CSPI05G24470 (gene) Wild cucumber (PI 183967)

NameCSPI05G24470
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 24084889 .. 24086250 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCCTGCAAGGTGTGTGTGCTTGTCTCTCCTCCTCCTTTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTTTTCTTCTCTCTCTGGGAATAATGAAGTATTTGTGATCTTGCAGCAACTGAAGGTGTGCATTCTCCTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTATGTTTGAGAGTGCTTTTAAAATAAGTCATTTTGACATAAATTACTTTGAGCGAACTGTTCAAGTACCTTAGCAAAAAAAAAGTGTTCAATATTAAATCAACCTTTGTTTTTGTTTTCATTCTCTTAACGGTGGTTTTAATGTTTCCTTGACAATCATTCTTCCTCAAAATGCTCTTTCATTTCAAGCATTGTCTAGTCAAATTGACCCTGGTTTTGATCAAGTTACAACAATTACTTTAAGCCATATCAAAAACATTCACAAAACATAGTCATAATCCTGTTTGAAATGACTTTATATGTACTTCAAATTCAAAAGTCATTTCAAACGGGGGCCGACCATGATAATATCTGTCTTCTCTTGCTGCTGTTGAAGTTGTGATTACTAATGATTTTCCTGGAAACAGGTTGAAGCTCAAGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTGATTCACGATTACTATATTTTTTTTACAAAAAAAAATCCAAAAATATGCAAGTTTCTTTAAATAAGTCCTCCCCGTCATGTCCACAATCTTGCCAGATCTTTCACTAAAAACTGCAACAATATTGCTTCCTAGAATATGGAAAATTTGAGGCATAGCCATATTTTCAGTAACACCACATTGATTAAAGAAAATAAGTACTCTATTTCACATTTTAGATACATTTCTGCACTCTCAAACACTGTCCCTGCCATTTAATTCATTCCATTTTAGTTCATCTACTGTCCATTTAAAATCAATTCCCCATCAATCCCTTCCCCTTAATAGTTAATATCATTTGTTTAAATCAGTTGAAGGGTTTTCAAAGTTATGCCATTCATCTCATTTCCTCACCAAACTAACACAACTCAATTGGTTTAGATAGAGAGATTTGTAATTAACGTAATTGCAACATTTACAGGTCAGGAGGAACAAGGAACGAAGTTAAAGAAAGGAAAGGGGAGAAAGTGGGTGAAAGTGGCCGACATGTCGTCGCAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCTGTCCACAACATGTCGCTCAAGCGTCCTTGA

mRNA sequence

ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCCTGCAAGCAACTGAAGGTGTGCATTCTCCTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTTGAAGCTCAAGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTCAGGAGGAACAAGGAACGAAGTTAAAGAAAGGAAAGGGGAGAAAGTGGGTGAAAGTGGCCGACATGTCGTCGCAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCTGTCCACAACATGTCGCTCAAGCGTCCTTGA

Coding sequence (CDS)

ATGGGTTTGATAGTCATGGCCATACTTTGCTGTGTTTCTATCTTGGTTCTTTTGATACCTTCTGCTTCCTCACATGCTCTGGATCAGTCTTCTCCCCTGCAAGCAACTGAAGGTGTGCATTCTCCTCTTGTTTTAGGAAGGAAGTTCAAAATGTTAGAAGAAGCTGCAAGAGTGGATAAGAAGGTTGAAGCTCAAGGATTCCAAGTTGCCAAACAAAAAGATAACCACAAGGAAAATGTTTCAGGTCAGGAGGAACAAGGAACGAAGTTAAAGAAAGGAAAGGGGAGAAAGTGGGTGAAAGTGGCCGACATGTCGTCGCAGATTTTCACAATGGACTATGCTCACCTAAAACGTCGTCGTCCTGTCCACAACATGTCGCTCAAGCGTCCTTGA
BLAST of CSPI05G24470 vs. TrEMBL
Match: A0A0A0KWA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.2e-62
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 1

Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK 60
           MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK 60

Query: 61  KVEAQGFQVAKQKDNHKENVSGQEEQGTKLKKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120
           KVEAQGFQVAKQKDNHKENVSGQEEQGTKL KGKGRKWVKVADMSSQIFTMDYAHLKRRR
Sbjct: 61  KVEAQGFQVAKQKDNHKENVSGQEEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120

Query: 121 PVHNMSLKRP 131
           PVHNMSLKRP
Sbjct: 121 PVHNMSLKRP 130

BLAST of CSPI05G24470 vs. TrEMBL
Match: A0A067FSC2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038770mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-07
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = 1

Query: 5   VMAILCCVSILVLLIPSASSHA-LDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDKKVE 64
           V+  + C+S+ +L  P AS    L  S  +QA E   S L L RK ++L          E
Sbjct: 19  VITSVLCISLYLLQTPFASLEIQLQPSHDVQAKEVQLSRLTLPRKLRVLT--------AE 78

Query: 65  AQGFQVAKQKDNHKENVSG------------QEEQGTKLKKGKGRKWVKVADMSSQIFTM 124
            +G + A+ K  HKE+VS              +EQG K   G  ++WV+  D +SQ FTM
Sbjct: 79  VKGLE-AQDKMTHKEDVSAGNTNRLNNKYKNNKEQGVKPGGGTRQEWVEGGD-TSQYFTM 138

Query: 125 DYAHLKRRRPVHNMSL 128
           DY+H+KRRRP+HN SL
Sbjct: 139 DYSHVKRRRPIHNKSL 144

BLAST of CSPI05G24470 vs. NCBI nr
Match: gi|778705657|ref|XP_004135427.2| (PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 7.4e-62
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 1

Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK 60
           MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK 60

Query: 61  KVEAQGFQVAKQKDNHKENVSGQEEQGTKLKKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120
           KVEAQGFQVAKQKDNHKENVSGQEEQGTKL KGKGRKWVKVADMSSQIFTMDYAHLKRRR
Sbjct: 61  KVEAQGFQVAKQKDNHKENVSGQEEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120

Query: 121 PVHNMSLKRP 131
           PVHNMSLKRP
Sbjct: 121 PVHNMSLKRP 130

BLAST of CSPI05G24470 vs. NCBI nr
Match: gi|659091296|ref|XP_008446475.1| (PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 2.4e-52
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 1

Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60
           MGLIVMAILCCVSIL+LLIPSASSHALDQSSPLQATE VHSP LVLGRKFKML+EAAR+D
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KKVEAQGFQVAKQKDNHKENVSGQEEQGTKLKKGKGRKWVKVADMSSQIFTMDYAHLKRR 120
           K+VE QGFQVAKQ DNHKENVSG+EE+G KL K KGRK V VADMSSQIFTMDYAHLKRR
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKRR 120

Query: 121 RPVHNMSLKRP 131
           RPVHNMSL RP
Sbjct: 121 RPVHNMSLNRP 131

BLAST of CSPI05G24470 vs. NCBI nr
Match: gi|641851398|gb|KDO70269.1| (hypothetical protein CISIN_1g038770mg [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-07
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = 1

Query: 5   VMAILCCVSILVLLIPSASSHA-LDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDKKVE 64
           V+  + C+S+ +L  P AS    L  S  +QA E   S L L RK ++L          E
Sbjct: 19  VITSVLCISLYLLQTPFASLEIQLQPSHDVQAKEVQLSRLTLPRKLRVLT--------AE 78

Query: 65  AQGFQVAKQKDNHKENVSG------------QEEQGTKLKKGKGRKWVKVADMSSQIFTM 124
            +G + A+ K  HKE+VS              +EQG K   G  ++WV+  D +SQ FTM
Sbjct: 79  VKGLE-AQDKMTHKEDVSAGNTNRLNNKYKNNKEQGVKPGGGTRQEWVEGGD-TSQYFTM 138

Query: 125 DYAHLKRRRPVHNMSL 128
           DY+H+KRRRP+HN SL
Sbjct: 139 DYSHVKRRRPIHNKSL 144

BLAST of CSPI05G24470 vs. NCBI nr
Match: gi|1000976039|ref|XP_015571994.1| (PREDICTED: probable root meristem growth factor 8 [Ricinus communis])

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-06
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1

Query: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEG---VHSPLVLGRKFKMLEEAAR 60
           M L+V+    C+ + +L+ P A     +Q S      G   +HS   L RK ++L + A 
Sbjct: 1   MELLVIFTSLCICLSMLVTPCAGFQTEEQPSHKGQGIGADEMHSLPTLPRKLRVLLDKAA 60

Query: 61  VDKKVEAQGFQVAKQKDNHKENVSGQ----EEQGTKLKKGKGRKWVKVADMSSQIFTMDY 120
           +   V+  G QV+   +  K ++SG+    EE      +G  ++W +  D +SQ  TMDY
Sbjct: 61  LPAAVKGHGGQVSTSNNKQKRDLSGKAHHGEESMINASRGTRQEWAEGTD-TSQFLTMDY 120

Query: 121 AHLKRRRPVHNMSL 128
           +H++RRRP+HN SL
Sbjct: 121 SHVRRRRPIHNKSL 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWA1_CUCSA5.2e-6299.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1[more]
A0A067FSC2_CITSI4.8e-0738.24Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038770mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778705657|ref|XP_004135427.2|7.4e-6299.23PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus][more]
gi|659091296|ref|XP_008446475.1|2.4e-5287.79PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo][more]
gi|641851398|gb|KDO70269.1|6.8e-0738.24hypothetical protein CISIN_1g038770mg [Citrus sinensis][more]
gi|1000976039|ref|XP_015571994.1|7.6e-0632.84PREDICTED: probable root meristem growth factor 8 [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G24470.1CSPI05G24470.1mRNA


The following gene(s) are paralogous to this gene:

None