Cp4.1LG01g13130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g13130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 8420151 .. 8421364 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGGTGTGTATACTCAGTCATGTCTCTCTCCTTCTTCTACACTTTGTTCTTTGTTCTTCTCTCTGAGAATAATGGAGTTATTTGTGATCTTGCAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTTGTTTGAGAATGCTTTTGAAATAAGTTATAAAAGAACATTACGAACATAATCATAGAGCCGGTTTGGAATGACTTTTCTAATTCGTAAAACGATTTTTGAACTAAGTTTTTCATTGTTAATGTCCAACTGTTCTAAACCATCTGGGCATTGTTCTATCTGTGTTCTTTCTCTGCTGTTGAAGTTGTGATATACATCACTGATGATTTTACTGGAAACAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTATGCAATTTCAAAGAAAACCCAAAAGTATGCAGGTTCTTAAATAACTCATTCCTGTCATATCTGTAAATCTTGCCAGTTCTTTGACTAAAAACTGCTGCAACATTGCTTCCTTGAAGATGGAAAATTTGTGGGCTTGCCATTTTTGAGTAACAATACATTAAATAAATGTACTTTCTTTTTCACATTTTTGATACATATCTTCACTTTCAGATATTTTTCCTGCCATTTTTGTTCTCAAATCACTTCCTGAATATCATTTGTTTTGATTAGTTGGCCTTTTACTTTAGTCATTCGTTCATCGTGTTCGTCCCATCAATAAGCGGTGTAATAAGTACATTTTAATTATCGTTCATTATGTTGTCATATCAATAAGCGGTCAGAGTTTGTAGATTGAATTTCTGTCTAAAATGAGTACATGTCAATTATCGTTCATCGTGTTGGAAGTGAATATTTGGTAATATTTTTTAATGAATGCATTTGAGATATGGTATTAATTTAATCGTCATATTTACAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

mRNA sequence

ATATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

Coding sequence (CDS)

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

Protein sequence

MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVVEAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVHNMSRQRP
Homology
[Close]
BLAST of Cp4.1LG01g13130 vs. TrEMBL
Match: A0A0A0KWA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-36
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 1 

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQ TE  VHSP LVL RKFKMLEEA   
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEG-VHSP-LVLGRKFKMLEEAARV 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VEA GFQ +KQ+D  KENVSGQ  +  + NKGKGRKW  V DMSS+ FTMDYAH+KR
Sbjct: 61  DKKVEAQGFQVAKQKDNHKENVSGQEEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 128
           RRPVHNMS +RP
Sbjct: 121 RRPVHNMSLKRP 130

[Close]
BLAST of Cp4.1LG01g13130 vs. TrEMBL
Match: A0A061E9A5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011443 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1 

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           M L+++  + C S L L  P  S     QSS  Q     V      L RK +  EE    
Sbjct: 1   MELLVVITVLCFSFLALQTPCTSLQIQLQSSTEQGAAKGVQLSLPTLPRKLRFTEELVEF 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
           + +G Q S    + KE+VSG+AY++EE     ++G   +W    D+ S++FTMDY++++R
Sbjct: 61  KGNGAQHSISNTKQKEDVSGKAYQKEEARVHGSRGTRHEWVEGPDV-SQYFTMDYSNVRR 120

Query: 121 RRPVHNMS 124
           RRP+HN S
Sbjct: 121 RRPIHNKS 127

[Close]
BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: gi|778705657|ref|XP_004135427.2| (PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.8e-36
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 1 

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQ TE  VHSP LVL RKFKMLEEA   
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEG-VHSP-LVLGRKFKMLEEAARV 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VEA GFQ +KQ+D  KENVSGQ  +  + NKGKGRKW  V DMSS+ FTMDYAH+KR
Sbjct: 61  DKKVEAQGFQVAKQKDNHKENVSGQEEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 128
           RRPVHNMS +RP
Sbjct: 121 RRPVHNMSLKRP 130

[Close]
BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: gi|659091296|ref|XP_008446475.1| (PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 1 

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQ TEA VHSPRLVL RKFKML+EA   
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEA-VHSPRLVLGRKFKMLKEAARL 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VE  GFQ +KQ D  KENVSG+  K  + NK KGRK  NV DMSS+ FTMDYAH+KR
Sbjct: 61  DKRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 128
           RRPVHNMS  RP
Sbjct: 121 RRPVHNMSLNRP 131

[Close]
BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: gi|590698558|ref|XP_007045748.1| (Uncharacterized protein TCM_011443 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1 

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           M L+++  + C S L L  P  S     QSS  Q     V      L RK +  EE    
Sbjct: 1   MELLVVITVLCFSFLALQTPCTSLQIQLQSSTEQGAAKGVQLSLPTLPRKLRFTEELVEF 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
           + +G Q S    + KE+VSG+AY++EE     ++G   +W    D+ S++FTMDY++++R
Sbjct: 61  KGNGAQHSISNTKQKEDVSGKAYQKEEARVHGSRGTRHEWVEGPDV-SQYFTMDYSNVRR 120

Query: 121 RRPVHNMS 124
           RRP+HN S
Sbjct: 121 RRPIHNKS 127

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g13130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWA1_CUCSA4.7e-3671.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1[more]
A0A061E9A5_THECC2.7e-0735.94Uncharacterized protein OS=Theobroma cacao GN=TCM_011443 PE=4 SV=1[more]
BLAST of Cp4.1LG01g13130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705657|ref|XP_004135427.2|6.8e-3671.21PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus][more]
gi|659091296|ref|XP_008446475.1|2.0e-3571.21PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo][more]
gi|590698558|ref|XP_007045748.1|3.9e-0735.94Uncharacterized protein TCM_011443 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13130.1Cp4.1LG01g13130.1mRNA