CmoCh04G019320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G019320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chlorophyll a-b binding protein 7, chloroplastic
Location	Cmo_Chr04 : 9872268 .. 9873331 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTCTTCCTCCGCCGTTTTTTGCAGTTCTTTATGGAGCTTTGTTTTTTGCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGATAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTTGACCCACTTGGTCTCTGTAAGTATTGTTGTATGATGAAAGTTTCACGTCTGATTTACAATCGAGTAAATACTATCTTCATTAGTTTGAGGCCTTTTAGAAAGCCAACACCAGAACTTAGGCTCAAAGTGGATAATATCACCGTATTAAAATTTGAAATTTTTAAGGTTGTCAAGATATAAAATCATAACTATGTTTGTTTGCGTGTACGAATATTGATAGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCTGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

mRNA sequence

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGATAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTTGACCCACTTGGTCTCTCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCTGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

Coding sequence (CDS)

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGATAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTTGACCCACTTGGTCTCTCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCTGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

Homology

[Close]

BLAST of CmoCh04G019320 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 6.0e-135
Identity = 228/265 (86.04%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAA 60
           MASACASS IAAVA SS SS++NG       ++FL G+RLR+ KY+    A  +  VC A
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVA 60

Query: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAG 120
           ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAG
Sbjct: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 120

Query: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNT 180
           IFIPE LTKIGILNTPSWYTAGE EYFTDTTTLFIVEL+ IGWAEGRRWADI+KPGCVNT
Sbjct: 121 IFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNT 180

Query: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
           DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 240

Query: 241 IYTGTGPIDNLFAHLADPGHATVFA 263
           IYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATIFA 265

[Close]

BLAST of CmoCh04G019320 vs. Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 8.9e-131
Identity = 227/266 (85.34%), Postives = 238/266 (89.47%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCA- 60
           MASACASS IAAVA SS SSQKNG       ++FL GKRLR+ K+ A  V  RS  V A 
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAP-VGSRSVAVSAV 60

Query: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAA 120
           AADPDRPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPESL+WN QAELVH RWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKIG+LNTPSWYTAGE EYFTDTTTLF++EL+ IGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFA 263
           HIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA 265

[Close]

BLAST of CmoCh04G019320 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 5.2e-123
Identity = 214/263 (81.37%), Postives = 229/263 (87.07%), Query Frame = 1


Query: 2   ASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRK-YTAAAVAPRSAPVCA-AAD 61
           +S CASSAIAA++  S             FL GK+LRL+K  T  AV+   A V A AAD
Sbjct: 3   SSLCASSAIAAISSPS-------------FLGGKKLRLKKKLTVPAVSRPDASVRAVAAD 62

Query: 62  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 121
           PDRP+WFPGSTPP WLDGSLPGDFGFDPLGLSSDP+SL+WN QAE+VHCRWAMLGAAGIF
Sbjct: 63  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 122

Query: 122 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 181
           IPEFLTKIGILNTPSWYTAGE EYFTD TTLF+VELI IGWAEGRRWADI+KPG VNTDP
Sbjct: 123 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 182

Query: 182 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 241
           +FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 183 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 242 TGTGPIDNLFAHLADPGHATVFA 263
           TGTGPIDNLFAHLADPGHAT+FA
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of CmoCh04G019320 vs. Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.4e-82
Identity = 148/265 (55.85%), Postives = 180/265 (67.92%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQK--NGCPKV-SNFLTGKRLRLRKYTAAAVAPRSAPVCAA 60
           MA A AS+  + + +S+S  Q      P V S   TG RL   +          + VC  
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAG 120
             PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDP++L+W  QAEL+H RWAML   G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNT 180
           I IPE L ++G +   SWY AG  EYF D+TTLF+ +++ +GWAEGRRWAD++KPG V+ 
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
           +P +P+      DVGYPGGLWFD + WG GSPE +  LRTKEIKNGRLAMLA +G  FQ 
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGTGPIDNLFAHLADPGHATVFA 263
            YT   PI+NL AHLADPGH  VF+
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of CmoCh04G019320 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-59
Identity = 119/251 (47.41%), Postives = 149/251 (59.36%), Query Frame = 1


Query: 10  IAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGS 69
           +A V   +S++    C   S FL G   +L +  A      S       +  +  W PG 
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 70  TPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGI 129
             P +L GSLPGD GFDPLGL+ DPE+LRW  QAELV+ RWAMLG AG+ +PE  T IGI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 130 LNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGT 189
           +N P WY AG+ EYF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 190 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 249
           +VGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DNL 
Sbjct: 181 EVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLL 240

Query: 250 AHLADPGHATV 261
            H++DP H T+
Sbjct: 241 QHISDPWHNTI 245

[Close]

BLAST of CmoCh04G019320 vs. TrEMBL
Match: A0A0A0KV98_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G589390 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 6.9e-146
Identity = 253/266 (95.11%), Postives = 257/266 (96.62%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKV-SNFLTGKRLRLRKYTAAA---VAPRSAPVCA 60
           MASACASSAIAAVAISSSSS KNGCPK+ SNFLTGK+LRLR   AAA   VAPR+ PVCA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCA 60

Query: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAA 120
           AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFA 263
           HIYTGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATVFA 266

[Close]

BLAST of CmoCh04G019320 vs. TrEMBL
Match: A0A059D8N4_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_B03494 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.8e-139
Identity = 243/263 (92.40%), Postives = 247/263 (93.92%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTA-AAVAPRSAPVCAAAD 60
           MAS CASSAIAAVAISS S QKNG    S+FLTGKRLR+ KYTA AA A R A VCA AD
Sbjct: 1   MASVCASSAIAAVAISSPSGQKNG----SSFLTGKRLRVSKYTAPAAAAGRLATVCAVAD 60

Query: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120
           PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGE EYFTDTTTLFI+ELIFIGWAEGRRWADI+KPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 263
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 259

[Close]

BLAST of CmoCh04G019320 vs. TrEMBL
Match: A9PGU3_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.9e-137
Identity = 238/265 (89.81%), Postives = 246/265 (92.83%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAA 60
           MAS CASSAIAAV+ISSSSSQK G       ++FL+GK+LRL+KYTA   A RS  VC A
Sbjct: 1   MASVCASSAIAAVSISSSSSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAA-RSVTVCVA 60

Query: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAG 120
           ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPE+LRWN QAELVHCRWAMLGAAG
Sbjct: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120

Query: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNT 180
           IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL FIGWAEGRRWADILKPGCVNT
Sbjct: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNT 180

Query: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
           DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240

Query: 241 IYTGTGPIDNLFAHLADPGHATVFA 263
           IYTGTGPIDNLFAHLADPGHATVF+
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATVFS 264

[Close]

BLAST of CmoCh04G019320 vs. TrEMBL
Match: A0A0S3RIJ2_PHAAN (Chlorophyll a-b binding protein, chloroplastic OS=Vigna angularis var. angularis GN=Vigan.02G338500 PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 2.2e-136
Identity = 236/266 (88.72%), Postives = 245/266 (92.11%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC----PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCA 60
           MASACASSAIAAV+IS+ SSQKNG     PK S FL G++LR+ KYTAA     +  VCA
Sbjct: 1   MASACASSAIAAVSISTPSSQKNGSVLGTPKAS-FLGGRKLRVNKYTAAVGVRSTTTVCA 60

Query: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAA 120
            ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPESLRWN QAELVHCRWAMLGAA
Sbjct: 61  VADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKIG+LNTPSWYTAGELEYFTDTTTLFIVEL FIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGVLNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFA 263
           HIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA 265

[Close]

BLAST of CmoCh04G019320 vs. TrEMBL
Match: A0A0D2Q8H6_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_002G183400 PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 2.2e-136
Identity = 240/269 (89.22%), Postives = 248/269 (92.19%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC---PKVSNFLTGKRLR-LRKYTAAAVAPRSAPVCA 60
           MAS CASSAIAAVAISS SSQK G       ++FLTGK+LR +RKYT  A  P + PVCA
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGP-TFPVCA 60

Query: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAA 120
           AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPE+LRWN QAELVHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKIGILNTPSWY+AG  EYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFAVSF 266
           HIYTGTGPIDNLFAHLADPGHAT+FAVSF
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAVSF 268

[Close]

BLAST of CmoCh04G019320 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 441.8 bits (1135), Expect = 3.0e-124
Identity = 214/263 (81.37%), Postives = 229/263 (87.07%), Query Frame = 1


Query: 2   ASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRK-YTAAAVAPRSAPVCA-AAD 61
           +S CASSAIAA++  S             FL GK+LRL+K  T  AV+   A V A AAD
Sbjct: 3   SSLCASSAIAAISSPS-------------FLGGKKLRLKKKLTVPAVSRPDASVRAVAAD 62

Query: 62  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 121
           PDRP+WFPGSTPP WLDGSLPGDFGFDPLGLSSDP+SL+WN QAE+VHCRWAMLGAAGIF
Sbjct: 63  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 122

Query: 122 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 181
           IPEFLTKIGILNTPSWYTAGE EYFTD TTLF+VELI IGWAEGRRWADI+KPG VNTDP
Sbjct: 123 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 182

Query: 182 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 241
           +FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 183 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 242 TGTGPIDNLFAHLADPGHATVFA 263
           TGTGPIDNLFAHLADPGHAT+FA
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of CmoCh04G019320 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 306.2 bits (783), Expect = 1.9e-83
Identity = 148/265 (55.85%), Postives = 180/265 (67.92%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQK--NGCPKV-SNFLTGKRLRLRKYTAAAVAPRSAPVCAA 60
           MA A AS+  + + +S+S  Q      P V S   TG RL   +          + VC  
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAG 120
             PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDP++L+W  QAEL+H RWAML   G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNT 180
           I IPE L ++G +   SWY AG  EYF D+TTLF+ +++ +GWAEGRRWAD++KPG V+ 
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
           +P +P+      DVGYPGGLWFD + WG GSPE +  LRTKEIKNGRLAMLA +G  FQ 
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGTGPIDNLFAHLADPGHATVFA 263
            YT   PI+NL AHLADPGH  VF+
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of CmoCh04G019320 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-59
Identity = 118/252 (46.83%), Postives = 152/252 (60.32%), Query Frame = 1


Query: 10  IAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCA-AADPDRPLWFPG 69
           +A V   +S+S    C     FLTG   RL +  +      SA   +   +  +  W PG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 70  STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIG 129
              P +L GSL GD GFDPLGL+ DPE+L+W  QAELV+ RWAMLG AG+ +PE  TKIG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 130 ILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTG 189
           I+N P WY AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF    L  
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 190 TDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 249
            +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL
Sbjct: 181 GEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 240

Query: 250 FAHLADPGHATV 261
             HL+DP H T+
Sbjct: 241 LQHLSDPWHNTI 246

[Close]

BLAST of CmoCh04G019320 vs. TAIR10
Match: AT5G28450.1 (AT5G28450.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-52
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 1


Query: 165 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 224
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 225 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 263
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168

[Close]

BLAST of CmoCh04G019320 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-52
Identity = 107/245 (43.67%), Postives = 144/245 (58.78%), Query Frame = 1


Query: 32  LTGKRLRLRKYTAAAVAPRSAPVCAAADP-------DRPLWFPGSTPPPWLDGSLPGDFG 91
           +TG  L  R+  ++ +  R + V AA          +R  W PG  PPP+LDG+L GD+G
Sbjct: 9   ITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYG 68

Query: 92  FDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY- 151
           FDPLGL  DPESL+W  QAELVH R+AMLG AGI   + L   GI N P WY AG +++ 
Sbjct: 69  FDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFD 128

Query: 152 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFD 211
           F  T TL +V+ + +G+AE +R+ D + PG    +  F       L G + GYPGG   +
Sbjct: 129 FASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLN 188

Query: 212 PLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 266
           PLG      +   + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+
Sbjct: 189 PLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 248

[Close]

BLAST of CmoCh04G019320 vs. NCBI nr
Match: gi|659090470|ref|XP_008446035.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 530.0 bits (1364), Expect = 2.3e-147
Identity = 256/267 (95.88%), Postives = 260/267 (97.38%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKV-SNFLTGKRLRLRKYTAAA-VAPRSAPVCAAA 60
           MASACASSAIAAVAISSSSS KNGCPK+ SNFL GK+LRLR   AAA VAPRSAPVCAAA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAA 60

Query: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGI 120
           DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGI
Sbjct: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120

Query: 121 FIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180
           FIPEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD
Sbjct: 121 FIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180

Query: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240
           PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 241 YTGTGPIDNLFAHLADPGHATVFAVSF 266
           YTGTGPIDNLFAHLADPGHATVFAVSF
Sbjct: 241 YTGTGPIDNLFAHLADPGHATVFAVSF 267

[Close]

BLAST of CmoCh04G019320 vs. NCBI nr
Match: gi|449435085|ref|XP_004135326.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 9.8e-146
Identity = 253/266 (95.11%), Postives = 257/266 (96.62%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKV-SNFLTGKRLRLRKYTAAA---VAPRSAPVCA 60
           MASACASSAIAAVAISSSSS KNGCPK+ SNFLTGK+LRLR   AAA   VAPR+ PVCA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCA 60

Query: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAA 120
           AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 HIYTGTGPIDNLFAHLADPGHATVFA 263
           HIYTGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATVFA 266

[Close]

BLAST of CmoCh04G019320 vs. NCBI nr
Match: gi|659090472|ref|XP_008446036.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 524.6 bits (1350), Expect = 9.8e-146
Identity = 253/264 (95.83%), Postives = 257/264 (97.35%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKV-SNFLTGKRLRLRKYTAAA-VAPRSAPVCAAA 60
           MASACASSAIAAVAISSSSS KNGCPK+ SNFL GK+LRLR   AAA VAPRSAPVCAAA
Sbjct: 1   MASACASSAIAAVAISSSSSSKNGCPKLASNFLAGKKLRLRNLNAAAVVAPRSAPVCAAA 60

Query: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGI 120
           DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL+SDPESLRWNQQAELVHCRWAMLGAAGI
Sbjct: 61  DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 120

Query: 121 FIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180
           FIPEFLTKIGILNTPSWY+AGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD
Sbjct: 121 FIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTD 180

Query: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240
           PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI
Sbjct: 181 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHI 240

Query: 241 YTGTGPIDNLFAHLADPGHATVFA 263
           YTGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 YTGTGPIDNLFAHLADPGHATVFA 264

[Close]

BLAST of CmoCh04G019320 vs. NCBI nr
Match: gi|702278085|ref|XP_010044808.1| (PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 502.7 bits (1293), Expect = 4.0e-139
Identity = 243/263 (92.40%), Postives = 247/263 (93.92%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTA-AAVAPRSAPVCAAAD 60
           MAS CASSAIAAVAISS S QKNG    S+FLTGKRLR+ KYTA AA A R A VCA AD
Sbjct: 1   MASVCASSAIAAVAISSPSGQKNG----SSFLTGKRLRVSKYTAPAAAAGRLATVCAVAD 60

Query: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIF 120
           PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPESLRWNQQAELVHCRWAMLGAAGIF
Sbjct: 61  PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNQQAELVHCRWAMLGAAGIF 120

Query: 121 IPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 180
           IPEFLTKIGILNTPSWYTAGE EYFTDTTTLFI+ELIFIGWAEGRRWADI+KPGCVNTDP
Sbjct: 121 IPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDP 180

Query: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240
           IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY
Sbjct: 181 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 240

Query: 241 TGTGPIDNLFAHLADPGHATVFA 263
           TGTGPIDNLFAHLADPGHATVFA
Sbjct: 241 TGTGPIDNLFAHLADPGHATVFA 259

[Close]

BLAST of CmoCh04G019320 vs. NCBI nr
Match: gi|118487538|gb|ABK95596.1| (unknown [Populus trichocarpa])

HSP 1 Score: 494.2 bits (1271), Expect = 1.4e-136
Identity = 238/265 (89.81%), Postives = 246/265 (92.83%), Query Frame = 1


Query: 1   MASACASSAIAAVAISSSSSQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAA 60
           MAS CASSAIAAV+ISSSSSQK G       ++FL+GK+LRL+KYTA   A RS  VC A
Sbjct: 1   MASVCASSAIAAVSISSSSSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAA-RSVTVCVA 60

Query: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAG 120
           ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL SDPE+LRWN QAELVHCRWAMLGAAG
Sbjct: 61  ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120

Query: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNT 180
           IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL FIGWAEGRRWADILKPGCVNT
Sbjct: 121 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNT 180

Query: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
           DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240

Query: 241 IYTGTGPIDNLFAHLADPGHATVFA 263
           IYTGTGPIDNLFAHLADPGHATVF+
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATVFS 264

The following BLAST results are available for this feature:

BLAST of CmoCh04G019320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB12_SOLLC	6.0e-135	86.04	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7...	[more]
CB12_PETHY	8.9e-131	85.34	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1	[more]
LHCA2_ARATH	5.2e-123	81.37	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
LHCA6_ARATH	3.4e-82	55.85	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
CB24_PEA	5.3e-59	47.41	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE...	[more]

BLAST of CmoCh04G019320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV98_CUCSA	6.9e-146	95.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G58939...	[more]
A0A059D8N4_EUCGR	2.8e-139	92.40	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
A9PGU3_POPTR	9.9e-137	89.81	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa PE=2 SV=1	[more]
A0A0S3RIJ2_PHAAN	2.2e-136	88.72	Chlorophyll a-b binding protein, chloroplastic OS=Vigna angularis var. angularis...	[more]
A0A0D2Q8H6_GOSRA	2.2e-136	89.22	Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_00...	[more]

BLAST of CmoCh04G019320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61470.1	3.0e-124	81.37	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.9e-83	55.85	photosystem I light harvesting complex gene 6	[more]
AT3G47470.1	2.0e-59	46.83	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT5G28450.1	1.0e-52	91.84	Chlorophyll A-B binding family protein	[more]
AT1G45474.1	3.9e-52	43.67	photosystem I light harvesting complex gene 5	[more]

BLAST of CmoCh04G019320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090470\|ref\|XP_008446035.1\|	2.3e-147	95.88	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis ...	[more]
gi\|449435085\|ref\|XP_004135326.1\|	9.8e-146	95.11	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Cucumis sativus]	[more]
gi\|659090472\|ref\|XP_008446036.1\|	9.8e-146	95.83	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Cucumis ...	[more]
gi\|702278085\|ref\|XP_010044808.1\|	4.0e-139	92.40	PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Eucalyptus grandis]	[more]
gi\|118487538\|gb\|ABK95596.1\|	1.4e-136	89.81	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019320.1	CmoCh04G019320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..263 score: 3.8E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 71..237 score: 1.0
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 62..262 score: 2.4
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 58..262 score: 1.83
None	No IPR available	PANTHER	PTHR21649:SF13	LHCA2 PROTEIN	coord: 1..263 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G019320	Cucsa.075700	Cucumber (Gy14) v1	cgycmoB0123
CmoCh04G019320	CmaCh18G006940	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G019320	CmaCh04G018360	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G019320	Cla022963	Watermelon (97103) v1	cmowmB732
CmoCh04G019320	Csa5G589390	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G019320	MELO3C011865	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G019320	ClCG11G013660	Watermelon (Charleston Gray)	cmowcgB631
CmoCh04G019320	CSPI05G21410	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G019320	Lsi04G006830	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G019320	Cp4.1LG09g05910	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G019320	Cp4.1LG01g16270	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G019320	MELO3C011865.2	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G019320	CsaV3_5G030270	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G019320	Cla97C11G219570	Watermelon (97103) v2	cmowmbB707
CmoCh04G019320	Bhi07G001531	Wax gourd	cmowgoB0890
CmoCh04G019320	CsGy5G020930	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G019320	Carg21227	Silver-seed gourd	carcmoB0945
CmoCh04G019320	Carg19256	Silver-seed gourd	carcmoB0409

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G019320	CmoCh18G006280	Cucurbita moschata (Rifu)	cmocmoB337

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G019320	Cucurbita pepo (Zucchini)	cmocpeB710
CmoCh04G019320	Silver-seed gourd	carcmoB0858
CmoCh04G019320	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh04G019320	Cucurbita maxima (Rimu)	cmacmoB189