CSPI05G21300 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G21300
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cytochrome oxidase assembly 3, mitochondrial
Location	Chr5 : 22100242 .. 22100430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

mRNA sequence

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

Coding sequence (CDS)

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

Homology

[Close]

BLAST of CSPI05G21300 vs. TrEMBL
Match: A0A0A0KPU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589280 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES
Sbjct: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. TrEMBL
Match: R0HF55_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024467mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.4e-18
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAG  GFS LGPK+KN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK+ +  
Sbjct: 1  MAGFPGFSHLGPKSKNVVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQKQVETD 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of CSPI05G21300 vs. TrEMBL
Match: G7KSN0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g091060 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 8.4e-18
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKE 60
          MAG+LG+SGL PKTKN +VAGGLT FVFG YFYTMRAVGG+DELQVAID+FE+ K  KE
Sbjct: 1  MAGVLGYSGLAPKTKNFIVAGGLTTFVFGAYFYTMRAVGGTDELQVAIDKFEADKSTKE 59

[Close]

BLAST of CSPI05G21300 vs. TrEMBL
Match: A0A061EJ76_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019853 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNK 59
          MAGLLG++ L PKTKN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE  K+ +
Sbjct: 1  MAGLLGYNSLAPKTKNLVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEEHKKQE 58

[Close]

BLAST of CSPI05G21300 vs. TrEMBL
Match: A0A022R8T3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017543mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.2e-17
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKE 60
          M+GL+GF  L PKTKN+VVAGGLT FVFGVYFYTMRAVGG+DELQ+AID+FE QK   E
Sbjct: 1  MSGLIGFRSLAPKTKNLVVAGGLTGFVFGVYFYTMRAVGGTDELQIAIDKFEDQKHTTE 59

[Close]

BLAST of CSPI05G21300 vs. TAIR10
Match: AT2G43780.1 (AT2G43780.1 unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-20
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKR 57
          MAG  GFS LGPK KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK+
Sbjct: 1  MAGFPGFSYLGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQKQ 56

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: gi|778704559|ref|XP_011655556.1| (PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES
Sbjct: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: gi|659090456|ref|XP_008446026.1| (PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG+SGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FE+QK NKES
Sbjct: 1  MAGLLGYSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: gi|565475468|ref|XP_006295375.1| (hypothetical protein CARUB_v10024467mg [Capsella rubella])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAG  GFS LGPK+KN+VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK+ +  
Sbjct: 1  MAGFPGFSHLGPKSKNVVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQKQVETD 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: gi|922340201|ref|XP_003625112.2| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKE 60
          MAG+LG+SGL PKTKN +VAGGLT FVFG YFYTMRAVGG+DELQVAID+FE+ K  KE
Sbjct: 1  MAGVLGYSGLAPKTKNFIVAGGLTTFVFGAYFYTMRAVGGTDELQVAIDKFEADKSTKE 59

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: gi|1009112792|ref|XP_015870175.1| (PREDICTED: uncharacterized protein LOC107407403 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAG+ G+S L PKTKN+VVAGGLTAFVFGVY+YTMRAVGG+DELQ+AID+FE QK  KE+
Sbjct: 1  MAGISGYSRLAPKTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQIAIDKFEEQKTKKET 60

The following BLAST results are available for this feature:

BLAST of CSPI05G21300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G21300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU8_CUCSA	1.9e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589280 PE=4 SV=1	[more]
R0HF55_9BRAS	8.4e-18	78.69	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024467mg PE=4 SV=1	[more]
G7KSN0_MEDTR	8.4e-18	77.97	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g091060 PE=2 SV=2	[more]
A0A061EJ76_THECC	1.1e-17	79.31	Uncharacterized protein OS=Theobroma cacao GN=TCM_019853 PE=4 SV=1	[more]
A0A022R8T3_ERYGU	3.2e-17	76.27	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017543mg PE=4 SV=1	[more]

BLAST of CSPI05G21300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43780.1	6.1e-20	83.93	unknown protein	[more]

BLAST of CSPI05G21300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704559\|ref\|XP_011655556.1\|	2.7e-25	100.00	PREDICTED: uncharacterized protein LOC105435556 [Cucumis sativus]	[more]
gi\|659090456\|ref\|XP_008446026.1\|	1.9e-23	93.55	PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo]	[more]
gi\|565475468\|ref\|XP_006295375.1\|	1.2e-17	78.69	hypothetical protein CARUB_v10024467mg [Capsella rubella]	[more]
gi\|922340201\|ref\|XP_003625112.2\|	1.2e-17	77.97	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|1009112792\|ref\|XP_015870175.1\|	1.6e-17	76.67	PREDICTED: uncharacterized protein LOC107407403 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G21300.1	CSPI05G21300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 41..62 scor
None	No IPR available	PANTHER	PTHR36744	FAMILY NOT NAMED	coord: 1..61 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G21300	Cla022952	Watermelon (97103) v1	cpiwmB444
CSPI05G21300	Csa5G589280	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G21300	MELO3C011854	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G21300	ClCG11G013540	Watermelon (Charleston Gray)	cpiwcgB369
CSPI05G21300	Lsi04G006950	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G21300	MELO3C011854.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G21300	CsaV3_5G030160	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G21300	Bhi07G001543	Wax gourd	cpiwgoB516
CSPI05G21300	Cucsa.075820	Cucumber (Gy14) v1	cgycpiB076
CSPI05G21300	Cp4.1LG01g16260	Cucurbita pepo (Zucchini)	cpecpiB440
CSPI05G21300	CsGy5G020850	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G21300	Carg24401	Silver-seed gourd	carcpiB0153

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G21300	Silver-seed gourd	carcpiB0727
CSPI05G21300	Watermelon (97103) v2	cpiwmbB373
CSPI05G21300	Cucurbita maxima (Rimu)	cmacpiB190
CSPI05G21300	Cucurbita maxima (Rimu)	cmacpiB419
CSPI05G21300	Cucurbita maxima (Rimu)	cmacpiB758
CSPI05G21300	Cucurbita moschata (Rifu)	cmocpiB176
CSPI05G21300	Cucurbita moschata (Rifu)	cmocpiB412
CSPI05G21300	Cucurbita moschata (Rifu)	cmocpiB748
CSPI05G21300	Cucurbita pepo (Zucchini)	cpecpiB042
CSPI05G21300	Cucurbita pepo (Zucchini)	cpecpiB837
CSPI05G21300	Cucumber (Gy14) v2	cgybcpiB233