Carg24401 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24401
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome oxidase assembly protein
Location	Cucurbita_argyrosperma_scaffold_293 : 15934 .. 17088 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTGTATGAAGTTTATGCACATGAGTGTGATCATGATAAGAACCCAAACCTGGACCCTGTTTCATGTGGACATCAGCAGTATCCTATTTTTGTAGTGTCCAACCAGTAAGCAAGAGCAACAGTGAGAACCATCCTAGTTTGATCATGAGAAGAACTCAATACTAAAGGCTTCACAATGATCTACATCCAGGCCATTAACTTGACCTTTTAATGAACTACTGCCCCATCTGGATATCTCTTGATTTTAAATACCCGTTTACGCCTTGCAACTGTAGATGAAGAACTTAGTTGGCAATGCTGGATGTCACAAATTTCTCAGGAAGTTGTTTAAAATTATAGATGTACCATTCGAAGTGGAGTCCATTTATTCTGCCAGGGTTTAATGCTTCCAGACAATTTGTAACCATTCTGGATATTGAGGTGGACATGGCTACCCTTTCCTTCACTTAGCTGAGCTTTTAATACTCGGATACCATCTTAAGAAGCAGATATATTAATGGAAAGATCACTTTTTTTGAAATCTCGTGTACTCGTAATACGTAGCTGTGGGCTTACCAAGTGTTGCTTAATGGTCTAACAAACTAGAACTTGCTGAAATATTGCCAGCTAACTGTGTCTGCTACAACTAAACTGAACTGGATGAACAGCTACTCCAAACAAAAGCATTCTAAGTCATTTATATTTCAGTGGTTTTCTTTGAGATGTCTCCTAACATATTTTCATAGTCGCTTTGTCCCCCTTTTGTATAACTTGATTTAAGTGTAGAGTGAATTTTCCTGATTAGCTTCTCCCGACAAGCAATAGCCCTTGATTTTTAGTACTATCATTCATTATTTGTCTTTGCAAGACTCGTTCGTGTGAAAACCATTATATTGCCACTGGATGATAGTCTAATTGGTATAATATTGACATGCTTGCAGCGTTAAAAGCATAACAAAACATCCGTGTCTTTGCCTGCTAAATGGCTGGACTTTTGGGATTGAGGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGTGTAG

mRNA sequence

ATGCTGCTGTATGAAGTTTATGCACATGAGTGTGATCATGATAAGAACCCAAACCTGGACCCTGTTTCATGTGGACATCAGCAGTATCCTATTTTTGTAGTGTCCAACCAGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGTGTAG

Coding sequence (CDS)

ATGCTGCTGTATGAAGTTTATGCACATGAGTGTGATCATGATAAGAACCCAAACCTGGACCCTGTTTCATGTGGACATCAGCAGTATCCTATTTTTGTAGTGTCCAACCAGGGCCTTGCACCCAAGACAAAGAATATTGTTGTTGCTGGAGGTTTAACTGCCTTCGTGTTTGGGGTTTATTTCTACACAATGAGAGCTGTTGGAGGCTCCGATGAACTGCAAGTAGCCATAGACCAGTTTGAAGCGCAGAAAGACAACAAGGATTCGAACGTGTAG

Protein sequence

MLLYEVYAHECDHDKNPNLDPVSCGHQQYPIFVVSNQGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV

Homology

[Close]

BLAST of Carg24401 vs. NCBI nr
Match: XP_022956375.1 (uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 uncharacterized protein LOC111493381 [Cucurbita maxima] >XP_023522138.1 uncharacterized protein LOC111785987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 37 QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          +GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV
Sbjct: 8  RGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 62

[Close]

BLAST of Carg24401 vs. NCBI nr
Match: XP_016900171.1 (PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 38 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQK NK+SNV
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKESNV 62

[Close]

BLAST of Carg24401 vs. NCBI nr
Match: XP_011655556.1 (PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus] >KGN51660.1 hypothetical protein Csa_5G589280 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 38 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+SNV
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKESNV 62

[Close]

BLAST of Carg24401 vs. NCBI nr
Match: XP_022151963.1 (uncharacterized protein LOC111019802 [Momordica charantia] >XP_022151965.1 uncharacterized protein LOC111019802 [Momordica charantia] >XP_022151966.1 uncharacterized protein LOC111019802 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 37 QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 89
          + LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAIDQFEAQK NKD
Sbjct: 8  KSLAPKTKNVVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDQFEAQKSNKD 59

[Close]

BLAST of Carg24401 vs. NCBI nr
Match: XP_024024607.1 (uncharacterized protein LOC21403287 [Morus notabilis] >XP_024024608.1 uncharacterized protein LOC21403287 [Morus notabilis] >XP_024024609.1 uncharacterized protein LOC21403287 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 37 QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 90
          + LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQ+AID+FEAQK  KD+
Sbjct: 6  RSLAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQMAIDKFEAQKGKKDA 58

[Close]

BLAST of Carg24401 vs. TAIR10
Match: AT2G43780.1 (unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 39 LAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK 85
          L PK KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK
Sbjct: 10 LGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55

[Close]

BLAST of Carg24401 vs. TrEMBL
Match: tr|A0A1S4DW05|A0A1S4DW05_CUCME (uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 38 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQK NK+SNV
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKESNV 62

[Close]

BLAST of Carg24401 vs. TrEMBL
Match: tr|A0A0A0KPU8|A0A0A0KPU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 38 GLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+SNV
Sbjct: 9  GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKESNV 62

[Close]

BLAST of Carg24401 vs. TrEMBL
Match: tr|W9RFF6|W9RFF6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020386 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 37 QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 90
          + LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQ+AID+FEAQK  KD+
Sbjct: 6  RSLAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQMAIDKFEAQKGKKDA 58

[Close]

BLAST of Carg24401 vs. TrEMBL
Match: tr|A0A175YIA6|A0A175YIA6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030842 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 34 VSNQGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDSNV 92
          +S   LAPKTKNIVVAGGLT+FVFGVYFYTMRAVGG+DELQVAID+FEA+K   ++ V
Sbjct: 5  LSFNNLAPKTKNIVVAGGLTSFVFGVYFYTMRAVGGTDELQVAIDKFEAEKGKSETEV 62

[Close]

BLAST of Carg24401 vs. TrEMBL
Match: tr|A0A2P5C7W4|A0A2P5C7W4_9ROSA (Cytochrome oxidase assembly protein OS=Trema orientalis OX=63057 GN=TorRG33x02_294520 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 37 QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 90
          + LAPKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK  K++
Sbjct: 8  RSLAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEQQKTKKEA 60

The following BLAST results are available for this feature:

BLAST of Carg24401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956375.1	1.1e-20	98.18	uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 unchar...	[more]
XP_016900171.1	2.3e-18	92.59	PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo]	[more]
XP_011655556.1	3.1e-18	92.59	PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus] >KGN51660.1 hy...	[more]
XP_022151963.1	3.4e-17	90.38	uncharacterized protein LOC111019802 [Momordica charantia] >XP_022151965.1 uncha...	[more]
XP_024024607.1	1.4e-15	83.02	uncharacterized protein LOC21403287 [Morus notabilis] >XP_024024608.1 uncharacte...	[more]

BLAST of Carg24401 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43780.1	2.0e-16	86.96	unknown protein	[more]

BLAST of Carg24401 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24401 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DW05\|A0A1S4DW05_CUCME	1.5e-18	92.59	uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=...	[more]
tr\|A0A0A0KPU8\|A0A0A0KPU8_CUCSA	2.0e-18	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1	[more]
tr\|W9RFF6\|W9RFF6_9ROSA	9.4e-16	83.02	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020386 PE=4 SV=1	[more]
tr\|A0A175YIA6\|A0A175YIA6_DAUCA	3.6e-15	75.86	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030842 ...	[more]
tr\|A0A2P5C7W4\|A0A2P5C7W4_9ROSA	4.7e-15	81.13	Cytochrome oxidase assembly protein OS=Trema orientalis OX=63057 GN=TorRG33x02_2...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24401-RA	Carg24401-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	PANTHER	PTHR36744	FAMILY NOT NAMED	coord: 37..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24401	Cla022952	Watermelon (97103) v1	carwmB0131
Carg24401	Csa5G589280	Cucumber (Chinese Long) v2	carcuB0148
Carg24401	MELO3C011854	Melon (DHL92) v3.5.1	carmeB0139
Carg24401	ClCG11G013540	Watermelon (Charleston Gray)	carwcgB0131
Carg24401	CSPI05G21300	Wild cucumber (PI 183967)	carcpiB0153
Carg24401	Cucsa.075820	Cucumber (Gy14) v1	carcgyB0166
Carg24401	Lsi04G006950	Bottle gourd (USVL1VR-Ls)	carlsiB122
Carg24401	Cp4.1LG01g16260	Cucurbita pepo (Zucchini)	carcpeB0196
Carg24401	CsGy5G020850	Cucumber (Gy14) v2	carcgybB0146
Carg24401	MELO3C011854.2	Melon (DHL92) v3.6.1	carmedB0143
Carg24401	CsaV3_5G030160	Cucumber (Chinese Long) v3	carcucB0156

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24401	Silver-seed gourd	carcarB160
Carg24401	Cucurbita maxima (Rimu)	carcmaB0178
Carg24401	Cucurbita maxima (Rimu)	carcmaB0179
Carg24401	Cucurbita moschata (Rifu)	carcmoB0186
Carg24401	Cucurbita moschata (Rifu)	carcmoB0187
Carg24401	Cucurbita pepo (Zucchini)	carcpeB0195
Carg24401	Watermelon (97103) v2	carwmbB0141