Cp4.1LG01g04180 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g04180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Anticodon-binding domain protein
Location	Cp4.1LG01 : 1472614 .. 1476377 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATGTGGTGAATTTAAAAAATAGTTTATTATTTGTTTATGAAATTAGAAATAGTAATTGGGGCTATTTAGGTCAAAAGATTAAAATTATGTGACATTGTTGAAGAAGAAAAGCCCTAATTTATATAGGGATTAGAAAATTATTACAGTCGTTACCAACTCCTTCAATAGGAGGAAGGGCGGTTGCAAGCGAGGAAGAAGGCGAGAATGGCACTGGATGGTTGCTGCAATGGAGATGACTTCACTGCTGGGTCCTTCTTCTCCATCAAGACAACCTTGGGCGATGAATTCCAAGGACAAGTCATTACTTTTGATGCCAATTCCAACATCCTCATCCTTCATATCCTTTCTGTGTTTCTACAATTTGTGTAATAGTTGTTATCAGTTGCTTCTTGAATTCCTTAGTTCTTTTCTGTTATCCTTAATTTTGTGGTTTCCACAAGAGGGTTCAAAGTCAGGACCTCGTAGAAACATAAGGCTGCTTAAGGCTAATTATATTAAGGAGTTTTCATTTTTGGGACATGGTGAAGATCCTATTGACCTCAAGAAGTGTTACTTGGATATCAATACTCTCCGGGCTCGAGAGGAACTGGCCATTAGGTTAGTCAATAGCCTATTGTGATTTTAGTTGTTTCTGATTCAATTATGTGTTCTCATTCTCTTTTGCTTCTCGGATTGTATTGAATTTCGCAGGCAAGCTGAGACAGACGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAGAGTATTTTTGACGCCTTATCTAAAACGTAAGCTTAATTTTATTTCGTTCCTTGGAATATTTGGAAAGTCTGTTTCGATTGTACTTAAAAATTTAAGGAGATTTCTTTTATACTGTTTTTAGTTCATGTCCACGCATTTTTGGTAATTAGTGACAATTTGATCGGTTTTCTTTGCTCATATAATTTTGATCATTTCTATGTATTGATACCATATTAAGAGAAGCCAAGAATGTTTTTGTGTTCTTATCATCTTAGATGCCTTCCTTGAGTGTTGGGTTCGTGACCTTGTCTTCAGATCATTACAGTGGATTCTCCCTCTTCTTACTCGCGGTTATTCTCTAGAAATTCGTTTAAAAGCTTAGTTACATTGAAAATGATTTAATTGATGAAATCTGTGACTTTTTCGGAAATTGATGAAATCTTTATGATAATAGGAAGTCTGTGTAATGGTCTACCTGGTTTTCAACCTTCACTAGTGATAACAGCTTTGATTAGAACCATGATGCTTTGTTGTGCCACATATTTCCTATCGTGTTGACAATGGATAAGATGCAATTGATTCATCCCTTCAGATTCAATTGGATATGAATATTACTTTCCAGCTTGGGCAGCATGATTACTCTGAAACTTGATGATTCGGGCCTTGCTATGATTACGACCTTGAACTCCCATGTCATAGCACTAATTCTTGTGCTATCAACCATGATTTGTTGGAAATTTTAGAAGAAATCATTTTATAAGTTTTAACATGTCTCTGGATGATATAACATTAAGATTGATTTTACTTTGTTCCCTTAAACTAATGATGGTAATTCTTACATCTTTTGTTGTTTATGATTTTGATCTTTGTACGACCTTTTGAAATCCATGGCAGTTGTTTAGAAGCACCACTCGAGTAGTTTTATGTATAATTGGGTACCAACTTCTATGGAACTTATTTATTTTTGCTGTTCCCAATGCAGAAGTCATAGTTGTTATTGCTTGGTGCTAGTTCCTCGATTTGAAGTTGGAACTTATGTCAGCTTCATTCTTTATTTGGTTTTTTGTACAACCAAAAATGGCCATGTTTGTTCAAATTTAATTAATAATTTTAGAACTTAATTTTTCTGTATTGCCAGGTTTCTTTAACGTATATGCTTTCATACTTTTGAGCCTGAGAAGGAATCAAGAACTTTTTCTTCAAGAGAGTATTATGCATTCTTATGGTAGAATTGTTTTATTTACCCCATATGATATCTAAATGATATCAATGGCTTGGTTCTATTAGGAACCACGGACCTCTACAATGGTATGACATTGTCTACTTTGAGCATAAGCTCTCATGGCTTTGCTTTTGTATTTCCAAAAGACCTCATACCAATGGAGATGTATTCCTTACTTATAAGCCCCCAAATCGTCCCCTTAATTAGCCAATGTGGGACTCCTCCCAACGATCCTCTCCTCAAACAAAGTACACCATAGAGTCTCCCTTGAGGCATATGGAGCCCTCAAACAACCTCCCCTTAATTGAGTCTCAACTTCTTCTCTGGAGCCTTCGAACAAAATATACTTTTTGTTCAACACTTAGTCACTTTTGACTACACCTTCGAGCCTCACAACTTTTTCGTTTGACACGTGAGGATTCTATTGACATGACTAAGTTAAGGGCATGACTCTGATACCGTGTTAGGAACCATGGACCTCCACAATGGTATGCTATTGTCTACTTTGAGCATAAGCTCTTGTAACTATGCTTTTGGGTTTCCCAAAAGATCTCATACCAATGGAGGTGTATTCCTTACTTATAAACTCATGATCATCCCCTTAATTAGCCAATGTGGGACTCCTCCCAACAATCCTCAACAGGTTCGAATGATCAATTTTTACTGTTTGTTGCTAAATGCATCCATTCTTTTGTCTTCTGTTATGGAATCTGAAAATTAGAGAACAGTATGGGCACCTGTTGGGATTATAAACCCAAGTATGCTCATCTGATGATCTGATTTTATGAGGCATGCACATACAGAATTACAAATGCAACAGAAATTAGATACAAAAGCATCATGATAAGCTTTAATCTTTTCGAACTTTTTATTGCATGGATCATTTTCTCTTGCTGTTTCAGCTGTATAATTTTTCTAGTTCGTAGACTCTGCTTTATTGTTTTGATATTCTGGCTAAGGCAATTAGTGCAATCCCAGGCTTCCTGTGCGTTGGGACAAGTCTGTCATTGTTGTAATGAATGAAGTACGTGTAAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACTCCTGCTGCCAATGACCGGGTGAAGAAAGTGGTACGAATCTTTGATAGCACTAGCTTTTCACTTCTTTCTTTGCAATGCCTTGTGCAAACCTCTTTACGTATGGATTTTTCTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGTGGTGGTCAGTGATGGTTATTCATCCCTCTTCTTCTTGGTGACAGGCAATTGCCTTAACTTAGTCCTTTTCTAATGGGGGAACGTAAAATCTCTTAAGGCATCTCAGTGTCAGCAATCATGAAGGGATTTCGTGTTCAAGTGGTACCCAATCTGTTGCCGAAGTTGTATGGTTATTGGACTCCTGGTTGTTGATTTTCTCCTGTTTATGAACTGCACTGGACGCGACCTGTCAAAGTTTTTTGTGGGTCCATATTTTTATGTTTTCCAAGATTTGCTCTGTTGCAACGTATTCAATTTGCAATGAGCAAACTAGATGTTATGACTATCCACCTCTTATTGAATCATAATGTGGAAAAACTAACCCTGATGTATTTGGAAAATTGAAGGAATAGGTTTCTCATGCTTCACCTCTCGACCTTTCTCTTTTAAGTATCAAGCATCATAACAGGGACAGCTTTGATGCTCCAGGCGTCTAATGGCCGAACATCGATGTCGTTTGGGGCCTAAGATCAGCCCCATATTCATCATTTACTTGCCTTATTTCGCTAGTTAGAATTAAGAATTCTTTTTGAAAACATTTTCTGT

mRNA sequence

ATGAAAAATGAGGAAGGGCGGTTGCAAGCGAGGAAGAAGGCGAGAATGGCACTGGATGGTTGCTGCAATGGAGATGACTTCACTGCTGGGTCCTTCTTCTCCATCAAGACAACCTTGGGCGATGAATTCCAAGGACAAGGTTCAAAGTCAGGACCTCGTAGAAACATAAGGCTGCTTAAGGCTAATTATATTAAGGAGTTTTCATTTTTGGGACATGGTGAAGATCCTATTGACCTCAAGAAGTGTTACTTGGATATCAATACTCTCCGGGCTCGAGAGGAACTGGCCATTAGGCAAGCTGAGACAGACGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAGAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTGCGTTGGGACAAGTCTGTCATTGTTGTAATGAATGAAGTACGTGTAAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACTCCTGCTGCCAATGACCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGTGGTGGTCAGTGATGGTTATTCATCCCTCTTCTTCTTGGTGACAGGCAATTGCCTTAACTTAGTCCTTTTCTAATGGGGGAACGTAAAATCTCTTAAGGCATCTCAGTGTCAGCAATCATGAAGGGATTTCGTGTTCAAGTGGTACCCAATCTGTTGCCGAAGTTGTATGGTTATTGGACTCCTGGTTGTTGATTTTCTCCTGTTTATGAACTGCACTGGACGCGACCTGTCAAAGTTTTTTGTGGGTCCATATTTTTATGTTTTCCAAGATTTGCTCTGTTGCAACGTATTCAATTTGCAATGAGCAAACTAGATGTTATGACTATCCACCTCTTATTGAATCATAATGTGGAAAAACTAACCCTGATGTATTTGGAAAATTGAAGGAATAGGTTTCTCATGCTTCACCTCTCGACCTTTCTCTTTTAAGTATCAAGCATCATAACAGGGACAGCTTTGATGCTCCAGGCGTCTAATGGCCGAACATCGATGTCGTTTGGGGCCTAAGATCAGCCCCATATTCATCATTTACTTGCCTTATTTCGCTAGTTAGAATTAAGAATTCTTTTTGAAAACATTTTCTGT

Coding sequence (CDS)

ATGAAAAATGAGGAAGGGCGGTTGCAAGCGAGGAAGAAGGCGAGAATGGCACTGGATGGTTGCTGCAATGGAGATGACTTCACTGCTGGGTCCTTCTTCTCCATCAAGACAACCTTGGGCGATGAATTCCAAGGACAAGGTTCAAAGTCAGGACCTCGTAGAAACATAAGGCTGCTTAAGGCTAATTATATTAAGGAGTTTTCATTTTTGGGACATGGTGAAGATCCTATTGACCTCAAGAAGTGTTACTTGGATATCAATACTCTCCGGGCTCGAGAGGAACTGGCCATTAGGCAAGCTGAGACAGACGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAGAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTGCGTTGGGACAAGTCTGTCATTGTTGTAATGAATGAAGTACGTGTAAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACTCCTGCTGCCAATGACCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGTGGTGGTCAGTGA

Protein sequence

MKNEEGRLQARKKARMALDGCCNGDDFTAGSFFSIKTTLGDEFQGQGSKSGPRRNIRLLKANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ

Homology

[Close]

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot
Match: LS12A_DANRE (Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 45/164 (27.44%), Postives = 72/164 (43.90%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRR--NIRLLKANYIKE 83
           G+ F+ GS  S  T LG   QG+                S SG     ++ L+   Y+ E
Sbjct: 7   GEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYVSE 66

Query: 84  FSFLG-HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKT 143
              +    E P  L    L+I+ L  R         + A  I  GV+ E Q +F  + KT
Sbjct: 67  VDIINDRTETPPPLAS--LNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHKT 126

Query: 144 LP-VRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLE 169
           +   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 127 IKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

[Close]

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot
Match: LSM12_BOVIN (Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 44/164 (26.83%), Postives = 72/164 (43.90%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGP--RRNIRLLKANYIKE 83
           G+ F+ GS  S +T      QG+                S SG     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 84  FSFLG-HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKT 143
              +    E P  L    L+++ L ++      +  + A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLAS--LNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 125

Query: 144 LP-VRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot
Match: LSM12_HUMAN (Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 44/164 (26.83%), Postives = 72/164 (43.90%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGP--RRNIRLLKANYIKE 83
           G+ F+ GS  S +T      QG+                S SG     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 84  FSFLG-HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKT 143
              +    E P  L    L+++ L ++      +  + A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLAS--LNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 125

Query: 144 LP-VRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot
Match: LSM12_MOUSE (Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 44/164 (26.83%), Postives = 72/164 (43.90%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGP--RRNIRLLKANYIKE 83
           G+ F+ GS  S +T      QG+                S SG     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 84  FSFLG-HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKT 143
              +    E P  L    L+++ L ++      +  + A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLAS--LNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 125

Query: 144 LP-VRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot
Match: LSM12_PONAB (Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 44/164 (26.83%), Postives = 72/164 (43.90%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGP--RRNIRLLKANYIKE 83
           G+ F+ GS  S +T      QG+                S SG     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 84  FSFLG-HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKT 143
              +    E P  L    L+++ L ++      +  + A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLAS--LNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 125

Query: 144 LP-VRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Cp4.1LG01g04180 vs. TrEMBL
Match: A0A0A0KQA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.6e-77
Identity = 151/181 (83.43%), Postives = 159/181 (87.85%), Query Frame = 1


Query: 16  MALDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRNIRLLK 75
           MALDG  NGDDF+ GSFFSIKTTLGDEFQGQ               GSK GPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 76  ANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFD 135
           ANYIKEFSFLGHGEDP+DLK CYLD+NTLRAREELAIRQAE +AERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 136 ALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGG 182
           ALSKTLPVRWDK+VIVVMNEVRVS+PYLPESV+GGTPAAN+RVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]

BLAST of Cp4.1LG01g04180 vs. TrEMBL
Match: W9RCY8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027823 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-70
Identity = 135/167 (80.84%), Postives = 148/167 (88.62%), Query Frame = 1


Query: 16  MALDGC-CNGDDFTAGSFFSIKTTLGDEFQGQGSKSGPRRNIRLLKANYIKEFSFLGHGE 75
           MA++G   N ++   G F SIKTT GDEFQ QGSKSGPRRNIRLLKANYIKEFS LGH E
Sbjct: 1   MAMEGSNANAEELAVGCFLSIKTTFGDEFQAQGSKSGPRRNIRLLKANYIKEFSLLGHAE 60

Query: 76  DPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKTLPVRWDKSV 135
           DP+D+KKC+LD+NTL+AREE AIRQAETDAERIGVGVTS+AQSIFDALSKTLPVRWDK+V
Sbjct: 61  DPLDVKKCFLDLNTLQAREESAIRQAETDAERIGVGVTSQAQSIFDALSKTLPVRWDKTV 120

Query: 136 IVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ 182
           IVVMNEVRVS+PYLPESV GGTPAANDRVKKV+E ERKRLQ R  GQ
Sbjct: 121 IVVMNEVRVSSPYLPESVRGGTPAANDRVKKVIEFERKRLQARSSGQ 167

[Close]

BLAST of Cp4.1LG01g04180 vs. TrEMBL
Match: A0A067JMS9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-65
Identity = 128/179 (71.51%), Postives = 146/179 (81.56%), Query Frame = 1


Query: 18  LDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRNIRLLKAN 77
           ++G  N +DF  G   SIKTTLG+EF+GQ               GSK+GPRRNIR LKAN
Sbjct: 1   MEGSNNSEDFAVGCLLSIKTTLGEEFEGQVITFDRPSNILVLQEGSKTGPRRNIRFLKAN 60

Query: 78  YIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDAL 137
           YIKEFSFLG  EDP+D+KKCY+D+++L+AREELA+RQAE +AERIGVGVT+EAQSIFDAL
Sbjct: 61  YIKEFSFLGQAEDPLDVKKCYIDLHSLQAREELALRQAEAEAERIGVGVTAEAQSIFDAL 120

Query: 138 SKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ 182
           SKTLPVRWDK+VIVVMNEVRV +PYLPE V GGTPAANDRVKKVLE ERKRLQVRG  Q
Sbjct: 121 SKTLPVRWDKTVIVVMNEVRVGSPYLPECVIGGTPAANDRVKKVLEFERKRLQVRGASQ 179

[Close]

BLAST of Cp4.1LG01g04180 vs. TrEMBL
Match: B9SZI5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0394080 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64
Identity = 125/170 (73.53%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 23  NGDDFTAGSFFSIKTTLGDEFQGQ-----------GSKSGPRRNIRLLKANYIKEFSFLG 82
           N ++F  G F SIKT LGDEF+GQ           GSK GPRRNIR LKANYIKEFSFLG
Sbjct: 8   NSEEFAVGCFLSIKTILGDEFEGQVITFDRPSNILGSKHGPRRNIRFLKANYIKEFSFLG 67

Query: 83  HGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKTLPVRWD 142
             EDP+D+KKCY+D+++L+AREELA+RQAE +AER+GVGVT+EAQ+IFDALSKTLPVRWD
Sbjct: 68  QAEDPLDVKKCYIDLHSLQAREELALRQAEAEAERLGVGVTAEAQNIFDALSKTLPVRWD 127

Query: 143 KSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ 182
           K+VIVVMNEVRV+NPYLPE V+GGTPAAN+RVKKVLE ERKRLQ RG GQ
Sbjct: 128 KTVIVVMNEVRVNNPYLPECVSGGTPAANERVKKVLEFERKRLQARGTGQ 177

[Close]

BLAST of Cp4.1LG01g04180 vs. TrEMBL
Match: M5Y5P3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-64
Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 1


Query: 12  KKAR-MALDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRN 71
           KK R MA+DG  N ++   G F SIKTTL DEFQGQ               GSK G RRN
Sbjct: 66  KKIRGMAMDGS-NAEELAIGCFVSIKTTLSDEFQGQVITFDRPSNIVVIQEGSKGGSRRN 125

Query: 72  IRLLKANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEA 131
           IRLLKANYIKE S+LG  EDP+D+K CYLD+N+LRAREELAIRQAE ++ERIGVGVTS+A
Sbjct: 126 IRLLKANYIKELSYLGQAEDPLDVKNCYLDLNSLRAREELAIRQAEAESERIGVGVTSQA 185

Query: 132 QSIFDALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQ 182
           Q+IFDALSKTLPVRWDK+VIVVMN VRVS+PY PESV+GGTPAAN+RVKKVLELERKRLQ
Sbjct: 186 QNIFDALSKTLPVRWDKTVIVVMNAVRVSSPYTPESVSGGTPAANERVKKVLELERKRLQ 245

[Close]

BLAST of Cp4.1LG01g04180 vs. TAIR10
Match: AT1G24050.1 (AT1G24050.1 RNA-processing, Lsm domain)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-44
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 1


Query: 24  GDDFTAGSFFSIKTTLGDEFQG---------------QGSKSGPR--RNIRLLKANYIKE 83
           G+ F  G+ +S+K   GDEF+G               +G+K  P   +N R++ A++I  
Sbjct: 16  GEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNASFITG 75

Query: 84  FSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKTL 143
            S+LG  EDP+D     +D+N LRA+E LAIRQAE DAER+GVGVT+EAQSIFDALSKTL
Sbjct: 76  LSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSKTL 135

Query: 144 PVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRG 179
           PV+W+ S I+VM EVRV +PYL + V GGT AAN+RVKKVLELER+RLQ+ G
Sbjct: 136 PVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]

BLAST of Cp4.1LG01g04180 vs. TAIR10
Match: AT1G70220.1 (AT1G70220.1 RNA-processing, Lsm domain)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-20
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 46  QGSKSGP--RRNIRLLKANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETD 105
           +G+K  P   +++R++  NYI E   LG  ++ +  K   ++++ L  +E  AI    ++
Sbjct: 94  EGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AKNTLVNLDGLIEKENHAI----SN 153

Query: 106 AERIGVGVTSEAQSIFDALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRV 165
            E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + +PY  + V GG    N+RV
Sbjct: 154 VEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGDVFIRSPYHSDCVYGGPRMVNERV 213

Query: 166 KKVLELERKRLQV 177
           K VL  ERK+LQ+
Sbjct: 214 KHVLGQERKKLQL 221

[Close]

BLAST of Cp4.1LG01g04180 vs. NCBI nr
Match: gi|449434891|ref|XP_004135229.1| (PREDICTED: protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 6.6e-77
Identity = 151/181 (83.43%), Postives = 159/181 (87.85%), Query Frame = 1


Query: 16  MALDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRNIRLLK 75
           MALDG  NGDDF+ GSFFSIKTTLGDEFQGQ               GSK GPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 76  ANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFD 135
           ANYIKEFSFLGHGEDP+DLK CYLD+NTLRAREELAIRQAE +AERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 136 ALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGG 182
           ALSKTLPVRWDK+VIVVMNEVRVS+PYLPESV+GGTPAAN+RVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]

BLAST of Cp4.1LG01g04180 vs. NCBI nr
Match: gi|659092318|ref|XP_008447009.1| (PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 3.4e-73
Identity = 148/200 (74.00%), Postives = 158/200 (79.00%), Query Frame = 1


Query: 16  MALDGCCNGDDFTAGSFFSIKTTLGDEFQGQ----------------------------- 75
           MALDG  NGDDF+ GSFFSIKTTLGDEFQGQ                             
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTTLGDEFQGQVITFDRPS 60

Query: 76  -------GSKSGPRRNIRLLKANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQ 135
                  GSK GPRRNIRLLKANYIKEFSFLGHGEDP+DLK CYLD+NTLRAREELAIRQ
Sbjct: 61  NILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQ 120

Query: 136 AETDAERIGVGVTSEAQSIFDALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAA 180
           AE +AERIGVGVTSEAQSIFDALSKTLPVRWDK+VIVVMNEVRV++PYLP+SV+GGTPAA
Sbjct: 121 AEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAA 180

[Close]

BLAST of Cp4.1LG01g04180 vs. NCBI nr
Match: gi|703113926|ref|XP_010100508.1| (hypothetical protein L484_027823 [Morus notabilis])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-70
Identity = 135/167 (80.84%), Postives = 148/167 (88.62%), Query Frame = 1


Query: 16  MALDGC-CNGDDFTAGSFFSIKTTLGDEFQGQGSKSGPRRNIRLLKANYIKEFSFLGHGE 75
           MA++G   N ++   G F SIKTT GDEFQ QGSKSGPRRNIRLLKANYIKEFS LGH E
Sbjct: 1   MAMEGSNANAEELAVGCFLSIKTTFGDEFQAQGSKSGPRRNIRLLKANYIKEFSLLGHAE 60

Query: 76  DPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDALSKTLPVRWDKSV 135
           DP+D+KKC+LD+NTL+AREE AIRQAETDAERIGVGVTS+AQSIFDALSKTLPVRWDK+V
Sbjct: 61  DPLDVKKCFLDLNTLQAREESAIRQAETDAERIGVGVTSQAQSIFDALSKTLPVRWDKTV 120

Query: 136 IVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ 182
           IVVMNEVRVS+PYLPESV GGTPAANDRVKKV+E ERKRLQ R  GQ
Sbjct: 121 IVVMNEVRVSSPYLPESVRGGTPAANDRVKKVIEFERKRLQARSSGQ 167

[Close]

BLAST of Cp4.1LG01g04180 vs. NCBI nr
Match: gi|802787946|ref|XP_012092050.1| (PREDICTED: protein LSM12 homolog A-like [Jatropha curcas])

HSP 1 Score: 256.1 bits (653), Expect = 4.5e-65
Identity = 128/179 (71.51%), Postives = 146/179 (81.56%), Query Frame = 1


Query: 18  LDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRNIRLLKAN 77
           ++G  N +DF  G   SIKTTLG+EF+GQ               GSK+GPRRNIR LKAN
Sbjct: 1   MEGSNNSEDFAVGCLLSIKTTLGEEFEGQVITFDRPSNILVLQEGSKTGPRRNIRFLKAN 60

Query: 78  YIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFDAL 137
           YIKEFSFLG  EDP+D+KKCY+D+++L+AREELA+RQAE +AERIGVGVT+EAQSIFDAL
Sbjct: 61  YIKEFSFLGQAEDPLDVKKCYIDLHSLQAREELALRQAEAEAERIGVGVTAEAQSIFDAL 120

Query: 138 SKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGGQ 182
           SKTLPVRWDK+VIVVMNEVRV +PYLPE V GGTPAANDRVKKVLE ERKRLQVRG  Q
Sbjct: 121 SKTLPVRWDKTVIVVMNEVRVGSPYLPECVIGGTPAANDRVKKVLEFERKRLQVRGASQ 179

[Close]

BLAST of Cp4.1LG01g04180 vs. NCBI nr
Match: gi|658009561|ref|XP_008339997.1| (PREDICTED: uncharacterized protein LOC103402983 [Malus domestica])

HSP 1 Score: 256.1 bits (653), Expect = 4.5e-65
Identity = 131/181 (72.38%), Postives = 149/181 (82.32%), Query Frame = 1


Query: 16  MALDGCCNGDDFTAGSFFSIKTTLGDEFQGQ---------------GSKSGPRRNIRLLK 75
           MA+DG  N ++F  GSF  IKTTL DEFQGQ               GSK G RRNIRLLK
Sbjct: 1   MAMDGS-NTEEFAIGSFVKIKTTLSDEFQGQVITFDRPSNIVVIQEGSKGGARRNIRLLK 60

Query: 76  ANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETDAERIGVGVTSEAQSIFD 135
           ANYIKE S+ G  EDP+D+KKCYLD+N+LRAREELAIRQAE ++ERIGVGVT++AQ+IFD
Sbjct: 61  ANYIKELSYSGQAEDPLDIKKCYLDLNSLRAREELAIRQAEAESERIGVGVTAQAQNIFD 120

Query: 136 ALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGG 182
           ALSKTLPVRWDK+VIVVMNEVRVS+PY PESV+GGTPAAN+RVKKVLELER+RLQ RGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYTPESVSGGTPAANERVKKVLELERRRLQTRGGG 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LS12A_DANRE	4.2e-07	27.44	Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1	[more]
LSM12_BOVIN	1.6e-06	26.83	Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2	[more]
LSM12_HUMAN	1.6e-06	26.83	Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2	[more]
LSM12_MOUSE	1.6e-06	26.83	Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=1 SV=1	[more]
LSM12_PONAB	1.6e-06	26.83	Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g04180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9_CUCSA	4.6e-77	83.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603270 PE=4 SV=1	[more]
W9RCY8_9ROSA	2.5e-70	80.84	Uncharacterized protein OS=Morus notabilis GN=L484_027823 PE=4 SV=1	[more]
A0A067JMS9_JATCU	3.1e-65	71.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1	[more]
B9SZI5_RICCO	1.2e-64	73.53	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0394080 PE=4 SV=1	[more]
M5Y5P3_PRUPE	3.4e-64	71.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010406mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g04180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24050.1	1.6e-44	54.65	RNA-processing, Lsm domain	[more]
AT1G70220.1	7.9e-20	39.85	RNA-processing, Lsm domain	[more]

BLAST of Cp4.1LG01g04180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434891\|ref\|XP_004135229.1\|	6.6e-77	83.43	PREDICTED: protein LSM12 homolog A [Cucumis sativus]	[more]
gi\|659092318\|ref\|XP_008447009.1\|	3.4e-73	74.00	PREDICTED: uncharacterized protein LOC103489557 [Cucumis melo]	[more]
gi\|703113926\|ref\|XP_010100508.1\|	3.5e-70	80.84	hypothetical protein L484_027823 [Morus notabilis]	[more]
gi\|802787946\|ref\|XP_012092050.1\|	4.5e-65	71.51	PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]	[more]
gi\|658009561\|ref\|XP_008339997.1\|	4.5e-65	72.38	PREDICTED: uncharacterized protein LOC103402983 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019181	Anticodon-binding_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04180.1	Cp4.1LG01g04180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 84..166 score: 6.4
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 80..166 score: 1.8
None	No IPR available	PANTHER	PTHR13542	UNCHARACTERIZED	coord: 9..181 score: 1.2
None	No IPR available	PANTHER	PTHR13542:SF0	PROTEIN LSM12 HOMOLOG	coord: 9..181 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g04180	Cucsa.285820	Cucumber (Gy14) v1	cgycpeB0755
Cp4.1LG01g04180	CmaCh04G015870	Cucurbita maxima (Rimu)	cmacpeB724
Cp4.1LG01g04180	CmoCh04G016590	Cucurbita moschata (Rifu)	cmocpeB676
Cp4.1LG01g04180	CmoCh04G003080	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g04180	Cla010110	Watermelon (97103) v1	cpewmB434
Cp4.1LG01g04180	Csa5G603270	Cucumber (Chinese Long) v2	cpecuB419
Cp4.1LG01g04180	MELO3C012019	Melon (DHL92) v3.5.1	cpemeB380
Cp4.1LG01g04180	ClCG05G025100	Watermelon (Charleston Gray)	cpewcgB395
Cp4.1LG01g04180	CSPI05G22920	Wild cucumber (PI 183967)	cpecpiB419
Cp4.1LG01g04180	MELO3C012019.2	Melon (DHL92) v3.6.1	cpemedB439
Cp4.1LG01g04180	CsaV3_5G031800	Cucumber (Chinese Long) v3	cpecucB0521
Cp4.1LG01g04180	Bhi07G001368	Wax gourd	cpewgoB0561
Cp4.1LG01g04180	Carg01767	Silver-seed gourd	carcpeB1178

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g04180	Cp4.1LG01g13100	Cucurbita pepo (Zucchini)	cpecpeB375

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g04180	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g04180	Wild cucumber (PI 183967)	cpecpiB445
Cp4.1LG01g04180	Cucumber (Chinese Long) v2	cpecuB444
Cp4.1LG01g04180	Bottle gourd (USVL1VR-Ls)	cpelsiB363
Cp4.1LG01g04180	Watermelon (97103) v1	cpewmB379
Cp4.1LG01g04180	Cucumber (Gy14) v2	cgybcpeB631
Cp4.1LG01g04180	Cucumber (Chinese Long) v3	cpecucB0550