Cp4.1LG01g13100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g13100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAnticodon-binding domain protein
LocationCp4.1LG01 : 8451970 .. 8454838 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGTTAATCAATCTGGGTTCTTGAATTCCTTAACTTCGTTTCTGTTCTCTTTGTCTTGGATTGACACAGGAAGGTTCGAAACCAGGACCTCGTAGGAACATAAGGCTGCTGAAAGCCAATTATATAAAAGAATTTTCGTTTTTGGGACATGGGGAAGATCCTCTTGATCTCAAAAACTGTTACCTTGATCTCAATACTCTCCGTGCTAGAGAGGAACTCGCCATTAGGTACCTCAATAATCTGTTCTAAATTTTTGTGGGTTTTCGTTGCTTAATCGTGATTTTAGTTGTTTCTGTTCAATTACATGTTCTGTTTCTCCTTTGGTCGTACTGGGTTTTGCAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACAAGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGTAAGTTTAGTTGTCCTTTGTTGGTAGGAATATTTGGAAAGTGTACTTCGATTTATTTTCTACTATTTTTAGTCCATGTCCACGCATTTATGTAACATGTGGCAATTTTATCAGTTTTCTTTGTCATGCAAAATGTTCCTATTGGTTTCACATTAAGAGAATCCATGAATGCTCTTATATGTTTCTTTATGTGCGTTGGGTTGACAAACTTGTTCACGGGTCATTGCAAGCGGGCATTGGTTACAATGGAACGGAATCACTCCCTGCAGCTCTTCTGTTGAAGTTCTTTTAAAAGCTTATGTTACAATGGAATGGAAATTTTTTTATTATTGTGATGAGTAATTGGATCATGGAACCAATATTTCTAATGAGTTTGTGGTACTTTTATGGACGTTGTTAAGGTATTGATGACAACTAGGAAGTCTGATAATGGTCTGCTTGATGTTTTAATATCTTTGGTTAGTTATCATATTAGATCCCACATGGTTTATAGAGAGGAATGAGTGCCAGCAAGGATGTTGGTCTTGAAGGGGGTGGATTGTGAAATCCTACGTCGGTTGGAGAGAGGAACGAGTGCCAGCGAGGACGCTGAGCTCTTAAGGGGGGTGGATTATGAGTCCCACATCAGTTGGAGAGGAGAATGAAACATTTTTTATAAGGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATACTTGCTAGCGGTGGGCTTGGGGTGTTACATATCACTTATATTCAAAAGACCACGGTGCATTATTGTGCCATATATTTCCTATAGTGTTCACAATGGACGAGATGGAATTGATTTATTCTCTTAGGAGCATTGAAATATGAATATCATTGTCCAAGTCGGTCAGCATAGTACTTTTTTCTCTCTGAACATTTGCCTCAGTGTTTCTGGGGTAATGGAAAACAAAGAAATCATGCTATAACTCTTAAGAAGTCTTTGAATGATATAACATTAAGGCTTTACTTTTTTCCCTAAACTATGTATGGTAGTTCTTACATCTTTTGGTTTCTATGATATTGTTCTTGGTCCGAACTTTTTGAATGCCGTGATAGTTGTATACTAGCACCACTAGAGTAGTTTTACATATAATTGCTTTCCAACATTTTTGGAACTTATTTACTTTTGTCATTCCCAATGCCAAAGTCATAGTTGGTATTATTGTGATGCAAGTTCCTTGATTTGAAGTTGGAATGACTATGTTAGTTTAAGTTCAATTAGGTATTTTAAGAACTTAATTTTTTCAGCCCTGCCTGGTCTTTTTCTCCTGTTATGGAGTAAAAATTAGAGAATGGTTTGGGCACCTGGTGGGGTTGCAAACCCAAGTAAGCTCATCTGATGATCTAATTTTGTGAGGCATGTTCATACAGAATTTCAGATACTACCGAAACGAATCGTGATAGGCTTTAATCTTCTCAAACTTTCTATAGTATTGATCATTTTCTCTTGCTGTTTCAGCTGTATAATTTTTCTACTTCGTAGACTCTGCACTATTGTTTTGATATTCTGACTAAGGCGATCAGTGCAATCCTAGGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGGTAAGCATCTATTAGTAATGTTCTTAACCATGGATATTACTAGCTTTTCACTTCTTTCCTTGCAATGCCTTGCACAAACCTCTTTACCTATACATTCTTTTGTTCTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGATGGTTATTGATCCTTATCCTTCTTTTCTGGGTGATAGGCGATTACCGGTACTGTACCGAGCCTTTTGCTAATGAGGGGAAGGTACAATCTCTTTTAGAGGCATCTCCATGTCAGCAATCATGAAGGGATTTAGTGTTTGAGTGGTACCTAATCTGTTGCCGAAGTTTTTATGTTTACTGAACTTCTGGTGGTCGATTTTTTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGTGTCCATGTTTAAGGTTTCCAAGATTTGCTCTGTTGCAATCTATCAAAATTGAAATGAGCAAAGTCAGATGTAATAACTGCCCACCTTTTATTCAACCATAATGTCTTACCTCTCAACTTTTTTGTGTTTACTATCAAACATCATGAACACGTGTTTGACGTAATTGATGCGCTGGGCGTCTAATCGTTTGAGGTTTAAGATCATCTCT

mRNA sequence

ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGTTAATCAATCTGGGTTCTTGAATTCCTTAACTTCGTTTCTGTTCTCTTTGTCTTGGATTGACACAGGAAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACAAGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGATGGTTATTGATCCTTATCCTTCTTTTCTGGGTGATAGGCGATTACCGGTACTGTACCGAGCCTTTTGCTAATGAGGGGAAGGTACAATCTCTTTTAGAGGCATCTCCATGTCAGCAATCATGAAGGGATTTAGTGTTTGAGTGGTACCTAATCTGTTGCCGAAGTTTTTATGTTTACTGAACTTCTGGTGGTCGATTTTTTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGTGTCCATGTTTAAGGTTTCCAAGATTTGCTCTGTTGCAATCTATCAAAATTGAAATGAGCAAAGTCAGATGTAATAACTGCCCACCTTTTATTCAACCATAATGTCTTACCTCTCAACTTTTTTGTGTTTACTATCAAACATCATGAACACGTGTTTGACGTAATTGATGCGCTGGGCGTCTAATCGTTTGAGGTTTAAGATCATCTCT

Coding sequence (CDS)

ATGGCACTGGACAGCGGCAATGGGGATGACTTCTCTGTTGGGTCATTCTTCTCAATCAAGACGACCTTAGGGGATGAATTTCAAGCACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAGCTTTTTGTGTTAATCAATCTGGGTTCTTGAATTCCTTAACTTCGTTTCTGTTCTCTTTGTCTTGGATTGACACAGGAAGGCAAGCAGAAATAGAGGCGGAGAGAATAGGAGTGGGTGTGACAAGCGAGGCGCAAAGTATTTTTGACGCCTTGTCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTATCTACCAGAATCTGTTTCTGGAGGCACCCCTGCTGCCAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGCGGAGGTGGTGGTCAGTGA

Protein sequence

MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCVNQSGFLNSLTSFLFSLSWIDTGRQAEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGGGQ
Homology
[Close]
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match: LS12A_DANRE (Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-10
Identity = 52/165 (31.52%), Postives = 78/165 (47.27%), Query Frame = 1 

Query: 6   GNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGF------------LAFC 65
           G G+ FSVGS  S  T LG   Q +V+ FD PS +L L   S              LA+ 
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAY- 64

Query: 66  VNQSGFLNSLTSF---LFSLSWIDTGRQAEIEAE-------RIGVGVTSEAQSIFDALSK 125
           V++   +N  T     L SL+      +A  E E        I  GV+ E Q +F  + K
Sbjct: 65  VSEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHK 124

Query: 126 TLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 148
           T+   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 125 TIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

[Close]
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match: LSM12_XENLA (Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 46/173 (26.59%), Postives = 74/173 (42.77%), Query Frame = 1 

Query: 5   SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCVNQSGFLNSLT 64
           +G G+ F++G++ S +T      Q +V+ FD PS +L L         C + SG  N   
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALK--------CPSSSGKANHAD 61

Query: 65  SFLFSLSWIDT----------------------GRQAEIEAER-------IGVGVTSEAQ 124
             L +L ++                          +A +E E        I  GV+ + Q
Sbjct: 62  ILLLNLDYVSDVEVINERTQTPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQ 121

Query: 125 SIFDALSKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 148
            +F  + KT+   +W +  IVVM+EV +S PY  E+  G    A   V K++E
Sbjct: 122 QLFQTIHKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166

[Close]
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match: LSM12_CHICK (Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 1 

Query: 8   GDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLH------------ILSGFLAFCVN 67
           G+ FSVGS  S +T      Q +V+ FD PS +L L             IL   L + V+
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQY-VS 64

Query: 68  QSGFLNSLTSF---LFSLSWIDTGRQAEIEAER-------IGVGVTSEAQSIFDALSKTL 127
           +   +N  T     L SL+      +A +E E        I  GV+ E Q +F  + KT+
Sbjct: 65  EVEIINDRTETPPPLASLNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQTIHKTI 124

Query: 128 P-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 148
              +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 125 KDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVE 166

[Close]
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match: LSM12_BOVIN (Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 46/170 (27.06%), Postives = 73/170 (42.94%), Query Frame = 1 

Query: 8   GDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCVNQSGFLNSLTSFL 67
           G+ FSVGS  S +T      Q +V+ FD  S +L L         C + SG  N     L
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALK--------CPSSSGKPNHADILL 65

Query: 68  FSLSWID----------------------------TGRQAEI-EAERIGVGVTSEAQSIF 127
            +L ++                             T ++ ++ +A  I  GV+ E Q +F
Sbjct: 66  INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 125

Query: 128 DALSKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 148
             + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 QTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match: LSM12_HUMAN (Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 46/170 (27.06%), Postives = 73/170 (42.94%), Query Frame = 1 

Query: 8   GDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCVNQSGFLNSLTSFL 67
           G+ FSVGS  S +T      Q +V+ FD  S +L L         C + SG  N     L
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALK--------CPSSSGKPNHADILL 65

Query: 68  FSLSWID----------------------------TGRQAEI-EAERIGVGVTSEAQSIF 127
            +L ++                             T ++ ++ +A  I  GV+ E Q +F
Sbjct: 66  INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 125

Query: 128 DALSKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 148
             + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 QTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match: A0A0A0KQA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 129/180 (71.67%), Postives = 134/180 (74.44%), Query Frame = 1 

Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG---------FL 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL   S            
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  AFCVNQSGFLN------SLTSFLFSLSWIDTG-----RQAEIEAERIGVGVTSEAQSIFD 120
           A  + +  FL        L +    L+ +        RQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 160
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match: M5Y5P3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 108/179 (60.34%), Postives = 123/179 (68.72%), Query Frame = 1 

Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG---------FLA 60
           MA+D  N ++ ++G F SIKTTL DEFQ QVITFDRPSNI+V+   S            A
Sbjct: 71  MAMDGSNAEELAIGCFVSIKTTLSDEFQGQVITFDRPSNIVVIQEGSKGGSRRNIRLLKA 130

Query: 61  FCVNQSGFLNSLTSFL-FSLSWIDTG----------RQAEIEAERIGVGVTSEAQSIFDA 120
             + +  +L      L     ++D            RQAE E+ERIGVGVTS+AQ+IFDA
Sbjct: 131 NYIKELSYLGQAEDPLDVKNCYLDLNSLRAREELAIRQAEAESERIGVGVTSQAQNIFDA 190

Query: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 160
           LSKTLPVRWDKTVIVVMN VRVSSPY PESVSGGTPAANERVKKVLELERKRLQ RG G
Sbjct: 191 LSKTLPVRWDKTVIVVMNAVRVSSPYTPESVSGGTPAANERVKKVLELERKRLQTRGSG 249

[Close]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match: A0A103XVR1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000101 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.0e-44
Identity = 109/182 (59.89%), Postives = 125/182 (68.68%), Query Frame = 1 

Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLH-----------ILSG 60
           MA+D S  GD+F+VG   SIKTTLGDEF+ QVIT+DRPSNI+VL             +  
Sbjct: 1   MAMDGSSGGDEFAVGCLLSIKTTLGDEFEGQVITYDRPSNIVVLQEGLKSNPQSRRSIRF 60

Query: 61  FLAFCVNQSGFLNSLTSFL-FSLSWIDTG----------RQAEIEAERIGVGVTSEAQSI 120
             A  + +  FL      L     ++D            RQAEI+ ERIGVGVT+EAQSI
Sbjct: 61  LKANYIKEFSFLGQSDDPLDLKKCYLDLNSLQSKEEAAVRQAEIDVERIGVGVTAEAQSI 120

Query: 121 FDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRG 160
           FDALSKTLPVRWDKT IVVMNEVRVSSPYL ESV+GGTPAANERV+KVLELER+RLQ RG
Sbjct: 121 FDALSKTLPVRWDKTAIVVMNEVRVSSPYLAESVTGGTPAANERVRKVLELERRRLQTRG 180

[Close]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match: A0A067JMS9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 112/173 (64.74%), Postives = 121/173 (69.94%), Query Frame = 1 

Query: 5   SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG--------FL-AFCVN 64
           S N +DF+VG   SIKTTLG+EF+ QVITFDRPSNILVL   S         FL A  + 
Sbjct: 4   SNNSEDFAVGCLLSIKTTLGEEFEGQVITFDRPSNILVLQEGSKTGPRRNIRFLKANYIK 63

Query: 65  QSGFLNSLTSFL-FSLSWIDTG----------RQAEIEAERIGVGVTSEAQSIFDALSKT 124
           +  FL      L     +ID            RQAE EAERIGVGVT+EAQSIFDALSKT
Sbjct: 64  EFSFLGQAEDPLDVKKCYIDLHSLQAREELALRQAEAEAERIGVGVTAEAQSIFDALSKT 123

Query: 125 LPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRG 158
           LPVRWDKTVIVVMNEVRV SPYLPE V GGTPAAN+RVKKVLE ERKRLQVRG
Sbjct: 124 LPVRWDKTVIVVMNEVRVGSPYLPECVIGGTPAANDRVKKVLEFERKRLQVRG 176

[Close]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match: V7C682_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G054400g PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43
Identity = 108/175 (61.71%), Postives = 120/175 (68.57%), Query Frame = 1 

Query: 7   NGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG---------FLAFCVNQS 66
           N +D +VG   SI+TTLGDEF+ QV+TFDRPSNILVL   S            A  +   
Sbjct: 11  NPEDLAVGCLLSIRTTLGDEFEGQVVTFDRPSNILVLQEPSKHGPRRNIRLLKANYIKDF 70

Query: 67  GFLNSL------TSFLFSLSWIDTG-----RQAEIEAERIGVGVTSEAQSIFDALSKTLP 126
            FL         T+    L+ +        RQAE +AERIGVGVTSEAQSIFDALSKTLP
Sbjct: 71  TFLGQAEDPLDPTNCFLDLAALQAREEVAIRQAEADAERIGVGVTSEAQSIFDALSKTLP 130

Query: 127 VRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGGGQ 162
           VRWDKTVIVVMN+VRV SPY PESV GGTPAANERVKKVLE ERKRLQ+RG GGQ
Sbjct: 131 VRWDKTVIVVMNDVRVGSPYHPESVVGGTPAANERVKKVLEFERKRLQLRGSGGQ 185

[Close]
BLAST of Cp4.1LG01g13100 vs. TAIR10
Match: AT1G24050.1 (AT1G24050.1 RNA-processing, Lsm domain)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 79/176 (44.89%), Postives = 106/176 (60.23%), Query Frame = 1 

Query: 6   GNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLAFCVNQSGFLNSLTS 65
           G G+ F+VG+ +S+K   GDEF+  V+ +D   N +     +      +  +  +N+  S
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNA--S 73

Query: 66  FLFSLSWIDTG------------------------RQAEIEAERIGVGVTSEAQSIFDAL 125
           F+  LS++                           RQAE +AER+GVGVT+EAQSIFDAL
Sbjct: 74  FITGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDAL 133

Query: 126 SKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRG 158
           SKTLPV+W+ + I+VM EVRV SPYL + V GGT AAN RVKKVLELER+RLQ+ G
Sbjct: 134 SKTLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]
BLAST of Cp4.1LG01g13100 vs. TAIR10
Match: AT1G70220.1 (AT1G70220.1 RNA-processing, Lsm domain)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 73  IDTGRQAEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVS 132
           I+    A    E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + SPY  + V 
Sbjct: 139 IEKENHAISNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGDVFIRSPYHSDCVY 198

Query: 133 GGTPAANERVKKVLELERKRLQV 156
           GG    NERVK VL  ERK+LQ+
Sbjct: 199 GGPRMVNERVKHVLGQERKKLQL 221

[Close]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match: gi|449434891|ref|XP_004135229.1| (PREDICTED: protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-52
Identity = 129/180 (71.67%), Postives = 134/180 (74.44%), Query Frame = 1 

Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG---------FL 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL   S            
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  AFCVNQSGFLN------SLTSFLFSLSWIDTG-----RQAEIEAERIGVGVTSEAQSIFD 120
           A  + +  FL        L +    L+ +        RQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 160
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match: gi|659092318|ref|XP_008447009.1| (PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 4.0e-49
Identity = 126/200 (63.00%), Postives = 135/200 (67.50%), Query Frame = 1 

Query: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNIL------------------ 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTTLGDEFQGQVITFDRPS 60

Query: 61  -VLHILSG-----------FLAFCVNQSGFLN------SLTSFLFSLSWIDTG-----RQ 120
            +L +  G             A  + +  FL        L +    L+ +        RQ
Sbjct: 61  NILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQ 120

Query: 121 AEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAA 159
           AE EAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAA
Sbjct: 121 AEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAA 180

[Close]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match: gi|720051218|ref|XP_010272019.1| (PREDICTED: protein LSM12 homolog A [Nelumbo nucifera])

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-45
Identity = 113/177 (63.84%), Postives = 126/177 (71.19%), Query Frame = 1 

Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG--------FL-A 60
           MA D+ NGD+F+VG   +IKTTLG+EF+ Q+ITFDRPSNILVL   S         FL A
Sbjct: 1   MATDTNNGDEFAVGCLLAIKTTLGEEFEGQIITFDRPSNILVLQEGSKTGPRRNVRFLKA 60

Query: 61  FCVNQSGFLNSLTSFL-FSLSWIDTG----------RQAEIEAERIGVGVTSEAQSIFDA 120
             + +   L      L     ++D            RQAEIEAERIGVGVTSEAQSIFDA
Sbjct: 61  NYIKEFNLLGQAEDPLDLKKCYLDLNSLQAREESAIRQAEIEAERIGVGVTSEAQSIFDA 120

Query: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRG 158
           LSKTLPV WDKT IVVMNEVRVSSPYLPE+V+GGTPAANERVKKVLELERKRLQ RG
Sbjct: 121 LSKTLPVHWDKTAIVVMNEVRVSSPYLPENVTGGTPAANERVKKVLELERKRLQSRG 177

[Close]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match: gi|658009561|ref|XP_008339997.1| (PREDICTED: uncharacterized protein LOC103402983 [Malus domestica])

HSP 1 Score: 189.1 bits (479), Expect = 6.0e-45
Identity = 108/179 (60.34%), Postives = 128/179 (71.51%), Query Frame = 1 

Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSGFLA---FCVNQS 60
           MA+D  N ++F++GSF  IKTTL DEFQ QVITFDRPSNI+V+   S   A     + ++
Sbjct: 1   MAMDGSNTEEFAIGSFVKIKTTLSDEFQGQVITFDRPSNIVVIQEGSKGGARRNIRLLKA 60

Query: 61  GFLNSLT-------SFLFSLSWIDTG----------RQAEIEAERIGVGVTSEAQSIFDA 120
            ++  L+              ++D            RQAE E+ERIGVGVT++AQ+IFDA
Sbjct: 61  NYIKELSYSGQAEDPLDIKKCYLDLNSLRAREELAIRQAEAESERIGVGVTAQAQNIFDA 120

Query: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 160
           LSKTLPVRWDKTVIVVMNEVRVSSPY PESVSGGTPAANERVKKVLELER+RLQ RGGG
Sbjct: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYTPESVSGGTPAANERVKKVLELERRRLQTRGGG 179

[Close]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match: gi|1009166397|ref|XP_015901571.1| (PREDICTED: uncharacterized protein LOC107434605 [Ziziphus jujuba])

HSP 1 Score: 186.8 bits (473), Expect = 3.0e-44
Identity = 112/179 (62.57%), Postives = 126/179 (70.39%), Query Frame = 1 

Query: 1   MALDSGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLHILSG---------FLA 60
           MA+++ N +D +VG   SIKTTLGDEFQAQVI+FDR SNILVL   S            A
Sbjct: 1   MAMEATNVEDVAVGCILSIKTTLGDEFQAQVISFDRLSNILVLQERSKPGPRRNIRLLKA 60

Query: 61  FCVNQSGFLNSLTSFL------FSLSWIDTG-----RQAEIEAERIGVGVTSEAQSIFDA 120
             + +  FL      L        L+ + T      RQAE++AERIGVGVTSEAQSIFDA
Sbjct: 61  NYIKEFTFLGQAEDPLDVKKCYLDLNSLQTREEVAVRQAELDAERIGVGVTSEAQSIFDA 120

Query: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 160
           LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAAN+RVKKV+E ERKRLQ R  G
Sbjct: 121 LSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANDRVKKVIEFERKRLQSRSSG 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LS12A_DANRE3.6e-1031.52Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1[more]
LSM12_XENLA2.0e-0826.59Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1[more]
LSM12_CHICK4.5e-0831.29Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1[more]
LSM12_BOVIN1.3e-0727.06Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2[more]
LSM12_HUMAN1.3e-0727.06Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2[more]
BLAST of Cp4.1LG01g13100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQA9_CUCSA7.1e-5371.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1[more]
M5Y5P3_PRUPE2.7e-4460.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1[more]
A0A103XVR1_CYNCS6.0e-4459.89Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000101 PE=4 ... [more]
A0A067JMS9_JATCU1.0e-4364.74Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1[more]
V7C682_PHAVU1.7e-4361.71Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G054400g PE=4 SV=1[more]
BLAST of Cp4.1LG01g13100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24050.11.2e-3044.89 RNA-processing, Lsm domain[more]
AT1G70220.16.2e-1650.60 RNA-processing, Lsm domain[more]
BLAST of Cp4.1LG01g13100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434891|ref|XP_004135229.1|1.0e-5271.67PREDICTED: protein LSM12 homolog A [Cucumis sativus][more]
gi|659092318|ref|XP_008447009.1|4.0e-4963.00PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo][more]
gi|720051218|ref|XP_010272019.1|1.2e-4563.84PREDICTED: protein LSM12 homolog A [Nelumbo nucifera][more]
gi|658009561|ref|XP_008339997.1|6.0e-4560.34PREDICTED: uncharacterized protein LOC103402983 [Malus domestica][more]
gi|1009166397|ref|XP_015901571.1|3.0e-4462.57PREDICTED: uncharacterized protein LOC107434605 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13100.1Cp4.1LG01g13100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 77..145
score: 5.1
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 69..145
score: 1.2
NoneNo IPR availablePANTHERPTHR13542UNCHARACTERIZEDcoord: 1..156
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g13100Cucsa.285820Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g13100CmaCh04G015870Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g13100CmoCh04G016590Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g13100Cla010110Watermelon (97103) v1cpewmB432
Cp4.1LG01g13100Csa5G603270Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g13100MELO3C012019Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g13100ClCG05G025100Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g13100CSPI05G22920Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g13100MELO3C012019.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g13100CsaV3_5G031800Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g13100Bhi07G001368Wax gourdcpewgoB0562
Cp4.1LG01g13100Carg01767Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g13100Cp4.1LG01g04180Cucurbita pepo (Zucchini)cpecpeB375
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g13100Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g13100Cucurbita maxima (Rimu)cmacpeB726
Cp4.1LG01g13100Cucurbita moschata (Rifu)cmocpeB678
Cp4.1LG01g13100Bottle gourd (USVL1VR-Ls)cpelsiB360