: 96  MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 155

Query: 61  KPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAM 120
            PG    +  F       L G + GYPGG   +PLG      +   + + KEIKNGRLAM
Sbjct: 156 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAM 215

Query: 121 LAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 150
           +A++G + Q   T TGPIDNL  HL++P H T+
Sbjct: 216 MAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247

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BLAST of Carg21227 vs. Swiss-Prot
Match: sp|P13869|CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 3.9e-89
Identity = 147/156 (94.23%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIG+LNTPSWYTAGE EYFTDTTTLFV+EL+ IGWAEGRRWADI+K
Sbjct: 115 MLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIK 174

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVM
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAF+PK
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270

[Close]

BLAST of Carg21227 vs. Swiss-Prot
Match: sp|P10708|CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.5e-88
Identity = 147/156 (94.23%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPE LTKIGILNTPSWYTAGE EYFTDTTTLF+VEL+ IGWAEGRRWADI+K
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIK 174

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVM
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAF+PK
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270

[Close]

BLAST of Carg21227 vs. Swiss-Prot
Match: sp|Q9SYW8|LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 9.5e-88
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD TTLFVVELI IGWAEGRRWADI+K
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257

[Close]

BLAST of Carg21227 vs. Swiss-Prot
Match: sp|Q8LCQ4|LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.5e-53
Identity = 93/154 (60.39%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           ML   GI IPE L ++G +   SWY AG  EYF D+TTLFV +++ +GWAEGRRWAD++K
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIK 174

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG V+ +P +P+      DVGYPGGLWFD + WG GSPE +  LRTKEIKNGRLAMLA +
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFT 155
           G  FQ  YT   PI+NL AHLADPGH  VF+AFT
Sbjct: 235 GFCFQATYTSQDPIENLMAHLADPGHCNVFSAFT 268

[Close]

BLAST of Carg21227 vs. Swiss-Prot
Match: sp|P27521|CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-38
Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLG AG+ +PE  TKIGI+N P WY AG+ +YF  ++TLFV+E I   + E RRW DI  
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 163

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PG VN DPIF    L   +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +
Sbjct: 164 PGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFL 223

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 154
           G   QH  TG GP +NL  HL+DP H T+   F
Sbjct: 224 GFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

[Close]

BLAST of Carg21227 vs. TrEMBL
Match: tr|A0A0A0KV98|A0A0A0KV98_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G589390 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 5.8e-90
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILK
Sbjct: 116 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK 175

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 176 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 235

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 236 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 271

[Close]

BLAST of Carg21227 vs. TrEMBL
Match: tr|A0A1S3BDM5|A0A1S3BDM5_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488886 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.7e-89
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWY+AGELEYFTDTTTLF+VELIFIGWAEGRRWADILK
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILK 173

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 174 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 233

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK
Sbjct: 234 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 269

[Close]

BLAST of Carg21227 vs. TrEMBL
Match: tr|I1KHL5|I1KHL5_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max OX=3847 GN=100784089 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVEL FIGWAEGRRWADI+K
Sbjct: 115 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK 174

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 234

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 270

[Close]

BLAST of Carg21227 vs. TrEMBL
Match: tr|I1KHL4|I1KHL4_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max OX=3847 GN=100784089 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVEL FIGWAEGRRWADI+K
Sbjct: 127 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK 186

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 187 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 246

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 247 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 282

[Close]

BLAST of Carg21227 vs. TrEMBL
Match: tr|A0A151RB19|A0A151RB19_CAJCA (Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan OX=3821 GN=KK1_038953 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILK 60
           MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVEL FIGWAEGRRWADI+K
Sbjct: 140 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIK 199

Query: 61  PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
           PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM
Sbjct: 200 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 259

Query: 121 GAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 157
           GAWFQHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 260 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 295

The following BLAST results are available for this feature:

BLAST of Carg21227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945038.1	6.7e-90	100.00	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata]	[more]
XP_022966812.1	6.7e-90	100.00	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima]	[more]
XP_023541134.1	6.7e-90	100.00	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_004135326.1	8.8e-90	99.36	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus] >K...	[more]
XP_011020754.1	8.8e-90	99.36	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like [Populus euphra...	[more]

BLAST of Carg21227 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61470.1	5.3e-89	94.23	photosystem I light harvesting complex gene 2	[more]
AT5G28450.1	3.5e-56	92.23	Chlorophyll A-B binding family protein	[more]
AT1G19150.1	2.5e-54	60.39	photosystem I light harvesting complex gene 6	[more]
AT3G47470.1	1.0e-39	50.33	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.0e-28	42.48	photosystem I light harvesting complex gene 5	[more]

BLAST of Carg21227 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P13869\|CB12_PETHY	3.9e-89	94.23	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
sp\|P10708\|CB12_SOLLC	1.5e-88	94.23	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
sp\|Q9SYW8\|LHCA2_ARATH	9.5e-88	94.23	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
sp\|Q8LCQ4\|LHCA6_ARATH	4.5e-53	60.39	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
sp\|P27521\|CA4_ARATH	1.8e-38	50.33	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Carg21227 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KV98\|A0A0A0KV98_CUCSA	5.8e-90	99.36	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3BDM5\|A0A1S3BDM5_CUCME	1.7e-89	98.72	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|I1KHL5\|I1KHL5_SOYBN	2.9e-89	98.08	Chlorophyll a-b binding protein, chloroplastic OS=Glycine max OX=3847 GN=1007840...	[more]
tr\|I1KHL4\|I1KHL4_SOYBN	2.9e-89	98.08	Chlorophyll a-b binding protein, chloroplastic OS=Glycine max OX=3847 GN=1007840...	[more]
tr\|A0A151RB19\|A0A151RB19_CAJCA	2.9e-89	98.08	Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan OX=3821 GN=KK1_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21227-RA	Carg21227-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 1..146 e-value: 2.2E-58 score: 199.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..126 e-value: 1.5E-30 score: 106.7
None	No IPR available	PANTHER	PTHR21649:SF57	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 2, CHLOROPLASTIC	coord: 1..152
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 1..154
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..152

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21227	Cla022963	Watermelon (97103) v1	carwmB0687
Carg21227	Csa5G589390	Cucumber (Chinese Long) v2	carcuB0713
Carg21227	MELO3C011865	Melon (DHL92) v3.5.1	carmeB0689
Carg21227	ClCG11G013660	Watermelon (Charleston Gray)	carwcgB0664
Carg21227	CSPI05G21410	Wild cucumber (PI 183967)	carcpiB0727
Carg21227	Cucsa.075700	Cucumber (Gy14) v1	carcgyB0772
Carg21227	CmaCh04G018360	Cucurbita maxima (Rimu)	carcmaB0971
Carg21227	CmaCh18G006940	Cucurbita maxima (Rimu)	carcmaB0970
Carg21227	CmoCh04G019320	Cucurbita moschata (Rifu)	carcmoB0945
Carg21227	CmoCh18G006280	Cucurbita moschata (Rifu)	carcmoB0944
Carg21227	Lsi04G006830	Bottle gourd (USVL1VR-Ls)	carlsiB629
Carg21227	Cp4.1LG09g05910	Cucurbita pepo (Zucchini)	carcpeB0970
Carg21227	Cp4.1LG01g16270	Cucurbita pepo (Zucchini)	carcpeB0971
Carg21227	CsGy5G020930	Cucumber (Gy14) v2	carcgybB0690
Carg21227	MELO3C011865.2	Melon (DHL92) v3.6.1	carmedB0702
Carg21227	CsaV3_5G030270	Cucumber (Chinese Long) v3	carcucB0730
Carg21227	Cla97C11G219570	Watermelon (97103) v2	carwmbB0716
Carg21227	Bhi07G001531	Wax gourd	carwgoB0811

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21227	Cucurbita maxima (Rimu)	carcmaB0969
Carg21227	Cucurbita moschata (Rifu)	carcmoB0942
Carg21227	Cucurbita pepo (Zucchini)	carcpeB0972