Cp4.1LG01g16260 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome oxidase assembly 3, mitochondrial
Location	Cp4.1LG01 : 9921690 .. 9924938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTTTCATGAACTATTGCGTGTTTGCGTTCCTCGATCGTTTATAAAGATTGAAGTAATTATTTTGTTCGAATTGGTGGAGGTTAACCTGTTAAATGATTCGTGATGCAATTTGTAAATTCTTTTCTGCTTTATGATTTCTTAATGGTAATCACTAGTCATGGCGTAGAGCTTAGTTTGCTTTCATCATTGTCTGGATTATTATTAGTTAGTATTGATGGTAAGTTAAACACAGGAAATGAAAACTCTAGCTATATCACAACACAACCAAACAATTACGATATGCTCCTCCATGCAAATGCCTCTTTAGGAGAAAGAGAGCATGGAGCTTGGACCAAATTCTATTGAAATTTTGAGTTGACTGGGACTTGGTAGAAATACTAGCAACTTTTGAATCGGTAGGATGTGTTTAAACCATGAGTGTTGCACCAGATTAGCACGAAGGTGCAGAACTCAAATTATCACAGTAAATTACAGGACACTGATACTGGAAAAATATACAGCTCACGCGTCAAGAATTGCAATCGAACTTAACTCAGCAGTGGCGCAAGCAAGAATCCCAATTTCAGCCTAACTGCCAGACTGGGAGTGTTTGTTGTTATGAGAGGACTTTCGATCATTTGGATTAGACCCCAGTCAACATTTGTGAGCTCATAAATATTTGCCAAGGAAGGTTTAGAAAGAGGCACAATCAATAGTGCCATTGAGCTAACATAAAGTTTGTTTTAACGCTTCTCATTGCTGATGAAGTGGTAAGTTTTAACGAGCCTACCATCCAAGAACTAACCATTGCCCTTTGCTGCTAGTAATGGGAACTACGCACCATAGAAGTTGTAATAGGATTGGAAAATGCTTCCTTAGTAATTATCTACCACTAAGAAAAGAAGTCAACTCGAATCCTAGAAAATAGCTAGAGTGCCAAGGATTCTAAGTGCAAAGCTGTAAAGCAAAATTTAAATAATCAACCAAAAGGTTTGAGCAACACATGTCAATTGGCTTGGTCTTTATATGCTTTGATCGGAGTCCCTCTCTTTAGGCTGCTCCCTTTTATGGGGTTGTTTTGTTGTATGCCTTGTATTCATTCCTTAATAATAATGAACCATGTCAATAGGTTTGATTTGATAAATTTTGGTACTAAAGATAAGTTGATCCAGTTCTGATCATATTGGTTGGTTTTGGTCGGAGTCAGTTTGGTAGATATTGATTGGTTTTCATCTGGCACTTAGTTTGGTTTTCTGGAATAGGTTGGTTTCATGCCGTGTTCAATCAACCCACTTGGCAATTGACAATTGCATCCGTACTGTTAAGACAATTTCTGTTACAATAATATATTAATATTTAATATCATCATGTAGAAGGATGCAGTAACAATTCAAATCTGTGAACCTGTTGTCCTGTATAATTGTGAGTGGTCAACAATAACATTTAAATTCCAGAATCCCACAGAAAGAACCTTACTTGAACAACATCTATTCTATAGTTGGGCTGTACATCGGTGTCCTTGAGTTCCAACCCATAGTAAGAAGAAAAATACATGGTGTATTAAACCAGGTCTTAGATGCCGCTGTATGAAGTTTATGCACATGAGTGTGATCATGAGAAGAACCCAAACCTGGACCCTGTTTCATGTGGACATCAGCAGTATCCTATTTTTGTAGTGTCCAACCAGTAAGCAAGAGCAACAGTGAGAACCATCCTAGTTTGATCATGAGAAGAACTCAATACTAAAGGCTTCACAATGATCGACATCCAGGCCATTAACTTGACCTTTTAATGAACTACTGCCCCATCTGGATATCTCTTGATTTTAAATACCCGTTTACGCCTCGCAATCATAGATGAAAAACTTAGTTGGCAATGCTGGATGTCAACAAATTTCTCAGGAAGTTGTTTATAATTATAGATGTACCATTCGAAGTGGAATCCATTTATTCCGCCAGGGTTTAATGCTTCCAGACAATTTGTAACCATTCGGGATCTTGAGGTGGACATGGCTACCCTTTCCTTCACTTAGCTGAGCTTTTAATGCTCTGCTACCATCTTAAGAAAGCAGATGTATTAATGGAAAGATCACTTTTTTAAAAATCTCGTATACTCGTAATACGTAGCTGTGGGCTTACCAAGTGTTGCTTAATGGTCTAACAAACTAGAACTTGCTGAAATATTGCCAGCTAACTGTGTCTGCTACAACTAAACTGAACTGGATGAACAGGTATTCCAAACTAAAGCACCCAAAGTCATTTATATTTCTGTGGTTTTCTTGGAGATGTTTCCCAACATATTTGCATAGTCGCTTTCTCCCCTTTTGTATAACTTGATTAAGTGTGGAGTGAATTTTCCTGATTAGCTTCTCCCAACAAGCAATAGCCCTTGATTTTTAGTACTATCATTCATTATTTGTCTTTGCAAGACTTGTTCGTGTGAAAACCATTATATTGCCACTGGATAATAGTCTAATTGGTATAATATTGACATGCTTGCAGCGTTAAAAGCATAACAAAACATCCGTGTCTTTGCCTGCTAAATGGCTGGACTTTTGGGATTGAGGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGTGTAGCCTTGCAATAAACCTGTTTGCATTGGCATTCTGGAGACCAGGACAATGAAGACGCCAATGTCAGAGGAAAAGAACTGGTGAGTTTAACTTTTATACCGCCTTGTGGCTCTGTAAAAATAATGAATTCCTCGGCCTTTGTAAACAATAATAGGTTTTCCATGAACTCCAAGTAGAAATGTTATTGTGGTTGTTCAAGCTGCGGTCTCCATTTTTGGGAGTTCTAAAAAATTTGCTTTGACAATTCAAATGCTTGTAGTGATTCCAATACATGAACAGAAATGAATTCTTCAGAACACATGGTATGAATAGTGATTCACTGGTTTAAAATAGTTATCAGGGATAGCAAACTGCCATTTGTTTATGTTTTATGTATAGTACACTTGATATTAGATGCATCATAGGCACTTGCTCTCAGCTTTTGTAGTTCCATATTCTTCCCATTCAGCATTTAATCATAAAATGATGTATTGGTTTATTTCATGAACTTTAGTTAAATTTTTCTTATACAGCCAACAATGAATAGAACAATATGA

mRNA sequence

ATGATCATGTACCATTCGAAGTGGAATCCATTTATTCCGCCAGGGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGACAATGAAGACGCCAATGTCAGAGGAAAAGAACTGCCAACAATGAATAGAACAATATGA

Coding sequence (CDS)

ATGATCATGTACCATTCGAAGTGGAATCCATTTATTCCGCCAGGGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGACAATGAAGACGCCAATGTCAGAGGAAAAGAACTGCCAACAATGAATAGAACAATATGA

Protein sequence

MIMYHSKWNPFIPPGGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNDNEDANVRGKELPTMNRTI

Homology

[Close]

BLAST of Cp4.1LG01g16260 vs. TrEMBL
Match: A0A0A0KPU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589280 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-18
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 16 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSN 69
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+SN
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKESN 61

[Close]

BLAST of Cp4.1LG01g16260 vs. TrEMBL
Match: W9RFF6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020386 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 17 LAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNDN 71
          LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQ+AID+FEAQK  KD+  +
Sbjct: 8  LAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQMAIDKFEAQKGKKDAESS 61

[Close]

BLAST of Cp4.1LG01g16260 vs. TrEMBL
Match: A0A103XWT7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_023447 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-15
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 15  GGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 67
           G LAPKTKN+VVAGGLT FVFGVYFYTMRAVGGSDELQVAID+FE+QK   D
Sbjct: 68  GRLAPKTKNMVVAGGLTGFVFGVYFYTMRAVGGSDELQVAIDKFESQKIKND 119

[Close]

BLAST of Cp4.1LG01g16260 vs. TrEMBL
Match: A0A0B0MM85_GOSAR (Cytochrome oxidase assembly 3, mitochondrial OS=Gossypium arboreum GN=F383_20505 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 15 GGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK 63
          G LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE  K
Sbjct: 8  GSLAPKTKNMVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEELK 55

[Close]

BLAST of Cp4.1LG01g16260 vs. TrEMBL
Match: A0A059B6S7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04449 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 17  LAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNK 66
           LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGGSDELQ AID+FE QK  +
Sbjct: 121 LAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGSDELQTAIDKFEEQKSKQ 169

[Close]

BLAST of Cp4.1LG01g16260 vs. TAIR10
Match: AT2G43780.1 (AT2G43780.1 unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 17 LAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK 63
          L PK KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK
Sbjct: 10 LGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55

[Close]

BLAST of Cp4.1LG01g16260 vs. NCBI nr
Match: gi|659090456|ref|XP_008446026.1| (PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-18
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 16 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSN 69
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQK NK+SN
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKESN 61

[Close]

BLAST of Cp4.1LG01g16260 vs. NCBI nr
Match: gi|778704559|ref|XP_011655556.1| (PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 16 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSN 69
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+SN
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKESN 61

[Close]

BLAST of Cp4.1LG01g16260 vs. NCBI nr
Match: gi|703117409|ref|XP_010101371.1| (hypothetical protein L484_020386 [Morus notabilis])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 17 LAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNDN 71
          LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQ+AID+FEAQK  KD+  +
Sbjct: 8  LAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQMAIDKFEAQKGKKDAESS 61

[Close]

BLAST of Cp4.1LG01g16260 vs. NCBI nr
Match: gi|976911683|gb|KVH98324.1| (hypothetical protein Ccrd_023447 [Cynara cardunculus var. scolymus])

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 15  GGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 67
           G LAPKTKN+VVAGGLT FVFGVYFYTMRAVGGSDELQVAID+FE+QK   D
Sbjct: 68  GRLAPKTKNMVVAGGLTGFVFGVYFYTMRAVGGSDELQVAIDKFESQKIKND 119

[Close]

BLAST of Cp4.1LG01g16260 vs. NCBI nr
Match: gi|1021025485|gb|KZM83273.1| (hypothetical protein DCAR_030842 [Daucus carota subsp. sativus])

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 11 FIPPGGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 68
          F+    LAPKTKNIVVAGGLT+FVFGVYFYTMRAVGG+DELQVAID+FEA+K   ++
Sbjct: 4  FLSFNNLAPKTKNIVVAGGLTSFVFGVYFYTMRAVGGTDELQVAIDKFEAEKGKSET 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g16260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU8_CUCSA	4.0e-18	92.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589280 PE=4 SV=1	[more]
W9RFF6_9ROSA	1.1e-15	81.48	Uncharacterized protein OS=Morus notabilis GN=L484_020386 PE=4 SV=1	[more]
A0A103XWT7_CYNCS	4.1e-15	84.62	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_023447 PE=4 ...	[more]
A0A0B0MM85_GOSAR	1.6e-14	87.50	Cytochrome oxidase assembly 3, mitochondrial OS=Gossypium arboreum GN=F383_20505...	[more]
A0A059B6S7_EUCGR	1.6e-14	85.71	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04449 PE=4 ...	[more]

BLAST of Cp4.1LG01g16260 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43780.1	1.5e-16	86.96	unknown protein	[more]

BLAST of Cp4.1LG01g16260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090456\|ref\|XP_008446026.1\|	4.4e-18	92.45	PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo]	[more]
gi\|778704559\|ref\|XP_011655556.1\|	5.7e-18	92.45	PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus]	[more]
gi\|703117409\|ref\|XP_010101371.1\|	1.6e-15	81.48	hypothetical protein L484_020386 [Morus notabilis]	[more]
gi\|976911683\|gb\|KVH98324.1\|	5.9e-15	84.62	hypothetical protein Ccrd_023447 [Cynara cardunculus var. scolymus]	[more]
gi\|1021025485\|gb\|KZM83273.1\|	7.7e-15	75.44	hypothetical protein DCAR_030842 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16260.1	Cp4.1LG01g16260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor
None	No IPR available	PANTHER	PTHR36744	FAMILY NOT NAMED	coord: 16..75 score: 2.2
None	No IPR available	PANTHER	PTHR36744:SF1	SUBFAMILY NOT NAMED	coord: 16..75 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16260	Cucsa.075820	Cucumber (Gy14) v1	cgycpeB0123
Cp4.1LG01g16260	Cla022952	Watermelon (97103) v1	cpewmB463
Cp4.1LG01g16260	Csa5G589280	Cucumber (Chinese Long) v2	cpecuB440
Cp4.1LG01g16260	MELO3C011854	Melon (DHL92) v3.5.1	cpemeB364
Cp4.1LG01g16260	ClCG11G013540	Watermelon (Charleston Gray)	cpewcgB364
Cp4.1LG01g16260	CSPI05G21300	Wild cucumber (PI 183967)	cpecpiB440
Cp4.1LG01g16260	Lsi04G006950	Bottle gourd (USVL1VR-Ls)	cpelsiB353
Cp4.1LG01g16260	MELO3C011854.2	Melon (DHL92) v3.6.1	cpemedB424
Cp4.1LG01g16260	CsaV3_5G030160	Cucumber (Chinese Long) v3	cpecucB0544
Cp4.1LG01g16260	Bhi07G001543	Wax gourd	cpewgoB0555
Cp4.1LG01g16260	CsGy5G020850	Cucumber (Gy14) v2	cgybcpeB649
Cp4.1LG01g16260	Carg24401	Silver-seed gourd	carcpeB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16260	Silver-seed gourd	carcpeB0971
Cp4.1LG01g16260	Cucurbita pepo (Zucchini)	cpecpeB033
Cp4.1LG01g16260	Cucurbita pepo (Zucchini)	cpecpeB406
Cp4.1LG01g16260	Cucurbita maxima (Rimu)	cmacpeB186
Cp4.1LG01g16260	Cucurbita maxima (Rimu)	cmacpeB431
Cp4.1LG01g16260	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16260	Cucurbita moschata (Rifu)	cmocpeB162
Cp4.1LG01g16260	Cucurbita moschata (Rifu)	cmocpeB393
Cp4.1LG01g16260	Cucurbita moschata (Rifu)	cmocpeB673