CmoCh18G010270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G010270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibulose bisphosphate carboxylase small chain (4.1.1.39)
LocationCmo_Chr18 : 11064863 .. 11066143 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTATTAAACCATTCAATTCGTTTGTTAAAATTATGGGTTGTTCTTAATTTTTTGTGGGTTTGTTTGTAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTTGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGGTTAGTCATATTAAGAATCACGACTCCCCACAATGGTATGCTATATAGAAAATCCCCCCTCGAACAAAGTATACCATAAAGCCTCTTCTGAGGCCTATTAAGCTCTCGAACAGCCTCCTCTTAATTGAGGCTAGACTACTTTCTCACGACCCTTTACACCATTTGTTCGACATTTGATGATTCTATTAACATGGTTAAATTAAAAGCATAATTCTGATACCAGACATGACATTGGTGGCTTGGTTTTTGGCTAACAAGAATTGAGATGTATTACTTGCTTATAAACTCACGATCATATCTGAACTGGGTTTGGATAATTTTGCAGAAGGGATTTGTGTACCGTGAGAACCACAGGTCGCCGGGATACTACGACGGACGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACAGACCCAGCTCAGGTGGCGGCTGAGATCGAGGAGGCCAAGAAGGAGTACCCCAACGCATTCATCAGGGTCATTGGGTTTGACAATGTCCGCCAAGTGCAGTGCATCAGTTTCATTGTCTACAAGCCTGCATCCTACTAAGTTTCTTCATTCCCGCCCATCGCCGCCTTCACTTGGGTTTCAACAAATTTATTTCCTTTTTAAACCTTAATTTTCTCTTTACATTTTGTTGTGTTCATCATCAAGCTATGTTTATTTCCCCGACTTTCCAACTCGATTCGGAATAAATGATGCTTTGATTTGTTGTTAAGAACTCAGTATCAATCTTTCTATCTTTATGCATCGCCAAATTCTATGGAATTCTATCGAAATCGCGATGAAAATTAAGTAATTTTTTTAGATATGATGGAGAGATTGATTGTCGTTTATAATAAGAACGTATATATTTTCGAGTAAATTAATGTTTTGATTGAAGGGTAC

mRNA sequence

ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTTGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGGTTAGTCATATTAAGAATCACGACTCCCCACAATGAAGGGATTTGTGTACCGTGAGAACCACAGGTCGCCGGGATACTACGACGGACGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACAGACCCAGCTCAGGTGGCGGCTGAGATCGAGGAGGCCAAGAAGGAGTACCCCAACGCATTCATCAGGGTCATTGGGTTTGACAATGTCCGCCAAGTGCAGTGCATCAGTTTCATTGTCTACAAGCCTGCATCCTACTAAGTTTCTTCATTCCCGCCCATCGCCGCCTTCACTTGGGTTTCAACAAATTTATTTCCTTTTTAAACCTTAATTTTCTCTTTACATTTTGTTGTGTTCATCATCAAGCTATGTTTATTTCCCCGACTTTCCAACTCGATTCGGAATAAATGATGCTTTGATTTGTTGTTAAGAACTCAGTATCAATCTTTCTATCTTTATGCATCGCCAAATTCTATGGAATTCTATCGAAATCGCGATGAAAATTAAGTAATTTTTTTAGATATGATGGAGAGATTGATTGTCGTTTATAATAAGAACGTATATATTTTCGAGTAAATTAATGTTTTGATTGAAGGGTAC

Coding sequence (CDS)

ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTTGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGGTTAGTCATATTAAGAATCACGACTCCCCACAATGA
Homology
[Close]
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+AAVASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASN  +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 118

[Close]
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-38
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1 

Query: 7   SAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCMKVWPPL 66
           S+AAV +VNRAS AQA++VAP+TGLKS+AGFPVT+K NNDIT++ASNG RV CM+VWPP+
Sbjct: 5   SSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPV 64

Query: 67  GLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           G KKFETLSYLP LT EQL KE+ YL+R GW+PC+EFELE   +  +NH SP
Sbjct: 65  GKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSP 116

[Close]
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-37
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 1 

Query: 7   SAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMKVWPPLG 66
           S+AAV ++NRA P QA++  P+TGLKS+AGFPVT+KNNDIT++ SNGSRV CM+VWPP+G
Sbjct: 5   SSAAVTTINRA-PVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVG 64

Query: 67  LKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVS--HIKNHDSP 116
            KKFETLSYLP LT EQLLKE+ YLLR GWVPC+EFELE    H + + SP
Sbjct: 65  KKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSP 114

[Close]
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-37
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+A +A+VN +SPAQA+MVAP+TGLKS + FPVTRK NNDIT+LASNG RV+CM
Sbjct: 1   MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELE 106
           +VWPPLG KKFETLSYLPDLT  QL KE+ YLLRS W+PC+EFELE
Sbjct: 61  QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELE 106

[Close]
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-37
Identity = 80/118 (67.80%), Postives = 98/118 (83.05%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+A VA+V+RA+PAQA+MVAP+TGLKSTA FP TRK NNDIT+LASNG RV+CM
Sbjct: 1   MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLP L+ E L K+I YL+  GW+PC+EFELE   +  +N+ SP
Sbjct: 61  KVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSP 118

[Close]
BLAST of CmoCh18G010270 vs. TrEMBL
Match: I7DCG5_ARAEL (Ribulose bisphosphate carboxylase small chain OS=Aralia elata PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-40
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS V S+A+VA+V+RA+PAQASMVAP+TGLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           VWPPLGLKKFETLSYLP LT+E+L KE+ YLLRSGWVPC+EFELE   +  +NH SP
Sbjct: 61  VWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSP 117

[Close]
BLAST of CmoCh18G010270 vs. TrEMBL
Match: Q3LFQ4_PANGI (Ribulose bisphosphate carboxylase small chain OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.4e-40
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS V S+A VA+V+RA PAQASMVAP+TGLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           VWPPLGLKKFETLSYLP LT EQL KE+ YLLRSGWVPC+EFELE   +  ++H SP
Sbjct: 61  VWPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSP 117

[Close]
BLAST of CmoCh18G010270 vs. TrEMBL
Match: A0A0A0KR46_CUCSA (Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=Csa_5G609710 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.4e-40
Identity = 86/118 (72.88%), Postives = 103/118 (87.29%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+AAVASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 118

[Close]
BLAST of CmoCh18G010270 vs. TrEMBL
Match: H8WR56_CUCSA (Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=ruBisCO PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+A VASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 118

[Close]
BLAST of CmoCh18G010270 vs. TrEMBL
Match: A1BQG9_CUCSA (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.1e-38
Identity = 81/109 (74.31%), Postives = 96/109 (88.07%), Query Frame = 1 

Query: 10  AVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCMKVWPPLGLK 69
           AVASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASNG +V+CMKVWPPLGL+
Sbjct: 1   AVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCMKVWPPLGLR 60

Query: 70  KFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 109

[Close]
BLAST of CmoCh18G010270 vs. TAIR10
Match: AT5G38410.3 (AT5G38410.3 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 146.7 bits (369), Expect = 8.6e-36
Identity = 75/112 (66.96%), Postives = 92/112 (82.14%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+AAV +    SPAQA+MVAP+TGLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHIKN 112
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELEV + K+
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKH 108

[Close]
BLAST of CmoCh18G010270 vs. TAIR10
Match: AT5G38430.1 (AT5G38430.1 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-35
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+AAV +    SPAQA+MVAP+TGLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELE 106
           KVWPP+G KKFETLSYLPDLT  +L KE+ YLLR+ W+PC+EFELE
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELE 102

[Close]
BLAST of CmoCh18G010270 vs. TAIR10
Match: AT5G38420.1 (AT5G38420.1 Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-34
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+ AV +    SPAQA+MVAP+TGLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELE 106
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELE 102

[Close]
BLAST of CmoCh18G010270 vs. TAIR10
Match: AT1G67090.1 (AT1G67090.1 ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-33
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 2   ASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCMK 61
           +S++SSA  VAS     PAQA+MVAP+ GLKS+A FP TRK NNDIT++ SNG RV CM+
Sbjct: 3   SSMLSSATMVAS-----PAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ 62

Query: 62  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELE 106
           VWPP+G KKFETLSYLPDLT  +L KE+ YL+R+ W+PC+EFELE
Sbjct: 63  VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELE 102

[Close]
BLAST of CmoCh18G010270 vs. NCBI nr
Match: gi|659091543|ref|XP_008446602.1| (PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 88/117 (75.21%), Postives = 101/117 (86.32%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVASVN ASPAQASMVAP+TGLKS A FPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           VWPPLGLKKFETLSYLPD+++EQL KE+ YLLR GW+PCIEF++    +  +NH SP
Sbjct: 61  VWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSP 117

[Close]
BLAST of CmoCh18G010270 vs. NCBI nr
Match: gi|397789258|gb|AFO67218.1| (putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia elata])

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-40
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS V S+A+VA+V+RA+PAQASMVAP+TGLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           VWPPLGLKKFETLSYLP LT+E+L KE+ YLLRSGWVPC+EFELE   +  +NH SP
Sbjct: 61  VWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSP 117

[Close]
BLAST of CmoCh18G010270 vs. NCBI nr
Match: gi|77157637|dbj|BAE46384.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Panax ginseng])

HSP 1 Score: 171.4 bits (433), Expect = 9.3e-40
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS V S+A VA+V+RA PAQASMVAP+TGLKSTA FPVTRK NDIT+L SNG RV+CMK
Sbjct: 1   MASSVISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           VWPPLGLKKFETLSYLP LT EQL KE+ YLLRSGWVPC+EFELE   +  ++H SP
Sbjct: 61  VWPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSP 117

[Close]
BLAST of CmoCh18G010270 vs. NCBI nr
Match: gi|449434620|ref|XP_004135094.1| (PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 9.3e-40
Identity = 86/118 (72.88%), Postives = 103/118 (87.29%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+AAVASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 118

[Close]
BLAST of CmoCh18G010270 vs. NCBI nr
Match: gi|379131260|emb|CCF55356.1| (ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 1 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+A VASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASNG +V+CM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEVSHI--KNHDSP 116
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++    +  +NH SP
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 118

The following BLAST results are available for this feature:
BLAST of CmoCh18G010270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBS_CUCSA2.9e-4172.03Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus ... [more]
RBS_MEDSA1.3e-3869.64Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa ... [more]
RBS_TRIRP1.9e-3768.47Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens... [more]
RBS_GOSHI3.3e-3773.58Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsut... [more]
RBS_FAGCR3.3e-3767.80Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN... [more]
BLAST of CmoCh18G010270 vs. TrEMBL
Match NameE-valueIdentityDescription
I7DCG5_ARAEL1.7e-4075.21Ribulose bisphosphate carboxylase small chain OS=Aralia elata PE=2 SV=1[more]
Q3LFQ4_PANGI6.4e-4075.21Ribulose bisphosphate carboxylase small chain OS=Panax ginseng PE=2 SV=1[more]
A0A0A0KR46_CUCSA6.4e-4072.88Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=Csa_5G609710... [more]
H8WR56_CUCSA1.9e-3972.03Ribulose bisphosphate carboxylase small chain OS=Cucumis sativus GN=ruBisCO PE=2... [more]
A1BQG9_CUCSA2.1e-3874.31Ribulose bisphosphate carboxylase small chain (Fragment) OS=Cucumis sativus PE=2... [more]
BLAST of CmoCh18G010270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G38410.38.6e-3666.96 Ribulose bisphosphate carboxylase (small chain) family protein[more]
AT5G38430.12.5e-3569.81 Ribulose bisphosphate carboxylase (small chain) family protein[more]
AT5G38420.12.1e-3467.92 Ribulose bisphosphate carboxylase (small chain) family protein[more]
AT1G67090.11.1e-3365.71 ribulose bisphosphate carboxylase small chain 1A[more]
BLAST of CmoCh18G010270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091543|ref|XP_008446602.1|1.7e-4175.21PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis... [more]
gi|397789258|gb|AFO67218.1|2.4e-4075.21putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia e... [more]
gi|77157637|dbj|BAE46384.1|9.3e-4075.21ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Panax ginseng][more]
gi|449434620|ref|XP_004135094.1|9.3e-4072.88PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis... [more]
gi|379131260|emb|CCF55356.1|2.7e-3972.03ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000894RuBisCO_sc_dom
IPR024680RuBisCO_ssu_N
IPR024681RuBisCO_sc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0008150 biological_process
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G010270.1CmoCh18G010270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000894Ribulose bisphosphate carboxylase small chain, domainGENE3DG3DSA:3.30.190.10coord: 59..106
score: 5.0
IPR000894Ribulose bisphosphate carboxylase small chain, domainPFAMPF00101RuBisCO_smallcoord: 70..105
score: 2.
IPR000894Ribulose bisphosphate carboxylase small chain, domainunknownSSF55239RuBisCO, small subunitcoord: 59..109
score: 2.22
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 3..44
score: 2.5
IPR024681Ribulose bisphosphate carboxylase, small chainPRINTSPR00152RUBISCOSMALLcoord: 47..65
score: 9.0E-39coord: 21..38
score: 9.0E-39coord: 68..94
score: 9.0E-39coord: 96..111
score: 9.0
NoneNo IPR availablePANTHERPTHR31262FAMILY NOT NAMEDcoord: 2..109
score: 2.3
NoneNo IPR availablePANTHERPTHR31262:SF4RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATEDcoord: 2..109
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G010270Cucsa.283540Cucumber (Gy14) v1cgycmoB0789
CmoCh18G010270CmaCh18G010180Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G010270CmaCh04G015060Cucurbita maxima (Rimu)cmacmoB706
CmoCh18G010270Cla020400Watermelon (97103) v1cmowmB365
CmoCh18G010270Csa5G609710Cucumber (Chinese Long) v2cmocuB406
CmoCh18G010270MELO3C012252Melon (DHL92) v3.5.1cmomeB344
CmoCh18G010270ClCG05G022680Watermelon (Charleston Gray)cmowcgB358
CmoCh18G010270CSPI05G25310Wild cucumber (PI 183967)cmocpiB411
CmoCh18G010270Lsi04G002500Bottle gourd (USVL1VR-Ls)cmolsiB364
CmoCh18G010270Cp4.1LG09g03060Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G010270Cp4.1LG01g13630Cucurbita pepo (Zucchini)cmocpeB392
CmoCh18G010270MELO3C012252.2Melon (DHL92) v3.6.1cmomedB395
CmoCh18G010270CsaV3_5G034360Cucumber (Chinese Long) v3cmocucB0487
CmoCh18G010270Cla97C05G104530Watermelon (97103) v2cmowmbB403
CmoCh18G010270Bhi07G001100Wax gourdcmowgoB0535
CmoCh18G010270CsGy5G024760Cucumber (Gy14) v2cgybcmoB603
CmoCh18G010270Carg21594Silver-seed gourdcarcmoB1395
CmoCh18G010270Carg01843Silver-seed gourdcarcmoB1135
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G010270CmoCh04G015760Cucurbita moschata (Rifu)cmocmoB336
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G010270Watermelon (97103) v2cmowmbB399
CmoCh18G010270Watermelon (97103) v2cmowmbB411
CmoCh18G010270Wax gourdcmowgoB0505
CmoCh18G010270Wax gourdcmowgoB0533
CmoCh18G010270Cucurbita moschata (Rifu)cmocmoB344
CmoCh18G010270Cucurbita moschata (Rifu)cmocmoB102
CmoCh18G010270Cucurbita moschata (Rifu)cmocmoB244
CmoCh18G010270Cucurbita moschata (Rifu)cmocmoB339
CmoCh18G010270Cucumber (Gy14) v1cgycmoB0589
CmoCh18G010270Cucurbita maxima (Rimu)cmacmoB137
CmoCh18G010270Cucurbita maxima (Rimu)cmacmoB293
CmoCh18G010270Cucurbita maxima (Rimu)cmacmoB708
CmoCh18G010270Cucurbita maxima (Rimu)cmacmoB714
CmoCh18G010270Wild cucumber (PI 183967)cmocpiB391
CmoCh18G010270Wild cucumber (PI 183967)cmocpiB394
CmoCh18G010270Cucumber (Chinese Long) v2cmocuB389
CmoCh18G010270Cucumber (Chinese Long) v2cmocuB395
CmoCh18G010270Melon (DHL92) v3.5.1cmomeB361
CmoCh18G010270Watermelon (Charleston Gray)cmowcgB364
CmoCh18G010270Watermelon (97103) v1cmowmB388
CmoCh18G010270Watermelon (97103) v1cmowmB396
CmoCh18G010270Cucurbita pepo (Zucchini)cmocpeB400
CmoCh18G010270Cucurbita pepo (Zucchini)cmocpeB383
CmoCh18G010270Cucurbita pepo (Zucchini)cmocpeB411
CmoCh18G010270Bottle gourd (USVL1VR-Ls)cmolsiB374
CmoCh18G010270Cucumber (Gy14) v2cgybcmoB091
CmoCh18G010270Melon (DHL92) v3.6.1cmomedB406
CmoCh18G010270Melon (DHL92) v3.6.1cmomedB412
CmoCh18G010270Silver-seed gourdcarcmoB0811
CmoCh18G010270Cucumber (Chinese Long) v3cmocucB0466
CmoCh18G010270Cucumber (Chinese Long) v3cmocucB0467