CmoCh04G016510 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 8417360 .. 8418726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGGTGTGTATATTCAGTCATGTCTCTCTCCTTCTTCTACATTTTGTTCTTGTTCTTAATGGAGTTATTTGTGATCTTGCAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGGTTTGAGAATGCTTTTGAAATAAGTTATAAAAGAACATTACGAACATAATCGTAGAGCCGGTTTGGAATGATTTTTCGAATTCGTAAAAACATTTTTGAACTAAGTTTTTCATTGTTAATATCCAACTCTTCTAAACCATCTGGGCATTGTTCTATCTGTGTTCATTCTCTGCTGTTGAAGTTGTGATATACATCACTGATGATTTTCCTGGAAACAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAAGTATGCAAGTTCTTAAATAACTCATTCCTGTCATATCTGTAATCTTGCCAGTTCTTTGACTAAAAACTGCTGCAACATTGCTTCCTTGAAGATGGAAAATTTGTGGGCTTGCCATTTTTGAGTAACAATGCATTAAATAAATGTACTTTCTTTTTCACATTTTTGATACATATCTTCACTTTCAGATAATTTTCCTGCCATTTTTGTTCTCAAATCACTTCATGAATATCTTTTGTTTTGATTAGTTGGCCTTTTACTTTTACTTTAGCCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTACATTTCAATTACCGTTCATCATGTTGTCATATCAATAAGCGGTCAGAGTTTGTAGATTGAATTTCTGCCTAAAATGAGTATATATCAATTATCGTTCATCGTGTTGTCACATCCTGGTTATGGATATTGATGATGTGAATATTTGGTAATATTTTTTAATGAATGCATTTGAGATATGGTATTAATTTAATCGTCATATTTACAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGAAGTTATCTCAATTTCTAATCTAACCCCTTCATTTCTTTTCCTTTTCCAATTTTAACCCATGAAAATGAAGGATTTGCATTCTTAGCCCATATGTTATGGCCGACAAAATGGCAGACTAGTTTAGAGGCTTA

mRNA sequence

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAACCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGAAGTTATCTCAATTTCTAATCTAACCCCTTCATTTCTTTTCCTTTTCCAATTTTAACCCATGAAAATGAAGGATTTGCATTCTTAGCCCATATGTTATGGCCGACAAAATGGCAGACTAGTTTAGAGGCTTA

Coding sequence (CDS)

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAACCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGA

Homology

[Close]

BLAST of CmoCh04G016510 vs. TrEMBL
Match: A0A0A0KWA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 95/156 (60.90%), Postives = 107/156 (68.59%), Query Frame = 1


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQATE VHSP LVL RKFKMLEEA    
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VEA GFQ +KQ+D  KE VSG + Q                           + NKGK
Sbjct: 61  KKVEAQGFQVAKQKDNHKENVSGQEEQ-------------------------GTKLNKGK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRKW  VADMSS+ FTMDYAH+KRRRPVHNMS +RP
Sbjct: 121 GRKWVKVADMSSQIFTMDYAHLKRRRPVHNMSLKRP 130

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: gi|778705657|ref|XP_004135427.2| (PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 95/156 (60.90%), Postives = 107/156 (68.59%), Query Frame = 1


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQATE VHSP LVL RKFKMLEEA    
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VEA GFQ +KQ+D  KE VSG + Q                           + NKGK
Sbjct: 61  KKVEAQGFQVAKQKDNHKENVSGQEEQ-------------------------GTKLNKGK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRKW  VADMSS+ FTMDYAH+KRRRPVHNMS +RP
Sbjct: 121 GRKWVKVADMSSQIFTMDYAHLKRRRPVHNMSLKRP 130

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: gi|659091296|ref|XP_008446475.1| (PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 94/156 (60.26%), Postives = 104/156 (66.67%), Query Frame = 1


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQATEAVHSPRLVL RKFKML+EA    
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VE  GFQ +KQ D  KE VSG                          +    + NK K
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSG-------------------------EEEKGMKLNKRK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRK  NVADMSS+ FTMDYAH+KRRRPVHNMS  RP
Sbjct: 121 GRKGVNVADMSSQIFTMDYAHLKRRRPVHNMSLNRP 131

The following BLAST results are available for this feature:

BLAST of CmoCh04G016510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA1_CUCSA	1.3e-35	60.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606860 PE=4 SV=1	[more]

BLAST of CmoCh04G016510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705657\|ref\|XP_004135427.2\|	1.8e-35	60.90	PREDICTED: uncharacterized protein LOC101218668 [Cucumis sativus]	[more]
gi\|659091296\|ref\|XP_008446475.1\|	1.5e-34	60.26	PREDICTED: uncharacterized protein LOC103489200 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016510.1	CmoCh04G016510.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G016510	CmaCh04G015790	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016510	Cla020318	Watermelon (97103) v1	cmowmB693
CmoCh04G016510	Csa5G606860	Cucumber (Chinese Long) v2	cmocuB741
CmoCh04G016510	MELO3C012168	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G016510	ClCG05G023540	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G016510	CSPI05G24470	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G016510	Lsi04G003470	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G016510	Cp4.1LG01g13130	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016510	MELO3C012168.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G016510	CsaV3_5G033480	Cucumber (Chinese Long) v3	cmocucB0877
CmoCh04G016510	Cla97C05G105520	Watermelon (97103) v2	cmowmbB729
CmoCh04G016510	Bhi07G001203	Wax gourd	cmowgoB0892
CmoCh04G016510	Carg01773	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016510	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G016510	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G016510	Cucumber (Gy14) v1	cgycmoB0793
CmoCh04G016510	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G016510	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G016510	Cucurbita pepo (Zucchini)	cmocpeB676
CmoCh04G016510	Cucumber (Gy14) v2	cgybcmoB650