Cp4.1LG01g13630 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g13630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibulose bisphosphate carboxylase (small chain) family protein
LocationCp4.1LG01 : 8064021 .. 8064869 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTATCACAATTTAAGCAACAACTCATTCCCCCTCATTAATTAGTTAATTAATTAGGGCTTATTATTAGTATTAATCTGTTTATTTTTTGTTGCTGTTAAAACAAAAACAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGGTCAGTAATGAATAAATGATTCAATGATTCAATTGAAAAGAAGAATGGAATTGCTGAATTGTGTTGTTGGTTTGAATGATGGTGCTTTGCAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAAGTCCATCCCCACTCCACGCTTTTGCTTCAGTTGGGTTTCATCAAATTTCTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAAGTCCATCCCCACTCCACGCTTTTGCTTCAGTTGGGTTTCATCAAATTTCTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAA

Protein sequence

MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY
BLAST of Cp4.1LG01g13630 vs. Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.3e-84
Identity = 149/179 (83.24%), Postives = 164/179 (91.62%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASN  +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

BLAST of Cp4.1LG01g13630 vs. Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 2.9e-80
Identity = 142/181 (78.45%), Postives = 161/181 (88.95%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASS+VSSAAVA+VNR +PAQASMVAPF GLKS A FPVT+KNNDIT++A+NG RV+CM+
Sbjct: 1   MASSMVSSAAVATVNR-TPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQ 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLG KKFETLSYLP L+ E L+KE+ YLL +GWVPC+EFE   GFVYRE+  +PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDP+QV AE+EEAKK YP AFIR+IGFDNVRQVQCISFI YKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 180

BLAST of Cp4.1LG01g13630 vs. Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-79
Identity = 141/183 (77.05%), Postives = 161/183 (87.98%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN--DITTLASNGSRVKC 60
           MASSIVSSAAVA+  R++ AQASMVAPF GLKS A FPVT+KNN  DIT+LASNG RV+C
Sbjct: 1   MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPP+ +KK+ETLSYLPDL+ EQLLKE+ YLL++GWVPC+EFE E GFVYRENH+SPG
Sbjct: 61  MQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD  QV AE++EAKK YP A+IR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
             Y
Sbjct: 181 EGY 181

BLAST of Cp4.1LG01g13630 vs. Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.2e-79
Identity = 139/183 (75.96%), Postives = 159/183 (86.89%), Query Frame = 1

Query: 1   MASSIVSSAAVASVN--RASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKC 60
           MASS++SS  VA+V+  R +PAQA MVAPF GLKS++ FPVTRK+NDIT++ASNG RV+C
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP L+ E L KE+ YLLR  WVPC+EFELE GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD +QV  E+EEAKK YP +FIR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
           A +
Sbjct: 181 AGF 183

BLAST of Cp4.1LG01g13630 vs. Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 138/183 (75.41%), Postives = 158/183 (86.34%), Query Frame = 1

Query: 1   MASSIVSSAAVASVN--RASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKC 60
           MASS++SS  VA+V+  R +PAQA MVAPF GLKS++  PVTRK+NDIT++ASNG RV+C
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP L+ E L KE+ YLLR  WVPC+EFELE GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD +QV  E+EEAKK YP +FIR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
           A +
Sbjct: 181 AGF 183

BLAST of Cp4.1LG01g13630 vs. TrEMBL
Match: A0A0A0KR46_CUCSA (Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=Csa_5G609710 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.9e-83
Identity = 151/182 (82.97%), Postives = 166/182 (91.21%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 SY 182
            +
Sbjct: 181 RF 182

BLAST of Cp4.1LG01g13630 vs. TrEMBL
Match: H8WR56_CUCSA (Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=ruBisCO PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.6e-83
Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSA VASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 SY 182
            +
Sbjct: 181 RF 182

BLAST of Cp4.1LG01g13630 vs. TrEMBL
Match: I7DCG5_ARAEL (Ribulose bisphosphate carboxylase small chain OS=Aralia elata PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.6e-83
Identity = 147/178 (82.58%), Postives = 163/178 (91.57%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASS++SSA+VA+V+RA+PAQASMVAPF GLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLP LT E+L KE+ YLLRSGWVPC+EFELE G+VYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           DGRYWTMWKLPMFGCTD +QV  E+EE KKEYPNAFIR+IGFDNVRQVQCISFI +KP
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178

BLAST of Cp4.1LG01g13630 vs. TrEMBL
Match: Q3LFQ4_PANGI (Ribulose bisphosphate carboxylase small chain OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.8e-82
Identity = 147/180 (81.67%), Postives = 161/180 (89.44%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASS++SSA VA+V+RA PAQASMVAPF GLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLP LT EQL KE+ YLLRSGWVPC+EFELE GFVYRE+H SPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTD +QV  E+EE KKEYPNA+IR+IGFDNVRQVQCISFI +KP S
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKPPS 180

BLAST of Cp4.1LG01g13630 vs. TrEMBL
Match: A0A059A414_EUCGR (Ribulose bisphosphate carboxylase small chain OS=Eucalyptus grandis GN=EUGRSUZ_K02223 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.5e-80
Identity = 144/181 (79.56%), Postives = 161/181 (88.95%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVA+VNRASPAQASMVAPF GLKS + FPVTRK+ DIT+LASNG RV+CM+
Sbjct: 1   MASSIVSSAAVAAVNRASPAQASMVAPFTGLKSASAFPVTRKSADITSLASNGGRVQCMQ 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPP+G KKFETLSYLP L+ E+LLKEI YLLR  WVPC+EFELEKGFVYR+NH+SPGYY
Sbjct: 61  VWPPIGKKKFETLSYLPPLSREELLKEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDP QV  E++EA K YPNAF+R+IGFDN RQVQCISFI YKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPLQVLKELDEAIKTYPNAFVRIIGFDNKRQVQCISFIAYKPPG 180

Query: 181 Y 182
           +
Sbjct: 181 F 181

BLAST of Cp4.1LG01g13630 vs. TAIR10
Match: AT5G38430.1 (AT5G38430.1 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 283.9 bits (725), Expect = 7.0e-77
Identity = 135/182 (74.18%), Postives = 154/182 (84.62%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSAAV +    SPAQA+MVAPF GLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDLT  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

BLAST of Cp4.1LG01g13630 vs. TAIR10
Match: AT1G67090.1 (AT1G67090.1 ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 281.6 bits (719), Expect = 3.5e-76
Identity = 133/182 (73.08%), Postives = 153/182 (84.07%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSA +     ASPAQA+MVAPF GLKS+A FP TRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           +VWPP+G KKFETLSYLPDLT  +L KE+ YL+R+ W+PC+EFELE GFVYRE+  SPGY
Sbjct: 61  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYPNAFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

BLAST of Cp4.1LG01g13630 vs. TAIR10
Match: AT5G38420.1 (AT5G38420.1 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 280.0 bits (715), Expect = 1.0e-75
Identity = 133/182 (73.08%), Postives = 152/182 (83.52%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS+ SS AV +    SPAQA+MVAPF GLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

BLAST of Cp4.1LG01g13630 vs. TAIR10
Match: AT5G38410.3 (AT5G38410.3 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 275.4 bits (703), Expect = 2.5e-74
Identity = 134/187 (71.66%), Postives = 154/187 (82.35%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASS++SSAAV +    SPAQA+MVAPF GLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELE-----KGFVYRENH 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE      GFVYRE+ 
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 RSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFI 180
            +PGYYDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

Query: 181 VYKPASY 182
            YKP S+
Sbjct: 181 AYKPPSF 183

BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: gi|659091543|ref|XP_008446602.1| (PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis melo])

HSP 1 Score: 321.2 bits (822), Expect = 1.1e-84
Identity = 152/181 (83.98%), Postives = 164/181 (90.61%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS A FPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPD++ EQL KE+ YLLR GW+PCIEF++  GFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+A+IRVIGFDNVRQVQCISFI YKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180

Query: 181 Y 182
           +
Sbjct: 181 F 181

BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: gi|449434620|ref|XP_004135094.1| (PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-83
Identity = 151/182 (82.97%), Postives = 166/182 (91.21%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 SY 182
            +
Sbjct: 181 RF 182

BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: gi|379131260|emb|CCF55356.1| (ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 8.1e-83
Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSA VASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 SY 182
            +
Sbjct: 181 RF 182

BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: gi|397789258|gb|AFO67218.1| (putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia elata])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 147/178 (82.58%), Postives = 163/178 (91.57%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASS++SSA+VA+V+RA+PAQASMVAPF GLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLP LT E+L KE+ YLLRSGWVPC+EFELE G+VYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           DGRYWTMWKLPMFGCTD +QV  E+EE KKEYPNAFIR+IGFDNVRQVQCISFI +KP
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178

BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: gi|132138|sp|P08474.1|RBS_CUCSA (RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 5.2e-82
Identity = 149/179 (83.24%), Postives = 164/179 (91.62%), Query Frame = 1

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASN  +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RBS_CUCSA3.3e-8483.24Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus ... [more]
RBS1_MESCR2.9e-8078.45Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthem... [more]
RBS3_SOLTU2.4e-7977.05Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tubero... [more]
RBS_PYRPY3.2e-7975.96Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia ... [more]
RBS_MALSP2.1e-7875.41Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBC... [more]
Match NameE-valueIdentityDescription
A0A0A0KR46_CUCSA1.9e-8382.97Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=Csa_5G609710... [more]
H8WR56_CUCSA5.6e-8382.42Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=ruBisCO PE=2... [more]
I7DCG5_ARAEL9.6e-8382.58Ribulose bisphosphate carboxylase small chain OS=Aralia elata PE=2 SV=1[more]
Q3LFQ4_PANGI4.8e-8281.67Ribulose bisphosphate carboxylase small chain OS=Panax ginseng PE=2 SV=1[more]
A0A059A414_EUCGR1.5e-8079.56Ribulose bisphosphate carboxylase small chain OS=Eucalyptus grandis GN=EUGRSUZ_K... [more]
Match NameE-valueIdentityDescription
AT5G38430.17.0e-7774.18 Ribulose bisphosphate carboxylase (small chain) family protein[more]
AT1G67090.13.5e-7673.08 ribulose bisphosphate carboxylase small chain 1A[more]
AT5G38420.11.0e-7573.08 Ribulose bisphosphate carboxylase (small chain) family protein[more]
AT5G38410.32.5e-7471.66 Ribulose bisphosphate carboxylase (small chain) family protein[more]
Match NameE-valueIdentityDescription
gi|659091543|ref|XP_008446602.1|1.1e-8483.98PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis... [more]
gi|449434620|ref|XP_004135094.1|2.8e-8382.97PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis... [more]
gi|379131260|emb|CCF55356.1|8.1e-8382.42ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus][more]
gi|397789258|gb|AFO67218.1|1.4e-8282.58putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia e... [more]
gi|132138|sp|P08474.1|RBS_CUCSA5.2e-8283.24RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Shor... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024681RuBisCO_sc
IPR024680RuBisCO_ssu_N
IPR000894RuBisCO_sc_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015977 carbon fixation
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009536 plastid
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13630.1Cp4.1LG01g13630.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000894Ribulose bisphosphate carboxylase small chain, domainGENE3DG3DSA:3.30.190.10coord: 59..179
score: 3.5
IPR000894Ribulose bisphosphate carboxylase small chain, domainPFAMPF00101RuBisCO_smallcoord: 70..178
score: 5.0
IPR000894Ribulose bisphosphate carboxylase small chain, domainSMARTSM00961RuBisCO_small_2_acoord: 69..178
score: 1.1
IPR000894Ribulose bisphosphate carboxylase small chain, domainunknownSSF55239RuBisCO, small subunitcoord: 59..180
score: 1.57
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..44
score: 1.8
IPR024681Ribulose bisphosphate carboxylase, small chainPRINTSPR00152RUBISCOSMALLcoord: 118..147
score: 4.5E-73coord: 152..178
score: 4.5E-73coord: 21..38
score: 4.5E-73coord: 68..94
score: 4.5E-73coord: 96..111
score: 4.5E-73coord: 47..65
score: 4.5
NoneNo IPR availablePANTHERPTHR31262FAMILY NOT NAMEDcoord: 2..181
score: 5.0E

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g13630Cp4.1LG09g03060Cucurbita pepo (Zucchini)cpecpeB040